Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006254.1

Orthogroup ID

OG0015365

Physical Location & Seq

Genomic Coordinates Reverse (-)

4767 .. 6337

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006254.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggcaacgagagaaagggagagagatcttgagctcctgattcgagagagggagagggatctagagcttcttattccggtttcgaaccccgaaaatgcacctcccaaatcctccaactcctcgccggaatctccagctacctccacaacatcaacatcatctcattcccatcatacctccggccgcgaggcgttttcaaaagtcattcagagctgggcttccaagaagtttatgacaggatgtgtcattcttcttccaatagccattacattctacgtgacgtggattttcattcgttttgtggatggtttcttctccccaatttataatcatctaggaatcaatgtttttggtcttggattcgccacctctctcatcttcatcttcctaattggtgttttcatgcaatcatggttgggaacttcagttctaaccgtatgggagtggtttattaagaaaatgccgcttataagctatatatatactgcctcaaagcaaattagtacagcaatatcaccagatcagacctctaaggcgttcaaggaagtggctatcataaggcatccaagaattggagaatatgtattgggatttattacaaatacagttattcttaatcgaaggagtgtaggagaagaactctgctgtgtttatatacctaccaaccacctttatcttggagacattgttcttatcagtcccaaagatgttatgaggcctaatctgtcagttcgagaaggaattgaaattgttatttccggaggtatgtcaataccccaattgttaactacaatagaaccactaaacattccaccagaaagagctccccactttgaaaccccaaaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

283

Amino Acids

31.84

Weight (kDa)

