AT2G18460

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015365
Physical Location & Seq
Forward (+)
8001234 .. 8002998
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18460.1

Sequence Viewer

Length: 825 bp
ATGGAAACGAGGGAGAGAGATCTAGAACGATTGATCCCGATGCATAAATCCGGAGCTTCTCCTCGCGACGTCGTTTTGTCTGTTCCGCCGTCTCCTCTCGCTTCTCCGATCCACGTCGCCGGCAAAGAGGCGATTTACAAAGTCATTAGAAGCTGGGCCTCCAAAAAGTTCATGACCGGATGTGTCATTCTGCTACCAATCGCTGTCACATTCTACTTCACGTGGTGGTTTATACATTTCGTTGATGGATTCTTCTCCCCGATCTATACTCATCTCGGAATCAATATGTTCGGTCTTGGCTTTGTAACATCCATCACATTCATATTTATGGTTGGTGTGTTCATGTCTTCATGGCTTGGAGCTTCAGTTCTCAGTATCGGAGAATGGTTTATCAAGAAGATGCCTCTCGTAAGCTACATCTACTCAGCTTCTAAACAAATTAGTGGAGCAATCTCACCAGATCAAAGCTCAGGTGCATTCAAGGAGGTAGCAATTATCAGACATCCTCATATGGGAGAATACGCTTTTGGTTTCATTACATCGACTGTGATTCTTCGAGGCCGTGCTGGTGGAGAAGAACTATGTTGTGTCTATGTTCCCACCAACCATCTTTACCTTGGAGACATTTTCCTCATTAGCTCAAAGGACATCATAAGACCTAATCTCTCAGTCCGGGAAGGCATAGAAATCGTCATCTCGGGTGGTATGTCGATTCCACATATGCTAACAACTCTGGACTCAGAGACTATTCACAGAATGTTGGAAAGTTTTGGAATTTTAGAGTTTGGAGATGTTTGTCTAAGTCTAGTTTTAGCTTGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

274

Amino Acids

30.45

Weight (kDa)

