Rh6CG427700

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015365
Physical Location & Seq
Reverse (-)
60963081 .. 60964647
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG427700.1

Sequence Viewer

Length: 852 bp
ATGGCAACGAGAGAAAGGGAGAGAGATCTTGAGCTCCTGATTCGAGAGAGGGAGAGGGATCTAGAGCTTCTTATTCCGGTTTCGAACCCCGAAAATGCACCTCCCAAATCCTCCAACTCCGCGCCGGAATCTCCAGCTACCTCCACAACATCAACATCATCTCATTCCCATCATACCTCCGGCCGCGAGGCATTTTCAAAAGTCATTCAGAGCTGGGCTTCCAAGAAGTTTATGACAGGATGTGTCATTCTTCTTCCAATAGCCATTACATTCTACGTGACGTGGATTTTCATTCGTTTTGTGGATGGTTTCTTCTCCCCAATTTATAATCATCTAGGAATCAATGTTTTTGGTCTTGGATTCGCCACCTCTCTCATCTTCATCTTCCTAATTGGTGTTTTCATGCAATCATGGTTGGGAACTTCAGTTCTAACCGTATGGGAGTGGTTTATTAAGAAAATGCCGCTTATAAGCTATATATATACTGCCTCAAAGCAAATTAGTACAGCAATATCACCAGATCAGACCTCTAAGGCGTTCAAGGAAGTGGCTATCATAAGGCATCCAAGAATCGGAGAATATGTATTGGGATTTATTACAAATACAGTTATTCTTAATCGAAGGAGTGTAGGAGAAGAACTCTGCTGTGTTTATATACCTACCAACCACCTTTATCTTGGAGACATTGTTCTTATCAGTCCCAAAGATGTTATGAGGCCTAATCTGTCAGTTCGAGAAGGAATTGAAATTGTTATTTCCGGAGGTATGTCAATACCCCAATTGTTAACTACAATAGAACCACTAAACATTCCACCAGAAAGAGTTCCCCACTTTGAAACCCCAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

283

Amino Acids

31.86

Weight (kDa)

