FvH4_2g39890

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015365
Physical Location & Seq
Forward (+)
28517560 .. 28519793
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39890.t2

Sequence Viewer

Length: 852 bp
ATGGCGAACAGAGAAAGAGAGAGAGATCTTGAGCTTCTGATTCGAGAGAGGGAGAGGGATCTAGAGCTCCTTATTCCGGTTTCGACCCCCGAAAATGCACCTCCCATATCCTCCACCTCCTCTCCAAAATCTCCAGCTACCTCCACCACATCAACATCATCTCATAACCATCATACCTCCGGCCGCGAGGCATTTTCAAAAGTCATTCAGAGCTGGGCTTCCAAGAAGTTTATGACAGGATGTGTCATTCTTCTTCCAATAGCTATTACATTCTACGTGACGTGGATTTTCATCCGTTTCGTGGATGGTTTCTTCTCCCCCATTTATAATCATCTAGGAATCAATGTTTTTGGTCTTGGATTTGCCACCTCTCTCATCTTCATCTTCTTAATTGGTGTTTTCATGCAATCATGGTTAGGAACTTCAGTTCTAACCTTATGGGAGTGGTTTATTAAGAAAATGCCGCTTATAAGCTATATATATAGTGCCTCAAAGCAAATTAGTACAGCAATATCACCAGATCAGACCTCTAAGGCATTTAAGGAATTGGTTATCATAAGGCATCCAAGAATCGGAGAGTATGTATTGGGATTTATTACTAATACAGTTATGCTTAATCGAAGGAGTATAGGCGAAGAACTCTGCTGTGTTTATATACCTACCAACCACCTTTACCTTGGTGACATTGTTCTAATCAGTCCCAAAGATGTTCTGAGGCTCAATCTGTCAGTTCGAGAAGGAATTGAAATTGTTATTTCCGGAGGTATGTCAATACCCCAACTGTTAACTACAATGGAACCACCAATTGTTCCACCAGAAAGGATTCCCCACTTCGAAACGCCAAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

284

Amino Acids

31.94

Weight (kDa)

