AT2G18510

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015246
Physical Location & Seq
Reverse (-)
8030960 .. 8033619
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18510.1

Sequence Viewer

Length: 1092 bp
ATGACGACTCGAATCGCTCCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAGAGGAACCAAGACGCCACTGTTTACGTCGGTGGTCTCGATGCTCAGCTTTCTGAAGAATTGCTTTGGGAATTGTTCGTTCAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGATAGAGTGACAAATCTTCATCAGAACTATGGATTCATTGAATATCGTAGTGAGGAAGATGCTGATTATGCGATTAAGGTTCTTAACATGATTAAGCTCCACGGGAAGCCTATACGTGTTAACAAGGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCTGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGTCAATGACTGGACAATATCTCAGTAATCGTCAAATCACAGTCTCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCCATGGTACTCCAGCAGAGAGGCTTTTGGCAGCCACAAATCCAACTGCCCAGAAAAGCAGACCCCATACGCTATTCGCAATGGGCCCTCCATCCAGTGCTCCTCAAGTTAATGGTCTACCACGTCCGTTTGCTAACGGCAGCATGCAACCTGTCCCGATTCCCGCTCCCCGTCAACCACCACCACCTCCTCCACAAGTATATCAAACTCAGCCACCATCCTGGCCATCTCAGCCACAACAACACAGCATGGTCCCACCACCCATGCAATTCCGTCCACCTCAGGGTATGCCTCCGCCACCACCTCCTCAGTTTCTAAATCACCAACAAGGTTTCGGTGGTCCGAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAACATGGAGGATGGCCACCGCAACACATGCAGCAGCAAGGTGGACCACCACAACAACAACAACCACCATACCAACACCATCACATGTCTATGCCTCCACCACCACCACACCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

363

Amino Acids

39.89

Weight (kDa)