7.06

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 124 - 223 1.3e-25 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18460
fragaria_vesca FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica Prupe.1G380400_v2.0.a1
pyrus_communis pycom15g02730
rosa_chinensis RchiOBHm_Chr6g0300911
rosa_laevigata RLG00000011291
rosa_multiflora Rmu_sc0006254.1_g000003
rosa_roxburghii Rroxscaffold_7G00167320
rosa_samantha Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 327, 470
AccII CGCG 2 cut(s) 122, 186
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 3 cut(s) 120, 184, 464
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 4 cut(s) 198, 541, 746, 836
AjiI CACGTC 1 cut(s) 282
AloI GAACNNNNNNTCC 4 cut(s) 411, 443, 672, 704
AluBI AGCT 5 cut(s) 34, 67, 137, 213, 474
AluI AGCT 5 cut(s) 34, 67, 137, 213, 474
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 758
AoxI GGCC 2 cut(s) 181, 716
Asp700I GAANNNNTTC 1 cut(s) 822
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 507
AsuII TTCGAA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 2 cut(s) 177, 299
BcoDI GTCTC 1 cut(s) 675
BfaI CTAG 2 cut(s) 62, 335
BglII AGATCT 1 cut(s) 25
BisI GCNGC 2 cut(s) 184, 464
BlsI GCNGC 2 cut(s) 185, 465
BmgBI CACGTC 1 cut(s) 282
BmsI GCATC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 277
BsaWI WCCGGW 2 cut(s) 76, 758
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 672, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 572
BseAI TCCGGA 1 cut(s) 758
BseGI GGATG 3 cut(s) 245, 310, 562
BseLI CCNNNNNNNGG 1 cut(s) 572
BseX3I CGGCCG 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 122, 186
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 183, 718
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 4 cut(s) 77, 125, 180, 759
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 2 cut(s) 183, 718
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 36
Bsp13I TCCGGA 1 cut(s) 758
Bsp143I GATC 3 cut(s) 25, 58, 520
BspACI CCGC 3 cut(s) 120, 184, 464
BspANI GGCC 2 cut(s) 183, 718
BspEI TCCGGA 1 cut(s) 758
BspFNI CGCG 2 cut(s) 122, 186
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 83
BssMI GATC 3 cut(s) 25, 58, 520
Bst4CI ACNGT 2 cut(s) 436, 607
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 245, 310, 562
BstFNI CGCG 2 cut(s) 122, 186
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 3 cut(s) 28, 61, 523
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 3 cut(s) 25, 58, 520
BstMCI CGRYCG 1 cut(s) 184
BstUI CGCG 2 cut(s) 122, 186
BstX2I RGATCY 2 cut(s) 25, 58
BstYI RGATCY 2 cut(s) 25, 58
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 183, 718
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 3 cut(s) 245, 310, 562
CfoI GCGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 504
CviAII CATG 2 cut(s) 403, 411
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 1 cut(s) 531
DpnI GATC 3 cut(s) 27, 60, 522
DpnII GATC 3 cut(s) 25, 58, 520
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 2 cut(s) 406, 414
FaqI GGGAC 1 cut(s) 684
FatI CATG 2 cut(s) 402, 410
Fnu4HI GCNGC 2 cut(s) 184, 464
FokI GGATG 3 cut(s) 252, 317, 549
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 184, 464
FspBI CTAG 2 cut(s) 62, 335
GlaI GCGC 1 cut(s) 123
GluI GCNGC 2 cut(s) 184, 464
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 2 cut(s) 183, 718
HapII CCGG 4 cut(s) 77, 125, 180, 759
HhaI GCGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 406, 414
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HinfI GANTC 5 cut(s) 40, 128, 339, 360, 570
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 4 cut(s) 77, 125, 180, 759
HphI GGTGA 1 cut(s) 507
Hpy166II GTNNAC 1 cut(s) 786
Hpy188I TCNGA 3 cut(s) 210, 525, 575
Hpy188III TCNNGA 6 cut(s) 29, 37, 44, 62, 734, 759
Hpy8I GTNNAC 1 cut(s) 786
HpyAV CCTTC 2 cut(s) 615, 731
HpyCH4III ACNGT 2 cut(s) 436, 607
HpyCH4IV ACGT 2 cut(s) 276, 281
HpyCH4V TGCA 2 cut(s) 98, 406
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 2 cut(s) 276, 281
Hsp92II CATG 2 cut(s) 406, 414
HspAI GCGC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 758
KspAI GTTAAC 1 cut(s) 786
Kzo9I GATC 3 cut(s) 25, 58, 520
LmnI GCTCC 1 cut(s) 39
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 62, 335
MaeII ACGT 2 cut(s) 276, 281
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 27, 60, 522
MboI GATC 3 cut(s) 25, 58, 520
MboII GAAGA 6 cut(s) 242, 245, 304, 370, 376, 647
MfeI CAATTG 1 cut(s) 779
MflI RGATCY 2 cut(s) 25, 58
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 6 cut(s) 321, 390, 498, 741, 747, 779
MmeI TCCRAC 1 cut(s) 138
MroI TCCGGA 1 cut(s) 758
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 3 cut(s) 453, 615, 785
MspI CCGG 4 cut(s) 77, 125, 180, 759
MunI CAATTG 1 cut(s) 779
MvnI CGCG 2 cut(s) 122, 186
NdeII GATC 3 cut(s) 25, 58, 520
NlaIII CATG 2 cut(s) 406, 414
NmuCI GTSAC 1 cut(s) 277
NspV TTCGAA 1 cut(s) 83
PceI AGGCCT 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 5 cut(s) 40, 128, 339, 360, 570
PkrI GCNGC 2 cut(s) 185, 465
Ppu21I YACGTR 1 cut(s) 277
PsiI TTATAA 2 cut(s) 327, 470
Psp124BI GAGCTC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 213
PsuI RGATCY 2 cut(s) 25, 58
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 453, 615, 785
SatI GCNGC 2 cut(s) 184, 464
Sau3AI GATC 3 cut(s) 25, 58, 520
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 6 cut(s) 321, 390, 498, 741, 747, 779
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 3 cut(s) 120, 184, 464
SspMI CTAG 2 cut(s) 62, 335
SstI GAGCTC 1 cut(s) 36
StuI AGGCCT 1 cut(s) 718
TaaI ACNGT 2 cut(s) 436, 607
TaiI ACGT 2 cut(s) 279, 284
TaqI TCGA 4 cut(s) 43, 83, 619, 733
TasI AATT 6 cut(s) 321, 390, 498, 741, 747, 779
TatI WGTACW 1 cut(s) 503
TauI GCSGC 2 cut(s) 186, 466
TfiI GAWTC 5 cut(s) 40, 128, 339, 360, 570
Tru1I TTAA 3 cut(s) 453, 615, 785
Tru9I TTAA 3 cut(s) 453, 615, 785
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 280, 370, 391
XbaI TCTAGA 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 2 cut(s) 62, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.