7.06

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18460
fragaria_vesca	FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica	MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica	Prupe.1G380400_v2.0.a1
pyrus_communis	pycom15g02730
rosa_chinensis	RchiOBHm_Chr6g0300911
rosa_laevigata	RLG00000011291
rosa_multiflora	Rmu_sc0006254.1_g000003
rosa_roxburghii	Rroxscaffold_7G00167320
rosa_samantha	Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	327, 470
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	758
AciI	CCGC	2 cut(s)	184, 464
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	4 cut(s)	198, 541, 746, 836
AjiI	CACGTC	1 cut(s)	282
AloI	GAACNNNNNNTCC	4 cut(s)	411, 443, 672, 704
AluBI	AGCT	6 cut(s)	34, 67, 137, 213, 474, 824
AluI	AGCT	6 cut(s)	34, 67, 137, 213, 474, 824
Alw21I	GWGCWC	2 cut(s)	36, 826
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	758
AoxI	GGCC	2 cut(s)	181, 716
AsuHPI	GGTGA	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	36, 826
Bbv12I	GWGCWC	2 cut(s)	36, 826
BccI	CCATC	2 cut(s)	177, 299
BcoDI	GTCTC	1 cut(s)	675
BfaI	CTAG	2 cut(s)	62, 335
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	184, 464
BlsI	GCNGC	2 cut(s)	185, 465
BmgBI	CACGTC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpmI	CTGGAG	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	277
BsaWI	WCCGGW	2 cut(s)	76, 758
BsaXI	ACNNNNNCTCC	4 cut(s)	567, 597, 672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
BseAI	TCCGGA	1 cut(s)	758
BseGI	GGATG	3 cut(s)	245, 310, 562
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	109
BseX3I	CGGCCG	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	183, 718
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	36, 826
BsiSI	CCGG	4 cut(s)	77, 125, 180, 759
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	183, 718
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	36, 826
Bsp13I	TCCGGA	1 cut(s)	758
Bsp143I	GATC	3 cut(s)	25, 58, 520
BspACI	CCGC	2 cut(s)	184, 464
BspANI	GGCC	2 cut(s)	183, 718
BspEI	TCCGGA	1 cut(s)	758
BspFNI	CGCG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	83
BssMI	GATC	3 cut(s)	25, 58, 520
Bst4CI	ACNGT	2 cut(s)	436, 607
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	3 cut(s)	245, 310, 562
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	28, 61, 523
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	3 cut(s)	25, 58, 520
BstMCI	CGRYCG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	25, 58
BstYI	RGATCY	2 cut(s)	25, 58
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	183, 718
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	245, 310, 562
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	2 cut(s)	403, 411
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	27, 60, 522
DpnII	GATC	3 cut(s)	25, 58, 520
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
Ecl136II	GAGCTC	2 cut(s)	34, 824
EclXI	CGGCCG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	718
Eco24I	GRGCYC	2 cut(s)	36, 826
Eco52I	CGGCCG	1 cut(s)	181
Eco53kI	GAGCTC	2 cut(s)	34, 824
Eco57I	CTGAAG	1 cut(s)	408
EcoICRI	GAGCTC	2 cut(s)	34, 824
EcoT38I	GRGCYC	2 cut(s)	36, 826
FaeI	CATG	2 cut(s)	406, 414
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	2 cut(s)	402, 410
Fnu4HI	GCNGC	2 cut(s)	184, 464
FokI	GGATG	3 cut(s)	252, 317, 549
FriOI	GRGCYC	2 cut(s)	36, 826
Fsp4HI	GCNGC	2 cut(s)	184, 464
FspBI	CTAG	2 cut(s)	62, 335
GluI	GCNGC	2 cut(s)	184, 464
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	183, 718
HapII	CCGG	4 cut(s)	77, 125, 180, 759
Hin1II	CATG	2 cut(s)	406, 414
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HinfI	GANTC	4 cut(s)	40, 128, 339, 360
HpaI	GTTAAC	1 cut(s)	786
HpaII	CCGG	4 cut(s)	77, 125, 180, 759
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	786
Hpy188I	TCNGA	2 cut(s)	210, 525
Hpy188III	TCNNGA	6 cut(s)	29, 37, 44, 62, 734, 759
Hpy8I	GTNNAC	1 cut(s)	786
HpyAV	CCTTC	2 cut(s)	615, 731
HpyCH4III	ACNGT	2 cut(s)	436, 607
HpyCH4IV	ACGT	2 cut(s)	276, 281
HpyCH4V	TGCA	2 cut(s)	98, 406
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	2 cut(s)	276, 281
Hsp92II	CATG	2 cut(s)	406, 414
Kpn2I	TCCGGA	1 cut(s)	758
KspAI	GTTAAC	1 cut(s)	786
Kzo9I	GATC	3 cut(s)	25, 58, 520
LmnI	GCTCC	2 cut(s)	39, 829
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	62, 335
MaeII	ACGT	2 cut(s)	276, 281
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	27, 60, 522
MboI	GATC	3 cut(s)	25, 58, 520
MboII	GAAGA	6 cut(s)	242, 245, 304, 370, 376, 647
MfeI	CAATTG	1 cut(s)	779
MflI	RGATCY	2 cut(s)	25, 58
MhlI	GDGCHC	2 cut(s)	36, 826
MluCI	AATT	7 cut(s)	321, 390, 498, 570, 741, 747, 779
MmeI	TCCRAC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	758
MseI	TTAA	3 cut(s)	453, 615, 785
MspI	CCGG	4 cut(s)	77, 125, 180, 759
MunI	CAATTG	1 cut(s)	779
MvnI	CGCG	1 cut(s)	186
NdeII	GATC	3 cut(s)	25, 58, 520
NlaIII	CATG	2 cut(s)	406, 414
NmuCI	GTSAC	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	718
PfeI	GAWTC	4 cut(s)	40, 128, 339, 360
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	185, 465
Ppu21I	YACGTR	1 cut(s)	277
PsiI	TTATAA	2 cut(s)	327, 470
Psp124BI	GAGCTC	2 cut(s)	36, 826
PspFI	CCCAGC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	25, 58
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	36, 826
SaqAI	TTAA	3 cut(s)	453, 615, 785
SatI	GCNGC	2 cut(s)	184, 464
Sau3AI	GATC	3 cut(s)	25, 58, 520
SduI	GDGCHC	2 cut(s)	36, 826
SfaNI	GCATC	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	7 cut(s)	321, 390, 498, 570, 741, 747, 779
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	2 cut(s)	184, 464
SspMI	CTAG	2 cut(s)	62, 335
SstI	GAGCTC	2 cut(s)	36, 826
StuI	AGGCCT	1 cut(s)	718
TaaI	ACNGT	2 cut(s)	436, 607
TaiI	ACGT	2 cut(s)	279, 284
TaqI	TCGA	4 cut(s)	43, 83, 619, 733
TasI	AATT	7 cut(s)	321, 390, 498, 570, 741, 747, 779
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	186, 466
TfiI	GAWTC	4 cut(s)	40, 128, 339, 360
Tru1I	TTAA	3 cut(s)	453, 615, 785
Tru9I	TTAA	3 cut(s)	453, 615, 785
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	280, 370, 391
Van91I	CCANNNNNTGG	1 cut(s)	572
XbaI	TCTAGA	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XspI	CTAG	2 cut(s)	62, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.