7.28

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 27 - 97 2.9e-17 RNA recognition motif
RRM_1 PF00076 114 - 185 4.9e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18510
fragaria_vesca FvH4_7g10600
malus_domestica MD07G1111200.v1.1
prunus_persica Prupe.2G134600_v2.0.a1
pyrus_communis pycom07g09600
rosa_chinensis RchiOBHm_Chr1g0348441
rosa_laevigata RLG00000016689 RLG00000028645 RLG00000028653 RLG00000028658
rosa_multiflora Rmu_sc0000091.1_g000014
rosa_roxburghii Rroxscaffold_4G00306980
rosa_rugosa Rorug01G0194600
rosa_samantha Rh1BG179000 Rh1CG197000
rosa_wichuraiana Rw1G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 709
AciI CCGC 6 cut(s) 54, 756, 887, 941, 944, 992
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 3 cut(s) 43, 815, 986
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 168, 601
AfiI CCNNNNNNNGG 6 cut(s) 26, 60, 367, 449, 875, 1085
AflIII ACRYGT 2 cut(s) 289, 1056
AgsI TTSAA 3 cut(s) 140, 215, 494
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 3 cut(s) 19, 321, 812
AluBI AGCT 6 cut(s) 32, 106, 143, 271, 379, 480
AluI AGCT 6 cut(s) 32, 106, 143, 271, 379, 480
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 2 cut(s) 98, 562
AlwI GGATC 1 cut(s) 434
AoxI GGCC 5 cut(s) 43, 676, 815, 938, 986
ApaI GGGCCC 1 cut(s) 680
ApeKI GCWGC 5 cut(s) 506, 623, 732, 1003, 1006
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 6 cut(s) 146, 676, 677, 844, 932, 1016
AsuHPI GGTGA 1 cut(s) 905
AvaII GGWCC 4 cut(s) 146, 844, 932, 1016
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 1 cut(s) 680
BalI TGGCCA 2 cut(s) 817, 988
BanII GRGCYC 1 cut(s) 680
BauI CACGAG 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 5 cut(s) 493, 635, 744, 1015, 1018
BccI CCATC 5 cut(s) 691, 817, 826, 978, 1059
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 3 cut(s) 21, 323, 814
BcoDI GTCTC 2 cut(s) 98, 562
BfoI RGCGCY 1 cut(s) 595
BisI GCNGC 7 cut(s) 507, 624, 733, 941, 944, 1004, 1007
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 7 cut(s) 508, 625, 734, 942, 945, 1005, 1008
Bme1390I CCNGG 3 cut(s) 21, 323, 814
Bme18I GGWCC 4 cut(s) 146, 844, 932, 1016
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 6 cut(s) 146, 676, 677, 844, 932, 1016
BmiI GGNNCC 3 cut(s) 65, 678, 846
BmrFI CCNGG 3 cut(s) 21, 323, 814
BmsI GCATC 5 cut(s) 88, 223, 311, 493, 506
BpmI CTGGAG 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 3 cut(s) 291, 681, 939
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 5 cut(s) 274, 595, 935, 960, 1084
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 60, 367, 449, 875, 1085
Bse1I ACTGG 3 cut(s) 454, 529, 687
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 3 cut(s) 21, 323, 814
BseDI CCNNGG 5 cut(s) 274, 595, 935, 960, 1084
BseGI GGATG 5 cut(s) 331, 376, 683, 809, 989
BseLI CCNNNNNNNGG 6 cut(s) 26, 60, 367, 449, 875, 1085
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 7 cut(s) 48, 116, 550, 815, 836, 887, 914
BseNI ACTGG 3 cut(s) 454, 529, 687
BseRI GAGGAG 3 cut(s) 684, 771, 888
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 5 cut(s) 493, 635, 744, 1015, 1018
BshFI GGCC 5 cut(s) 45, 678, 817, 940, 988
BsiHKAI GWGCWC 1 cut(s) 694
BslFI GGGAC 2 cut(s) 731, 830
BslI CCNNNNNNNGG 6 cut(s) 26, 60, 367, 449, 875, 1085
BsmAI GTCTC 2 cut(s) 98, 562
BsmFI GGGAC 2 cut(s) 731, 830
BsmI GAATGC 1 cut(s) 972
BsnI GGCC 5 cut(s) 45, 678, 817, 940, 988
Bso31I GGTCTC 1 cut(s) 98
Bsp120I GGGCCC 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 680, 694
Bsp143I GATC 1 cut(s) 439
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp19I CCATGG 2 cut(s) 595, 960
BspACI CCGC 6 cut(s) 54, 756, 887, 941, 944, 992
BspANI GGCC 5 cut(s) 45, 678, 817, 940, 988
BspCNI CTCAG 7 cut(s) 49, 115, 549, 814, 835, 886, 913
BspLI GGNNCC 3 cut(s) 65, 678, 846
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 3 cut(s) 454, 529, 687
BssECI CCNNGG 5 cut(s) 274, 595, 935, 960, 1084
BssMI GATC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 3 cut(s) 595, 960, 1084
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 21, 323, 814
Bst4CI ACNGT 2 cut(s) 79, 556
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 503, 1000
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 8 cut(s) 57, 102, 426, 536, 801, 822, 873, 900
BstDSI CCRYGG 3 cut(s) 274, 595, 960
BstF5I GGATG 5 cut(s) 331, 376, 683, 809, 989
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 2 cut(s) 98, 562
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 242, 503, 823, 1000
BstNI CCWGG 3 cut(s) 21, 323, 814
BstNSI RCATGY 3 cut(s) 739, 1003, 1060
BstSCI CCNGG 3 cut(s) 19, 321, 812
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 5 cut(s) 493, 635, 744, 1015, 1018
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 5 cut(s) 45, 678, 817, 940, 988
BtgI CCRYGG 3 cut(s) 274, 595, 960
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 5 cut(s) 331, 376, 683, 809, 989
BtsIMutI CAGTG 3 cut(s) 75, 403, 694
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 6 cut(s) 146, 676, 677, 844, 932, 1016
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 167, 600
CviAII CATG 9 cut(s) 262, 596, 736, 841, 856, 961, 977, 1000, 1057
CviQI GTAC 2 cut(s) 167, 600
DdeI CTNAG 8 cut(s) 57, 102, 426, 536, 801, 822, 873, 900
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