6.75

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 103 - 203 2.2e-25 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18460
fragaria_vesca FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica Prupe.1G380400_v2.0.a1
pyrus_communis pycom15g02730
rosa_chinensis RchiOBHm_Chr6g0300911
rosa_laevigata RLG00000011291
rosa_multiflora Rmu_sc0006254.1_g000003
rosa_roxburghii Rroxscaffold_7G00167320
rosa_samantha Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccII CGCG 1 cut(s) 66
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 28, 103
AcsI RAATTY 1 cut(s) 774
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 1 cut(s) 481
AjiI CACGTC 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AloI GAACNNNNNNTCC 4 cut(s) 18, 50, 351, 383
AluBI AGCT 8 cut(s) 56, 153, 362, 414, 428, 468, 639, 815
AluI AGCT 8 cut(s) 56, 153, 362, 414, 428, 468, 639, 815
Alw26I GTCTC 3 cut(s) 96, 615, 737
AlwI GGATC 2 cut(s) 28, 103
Ama87I CYCGRG 1 cut(s) 697
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 2 cut(s) 156, 559
ApoI RAATTY 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 1 cut(s) 447
AvaI CYCGRG 1 cut(s) 697
BbrPI CACGTG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 339
BccI CCATC 3 cut(s) 239, 320, 615
BceAI ACGGC 2 cut(s) 73, 546
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BcnI CCSGG 1 cut(s) 674
BcoDI GTCTC 3 cut(s) 96, 615, 737
BfaI CTAG 2 cut(s) 23, 806
BglII AGATCT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 697
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 674
BmsI GCATC 2 cut(s) 30, 390
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 469
BpuMI CCSGG 1 cut(s) 674
BsaAI YACGTR 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 616
BsaWI WCCGGW 2 cut(s) 50, 176
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse118I RCCGGY 1 cut(s) 119
BseAI TCCGGA 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 3 cut(s) 185, 308, 502
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 5 cut(s) 385, 438, 483, 681, 753
BseRI GAGGAG 2 cut(s) 51, 84
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 158, 561
BsiHKCI CYCGRG 1 cut(s) 697
BsiSI CCGG 4 cut(s) 51, 120, 177, 673
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 3 cut(s) 96, 615, 737
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 158, 561
BsoBI CYCGRG 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 5 cut(s) 19, 33, 108, 261, 460
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 86
BspANI GGCC 2 cut(s) 158, 561
BspCNI CTCAG 5 cut(s) 384, 437, 482, 680, 752
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 171
BspPI GGATC 2 cut(s) 28, 103
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 5 cut(s) 19, 33, 108, 261, 460
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 1 cut(s) 547
BstACI GRCGYC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 6 cut(s) 371, 424, 469, 667, 739, 800
BstF5I GGATG 3 cut(s) 185, 308, 502
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 5 cut(s) 22, 36, 111, 264, 463
BstMAI GTCTC 3 cut(s) 96, 615, 737
BstMBI GATC 5 cut(s) 19, 33, 108, 261, 460
BstSCI CCNGG 1 cut(s) 672
BstUI CGCG 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 158, 561
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 185, 308, 502
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 156
CviAII CATG 3 cut(s) 172, 343, 351
DdeI CTNAG 6 cut(s) 371, 424, 469, 667, 739, 800
DpnI GATC 5 cut(s) 21, 35, 110, 263, 462
DpnII GATC 5 cut(s) 19, 33, 108, 261, 460
DraIII CACNNNGTG 1 cut(s) 225
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 3 cut(s) 175, 346, 354
FatI CATG 3 cut(s) 171, 342, 350
FauNDI CATATG 2 cut(s) 510, 720
FokI GGATG 3 cut(s) 192, 295, 489
FspBI CTAG 2 cut(s) 23, 806
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 158, 561
HapII CCGG 4 cut(s) 51, 120, 177, 673
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 175, 346, 354
HinfI GANTC 5 cut(s) 249, 279, 550, 712, 737
HpaII CCGG 4 cut(s) 51, 120, 177, 673
HphI GGTGA 1 cut(s) 447
Hpy188I TCNGA 5 cut(s) 108, 278, 380, 500, 742
Hpy188III TCNNGA 7 cut(s) 23, 37, 51, 65, 172, 394, 734
Hpy99I CGWCG 3 cut(s) 71, 74, 119
HpyAV CCTTC 1 cut(s) 671
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 69, 114, 221
HpyCH4V TGCA 2 cut(s) 43, 476
HpyF3I CTNAG 6 cut(s) 371, 424, 469, 667, 739, 800
HpySE526I ACGT 3 cut(s) 69, 114, 221
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 175, 346, 354
Kpn2I TCCGGA 1 cut(s) 50
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 5 cut(s) 19, 33, 108, 261, 460
LmnI GCTCC 3 cut(s) 53, 359, 446
LpnPI CCDG 9 cut(s) 64, 133, 139, 190, 456, 471, 552, 686, 719
LweI GCATC 2 cut(s) 30, 390
MaeI CTAG 2 cut(s) 23, 806
MaeII ACGT 3 cut(s) 69, 114, 221
MaeIII GTNAC 2 cut(s) 205, 304
MalI GATC 5 cut(s) 21, 35, 110, 263, 462
MboI GATC 5 cut(s) 19, 33, 108, 261, 460
MboII GAAGA 5 cut(s) 244, 339, 409, 545, 587
MflI RGATCY 1 cut(s) 19
MluCI AATT 3 cut(s) 438, 492, 774
MlyI GAGTC 1 cut(s) 731
MmeI TCCRAC 1 cut(s) 741
Mph1103I ATGCAT 1 cut(s) 45
MroI TCCGGA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 4 cut(s) 51, 120, 177, 673
MspR9I CCNGG 1 cut(s) 674
Mva1269I GAATGC 1 cut(s) 476
MvnI CGCG 1 cut(s) 66
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 674
NdeI CATATG 2 cut(s) 510, 720
NdeII GATC 5 cut(s) 19, 33, 108, 261, 460
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 175, 346, 354
NmuCI GTSAC 1 cut(s) 205
NruI TCGCGA 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 45
PagI TCATGA 1 cut(s) 171
PctI GAATGC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 249, 279, 550, 712
PfoI TCCNGGA 1 cut(s) 672
PleI GAGTC 1 cut(s) 731
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 1 cut(s) 731
Ppu21I YACGTR 1 cut(s) 222
PspCI CACGTG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 19
RruI TCGCGA 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 326
Sau3AI GATC 5 cut(s) 19, 33, 108, 261, 460
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 674
SfaNI GCATC 2 cut(s) 30, 390
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 3 cut(s) 438, 492, 774
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 23, 806
StyD4I CCNGG 1 cut(s) 672
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 72, 117, 224
TaqI TCGA 3 cut(s) 542, 556, 710
TaqII GACCGA 1 cut(s) 281
TasI AATT 3 cut(s) 438, 492, 774
TfiI GAWTC 4 cut(s) 249, 279, 550, 712
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 160, 310, 331, 339, 523
XapI RAATTY 1 cut(s) 774
XbaI TCTAGA 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XspI CTAG 2 cut(s) 23, 806
ZraI GACGTC 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.