RchiOBHm_Chr6g0300911

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015365
Physical Location & Seq
Reverse (-)
61571171 .. 61572809
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27024

Sequence Viewer

Length: 621 bp
ATGACAGGATGTGTCATTCTTCTTCCAATAGCCATTACATTCTACGTGACGTGGATTTTCATTCGTTTTGTGGATGGTTTCTTCTCCCCAATTTATAATCATCTAGGAATCAATGTTTTTGGCCTTGGATTCGCCACCTCTCTCATCTTCATCTTCCTAATTGGTGTTTTCATGCAATCATGGTTGGGAACTTCAGTTCTAACCGTATGGGAGTGGTTTATTAAGAAAATGCCGCTTATAAGCTATATATATACTGCCTCAAAGCAAATTAGTACAGCAATATCACCAGATCAGACCTCTAAGGCGTTCAAGGAAGTGGCTATCATAAGGCATCCAAGAATCGGAGAATATGTATTGGGATTTATTACAAATACAGTTATTCTTAATCGAAGGAGTGTAGGAGAAGAACTCTGCTGTGTTTATATACCTACCAACCACCTTTATCTTGGAGACATTGTTCTTATCAGTCCCAAAGATGTTATGAGGCCTAATCTGTCAGTTCGAGAAGGAATTGAAATTGTTATTTCCGGAGGTATGTCAATACCCCAATTGTTAACTACAATAGAACCACTAAACATTCCACCAGAAAGAGTTCCCCACTTTGAAACCCCAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

206

Amino Acids

23.26

Weight (kDa)

6.9

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 47 - 146 6.2e-26 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18460
fragaria_vesca FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica Prupe.1G380400_v2.0.a1
pyrus_communis pycom15g02730
rosa_chinensis RchiOBHm_Chr6g0300911
rosa_laevigata RLG00000011291
rosa_multiflora Rmu_sc0006254.1_g000003
rosa_roxburghii Rroxscaffold_7G00167320
rosa_samantha Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 239
AccIII TCCGGA 1 cut(s) 527
AciI CCGC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 3 cut(s) 310, 515, 605
AjiI CACGTC 1 cut(s) 51
AloI GAACNNNNNNTCC 4 cut(s) 180, 212, 441, 473
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 527
AoxI GGCC 2 cut(s) 121, 485
Asp700I GAANNNNTTC 1 cut(s) 591
AsuHPI GGTGA 1 cut(s) 276
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 51
BmsI GCATC 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 393, 425
BsaAI YACGTR 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 441, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 3 cut(s) 14, 79, 331
BseLI CCNNNNNNNGG 1 cut(s) 341
BshFI GGCC 2 cut(s) 123, 487
BsiSI CCGG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 2 cut(s) 123, 487
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 123, 487
BspEI TCCGGA 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 205, 376
BstBAI YACGTR 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 14, 79, 331
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 123, 487
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 3 cut(s) 14, 79, 331
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 172, 180
CviJI RGCY 5 cut(s) 32, 123, 243, 320, 487
CviKI_1 RGCY 5 cut(s) 32, 123, 243, 320, 487
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 175, 183
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 171, 179
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 3 cut(s) 21, 86, 318
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 123, 487
HapII CCGG 1 cut(s) 528
Hin1II CATG 2 cut(s) 175, 183
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 3 cut(s) 108, 129, 339
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 1 cut(s) 528
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 2 cut(s) 294, 344
Hpy188III TCNNGA 2 cut(s) 503, 528
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 2 cut(s) 384, 500
HpyCH4III ACNGT 2 cut(s) 205, 376
HpyCH4IV ACGT 2 cut(s) 45, 50
HpyCH4V TGCA 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 45, 50
Hsp92II CATG 2 cut(s) 175, 183
Kpn2I TCCGGA 1 cut(s) 527
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 300, 541, 597
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 45, 50
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 11, 14, 73, 139, 145, 416
MfeI CAATTG 1 cut(s) 548
MluCI AATT 6 cut(s) 90, 159, 267, 510, 516, 548
MnlI CCTC 5 cut(s) 148, 268, 307, 477, 524
MroI TCCGGA 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 3 cut(s) 222, 384, 554
MspI CCGG 1 cut(s) 528
MunI CAATTG 1 cut(s) 548
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 175, 183
NmuCI GTSAC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 108, 129, 339
PkrI GCNGC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 46
PsiI TTATAA 2 cut(s) 96, 239
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 222, 384, 554
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 289
SetI ASST 8 cut(s) 48, 53, 140, 245, 299, 430, 441, 535
SfaNI GCATC 1 cut(s) 340
Sse9I AATT 6 cut(s) 90, 159, 267, 510, 516, 548
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 104
StuI AGGCCT 1 cut(s) 487
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 205, 376
TaiI ACGT 2 cut(s) 48, 53
TaqI TCGA 2 cut(s) 388, 502
TasI AATT 6 cut(s) 90, 159, 267, 510, 516, 548
TatI WGTACW 1 cut(s) 272
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 108, 129, 339
Tru1I TTAA 3 cut(s) 222, 384, 554
Tru9I TTAA 3 cut(s) 222, 384, 554
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 49, 139, 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.