EaeI YGGCCR 3 cut(s) 43, 815, 986
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 876
Eco130I CCWWGG 3 cut(s) 595, 960, 1084
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 4 cut(s) 146, 844, 932, 1016
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 873
EcoO109I RGGNCCY 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 19, 321, 812
EcoT14I CCWWGG 3 cut(s) 595, 960, 1084
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 3 cut(s) 595, 960, 1084
FaeI CATG 9 cut(s) 265, 599, 739, 844, 859, 964, 980, 1003, 1060
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 2 cut(s) 731, 830
FatI CATG 9 cut(s) 261, 595, 735, 840, 855, 960, 976, 999, 1056
FauI CCCGC 1 cut(s) 763
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 7 cut(s) 507, 624, 733, 941, 944, 1004, 1007
FokI GGATG 5 cut(s) 338, 383, 670, 796, 996
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 7 cut(s) 507, 624, 733, 941, 944, 1004, 1007
GlaI GCGC 1 cut(s) 593
GluI GCNGC 7 cut(s) 507, 624, 733, 941, 944, 1004, 1007
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 5 cut(s) 45, 678, 817, 940, 988
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 594
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 9 cut(s) 265, 599, 739, 844, 859, 964, 980, 1003, 1060
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 2 cut(s) 295, 767
HindII GTYRAC 2 cut(s) 295, 767
HinfI GANTC 6 cut(s) 7, 12, 207, 485, 515, 751
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 6 cut(s) 82, 295, 710, 767, 869, 1016
Hpy188I TCNGA 4 cut(s) 112, 198, 502, 936
Hpy188III TCNNGA 5 cut(s) 95, 308, 443, 459, 748
Hpy8I GTNNAC 6 cut(s) 82, 295, 710, 767, 869, 1016
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 79, 556
HpyCH4IV ACGT 3 cut(s) 84, 289, 715
HpyCH4V TGCA 5 cut(s) 401, 739, 859, 970, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 503, 823, 1000
HpyF3I CTNAG 8 cut(s) 57, 102, 426, 536, 801, 822, 873, 900
HpySE526I ACGT 3 cut(s) 84, 289, 715
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 9 cut(s) 265, 599, 739, 844, 859, 964, 980, 1003, 1060
HspAI GCGC 1 cut(s) 592
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 5 cut(s) 22, 29, 276, 697, 763
Lsp1109I GCAGC 5 cut(s) 493, 635, 744, 1015, 1018
LweI GCATC 5 cut(s) 88, 223, 311, 493, 506
MaeII ACGT 3 cut(s) 84, 289, 715
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 441
MbiI CCGCTC 1 cut(s) 758
MboI GATC 1 cut(s) 439
MboII GAAGA 5 cut(s) 29, 125, 182, 242, 328
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 2 cut(s) 680, 694
MlsI TGGCCA 2 cut(s) 817, 988
MluCI AATT 3 cut(s) 116, 128, 860
MluNI TGGCCA 2 cut(s) 817, 988
MlyI GAGTC 2 cut(s) 479, 524
MmeI TCCRAC 2 cut(s) 7, 659
Mox20I TGGCCA 2 cut(s) 817, 988
MscI TGGCCA 2 cut(s) 817, 988
MseI TTAA 6 cut(s) 156, 249, 258, 267, 294, 702
MslI CAYNNNNRTG 3 cut(s) 965, 975, 1061
Msp20I TGGCCA 2 cut(s) 817, 988
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 21, 323, 814
Mva1269I GAATGC 1 cut(s) 972
MvaI CCWGG 3 cut(s) 21, 323, 814
MwoI GCNNNNNNNGC 4 cut(s) 242, 503, 823, 1000
NcoI CCATGG 2 cut(s) 595, 960
NdeII GATC 1 cut(s) 439
NlaIII CATG 9 cut(s) 265, 599, 739, 844, 859, 964, 980, 1003, 1060
NlaIV GGNNCC 3 cut(s) 65, 678, 846
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 3 cut(s) 739, 1003, 1060
PaeI GCATGC 1 cut(s) 739
PciI ACATGT 1 cut(s) 1056
PciSI GCTCTTC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 972
PfeI GAWTC 3 cut(s) 12, 207, 751
PkrI GCNGC 7 cut(s) 508, 625, 734, 942, 945, 1005, 1008
PleI GAGTC 2 cut(s) 479, 523
PpsI GAGTC 2 cut(s) 479, 523
Ppu21I YACGTR 1 cut(s) 290
PscI ACATGT 1 cut(s) 1056
Psp6I CCWGG 3 cut(s) 19, 321, 812
PspGI CCWGG 3 cut(s) 19, 321, 812
PspN4I GGNNCC 3 cut(s) 65, 678, 846
PspOMI GGGCCC 1 cut(s) 676
PspPI GGNCC 6 cut(s) 146, 676, 677, 844, 932, 1016
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 168, 601
RsaNI GTAC 2 cut(s) 167, 600
RseI CAYNNNNRTG 3 cut(s) 965, 975, 1061
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 6 cut(s) 156, 249, 258, 267, 294, 702
SatI GCNGC 7 cut(s) 507, 624, 733, 941, 944, 1004, 1007
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 6 cut(s) 146, 676, 677, 844, 932, 1016
SchI GAGTC 2 cut(s) 479, 524
ScrFI CCNGG 3 cut(s) 21, 323, 814
SduI GDGCHC 2 cut(s) 680, 694
SfaNI GCATC 5 cut(s) 88, 223, 311, 493, 506
SinI GGWCC 4 cut(s) 146, 844, 932, 1016
SmiMI CAYNNNNRTG 3 cut(s) 965, 975, 1061
SmlI CTYRAG 3 cut(s) 306, 696, 954
SmoI CTYRAG 3 cut(s) 306, 696, 954
SphI GCATGC 1 cut(s) 739
Sse9I AATT 3 cut(s) 116, 128, 860
SsiI CCGC 6 cut(s) 54, 756, 887, 941, 944, 992
StyD4I CCNGG 3 cut(s) 19, 321, 812
StyI CCWWGG 3 cut(s) 595, 960, 1084
TaaI ACNGT 2 cut(s) 79, 556
TaiI ACGT 3 cut(s) 87, 292, 718
TaqI TCGA 2 cut(s) 10, 96
TasI AATT 3 cut(s) 116, 128, 860
TauI GCSGC 2 cut(s) 943, 946
TfiI GAWTC 3 cut(s) 12, 207, 751
Tru1I TTAA 6 cut(s) 156, 249, 258, 267, 294, 702
Tru9I TTAA 6 cut(s) 156, 249, 258, 267, 294, 702
TscAI CASTG 3 cut(s) 82, 403, 694
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 5 cut(s) 506, 623, 732, 1003, 1006
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 182, 199, 334, 463
TspGWI ACGGA 2 cut(s) 708, 854
TspRI CASTG 3 cut(s) 82, 403, 694
VpaK11BI GGWCC 4 cut(s) 146, 844, 932, 1016
XceI RCATGY 3 cut(s) 739, 1003, 1060
XmiI GTMKAC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.