8.41

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 47 - 146 3.2e-26 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18460
fragaria_vesca FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica Prupe.1G380400_v2.0.a1
pyrus_communis pycom15g02730
rosa_chinensis RchiOBHm_Chr6g0300911
rosa_laevigata RLG00000011291
rosa_multiflora Rmu_sc0006254.1_g000003
rosa_roxburghii Rroxscaffold_7G00167320
rosa_samantha Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 327, 470
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 2 cut(s) 184, 464
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 76, 301, 572
AgsI TTSAA 2 cut(s) 198, 746
AjiI CACGTC 1 cut(s) 282
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
AluBI AGCT 6 cut(s) 34, 67, 137, 213, 263, 474
AluI AGCT 6 cut(s) 34, 67, 137, 213, 263, 474
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 758
AoxI GGCC 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 822
AsuHPI GGTGA 2 cut(s) 507, 692
AsuII TTCGAA 1 cut(s) 834
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 2 cut(s) 177, 299
BfaI CTAG 2 cut(s) 62, 335
BglII AGATCT 1 cut(s) 25
BisI GCNGC 2 cut(s) 184, 464
BlsI GCNGC 2 cut(s) 185, 465
BmgBI CACGTC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 798
BmsI GCATC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 676
BsaWI WCCGGW 2 cut(s) 76, 758
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 567, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 301, 572
Bse8I GATNNNNATC 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 4 cut(s) 245, 291, 310, 562
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 3 cut(s) 76, 301, 572
BseMII CTCAG 1 cut(s) 704
BseRI GAGGAG 1 cut(s) 109
BseX3I CGGCCG 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 3 cut(s) 77, 180, 759
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 3 cut(s) 76, 301, 572
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 758
Bsp143I GATC 3 cut(s) 25, 58, 520
BspACI CCGC 2 cut(s) 184, 464
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 705
BspEI TCCGGA 1 cut(s) 758
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 798
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 834
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 3 cut(s) 25, 58, 520
BssT1I CCWWGG 1 cut(s) 676
Bst4CI ACNGT 2 cut(s) 607, 783
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 834
BstDEI CTNAG 2 cut(s) 531, 713
BstF5I GGATG 4 cut(s) 245, 291, 310, 562
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 3 cut(s) 28, 61, 523
BstMBI GATC 3 cut(s) 25, 58, 520
BstMCI CGRYCG 1 cut(s) 184
BstUI CGCG 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 25, 58
BstYI RGATCY 2 cut(s) 25, 58
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 183
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 4 cut(s) 245, 291, 310, 562
Csp6I GTAC 1 cut(s) 504
CviAII CATG 2 cut(s) 403, 411
CviJI RGCY 9 cut(s) 34, 67, 137, 183, 213, 218, 263, 474, 718
CviKI_1 RGCY 9 cut(s) 34, 67, 137, 183, 213, 218, 263, 474, 718
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 2 cut(s) 531, 713
DpnI GATC 3 cut(s) 27, 60, 522
DpnII GATC 3 cut(s) 25, 58, 520
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 69
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 2 cut(s) 406, 414
FaqI GGGAC 1 cut(s) 684
FatI CATG 2 cut(s) 402, 410
Fnu4HI GCNGC 2 cut(s) 184, 464
FokI GGATG 4 cut(s) 252, 278, 317, 549
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 184, 464
FspBI CTAG 2 cut(s) 62, 335
GluI GCNGC 2 cut(s) 184, 464
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 77, 180, 759
Hin1II CATG 2 cut(s) 406, 414
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HinfI GANTC 4 cut(s) 40, 339, 570, 823
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 3 cut(s) 77, 180, 759
HphI GGTGA 2 cut(s) 507, 692
Hpy166II GTNNAC 1 cut(s) 786
Hpy188I TCNGA 5 cut(s) 39, 210, 525, 575, 714
Hpy188III TCNNGA 5 cut(s) 29, 44, 62, 734, 759
Hpy8I GTNNAC 1 cut(s) 786
HpyAV CCTTC 2 cut(s) 615, 731
HpyCH4III ACNGT 2 cut(s) 607, 783
HpyCH4IV ACGT 2 cut(s) 276, 281
HpyCH4V TGCA 2 cut(s) 98, 406
HpyF3I CTNAG 2 cut(s) 531, 713
HpySE526I ACGT 2 cut(s) 276, 281
Hsp92II CATG 2 cut(s) 406, 414
Kpn2I TCCGGA 1 cut(s) 758
KspAI GTTAAC 1 cut(s) 786
Kzo9I GATC 3 cut(s) 25, 58, 520
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 8 cut(s) 90, 147, 193, 199, 222, 531, 772, 828
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 62, 335
MaeII ACGT 2 cut(s) 276, 281
MaeIII GTNAC 2 cut(s) 277, 680
MalI GATC 3 cut(s) 27, 60, 522
MboI GATC 3 cut(s) 25, 58, 520
MboII GAAGA 6 cut(s) 242, 245, 304, 370, 376, 647
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 2 cut(s) 25, 58
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 6 cut(s) 390, 498, 545, 741, 747, 804
MroI TCCGGA 1 cut(s) 758
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 5 cut(s) 389, 453, 540, 615, 785
MspI CCGG 3 cut(s) 77, 180, 759
MunI CAATTG 1 cut(s) 804
MvnI CGCG 1 cut(s) 186
NdeII GATC 3 cut(s) 25, 58, 520
NlaIII CATG 2 cut(s) 406, 414
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 2 cut(s) 277, 680
NspV TTCGAA 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 4 cut(s) 40, 339, 570, 823
PkrI GCNGC 2 cut(s) 185, 465
Ppu21I YACGTR 1 cut(s) 277
PsiI TTATAA 2 cut(s) 327, 470
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 798
PsuI RGATCY 2 cut(s) 25, 58
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 389, 453, 540, 615, 785
SatI GCNGC 2 cut(s) 184, 464
Sau3AI GATC 3 cut(s) 25, 58, 520
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 834
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 6 cut(s) 390, 498, 545, 741, 747, 804
SsiI CCGC 2 cut(s) 184, 464
SspMI CTAG 2 cut(s) 62, 335
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 2 cut(s) 607, 783
TaiI ACGT 2 cut(s) 279, 284
TaqI TCGA 5 cut(s) 43, 83, 619, 733, 834
TasI AATT 6 cut(s) 390, 498, 545, 741, 747, 804
TatI WGTACW 1 cut(s) 503
TauI GCSGC 2 cut(s) 186, 466
TfiI GAWTC 4 cut(s) 40, 339, 570, 823
Tru1I TTAA 5 cut(s) 389, 453, 540, 615, 785
Tru9I TTAA 5 cut(s) 389, 453, 540, 615, 785
TseFI GTSAC 2 cut(s) 277, 680
Tsp45I GTSAC 2 cut(s) 277, 680
TspDTI ATGAA 3 cut(s) 280, 370, 391
TspGWI ACGGA 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 2 cut(s) 62, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.