MD07G1111200.v1.1

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015246
Physical Location & Seq
Reverse (-)
12776998 .. 12780552
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1111200.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGACGACTCGAATAGCTCCGGGAGTAGGAGCCAACTTGCTGGGCCAACATTCCGCCGAGAGAAACCAAGACGCCACTGCGTACGTCGGCAATCTGGACCCTCAGGTTTCCGAAGAATTGCTGTGGGAGTTGTTTGTTCAAGCTGGCCCTGTTGTGAATGTGTATGTTCCCAAGGATAGAGTGACAAACCTTCATCAAGGATATGGATTTGTTGAATTCCGTAGTGAAGAGGATGCTGATTATGCAATCAAGGTGCTTAATATGATCAAACTTTACGGCAAACCAATACGTGTAAATAAGGCATCCCAAGACAAAAAGAGCTTGGATGTAGGGGCAAACCTTTTCGTTGGAAATCTCGATCCTGATGTGGATGAGAAGCTTCTCTACGATACATTCAGTGCATTTGGAGTCATAGTTACAAATCCAAAGATAATGAGAGACCCTGATACTGGAAATTCCCGTGGATTTGGCTTCATTAGTTATGATTCTTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGCCAGTATCTGTGCAATCGTCAAATAACAGTGTCATATGCCTATAAGAAGGATACTAGAGGAGAGCGTCATGGTACTCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCTACTTCAAAAAGCCGGCCTCATACACTGTTTGCTAGTGGTCCTCCAACACTTGCCAACGGTCCTCAGTCCAATGGTACCATGGGTGCTCCTGTGCCTCCACGACCTTTCGCAAATGGTGGTCTCGGTATTCCTCCTCTTCGCCCACCACCCCCGCAAGGCATGGGTTTCCCACCCATGCAGATGGCTGTACAACCAACCTGGCAAGGTCAGCCACAGCAACCAGGTCAAATGCCTCCACCTCAAATGCAGCAATTCAGACCGCCGCCAAACATGCCGCCACCTCCTCCACAGTCCGCTCCAGCTCCTCCAAGGTCGCTTCCGCCACCTATGGCAATGGGAAACCAACAACCTATGTGGCGACCGCCCCCTCCCCCTCAGATGAGGCCACCCAACATGCAACATGCGTCAATGCCCCCACCTCCGCCTCTCAATAACCCTCTGCCACCGCCCCCTATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

366

Amino Acids

39.69

Weight (kDa)

8.56

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 97 4.4e-20 RNA recognition motif
RRM_1 PF00076 114 - 185 1.2e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18510
fragaria_vesca FvH4_7g10600
malus_domestica MD07G1111200.v1.1
prunus_persica Prupe.2G134600_v2.0.a1
pyrus_communis pycom07g09600
rosa_chinensis RchiOBHm_Chr1g0348441
rosa_laevigata RLG00000016689 RLG00000028645 RLG00000028653 RLG00000028658
rosa_multiflora Rmu_sc0000091.1_g000014
rosa_roxburghii Rroxscaffold_4G00306980
rosa_rugosa Rorug01G0194600
rosa_samantha Rh1BG179000 Rh1CG197000
rosa_wichuraiana Rw1G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 932
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 2 cut(s) 215, 454
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 4 cut(s) 83, 601, 712, 825
AfiI CCNNNNNNNGG 3 cut(s) 26, 449, 791
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 3 cut(s) 140, 215, 642
AjnI CCWGG 2 cut(s) 833, 856
AluBI AGCT 6 cut(s) 17, 143, 321, 379, 509, 938
AluI AGCT 6 cut(s) 17, 143, 321, 379, 509, 938
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 2 cut(s) 432, 761
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 535
AoxI GGCC 5 cut(s) 43, 145, 526, 650, 1019
ApeKI GCWGC 3 cut(s) 506, 623, 883
ApoI RAATTY 2 cut(s) 215, 454
Asp718I GGTACC 1 cut(s) 710
AspS9I GGNCC 5 cut(s) 43, 97, 146, 674, 695
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 3 cut(s) 97, 674, 695
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 1 cut(s) 710
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 3 cut(s) 518, 610, 895
BccI CCATC 1 cut(s) 811
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 835, 858
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 432, 761
BfaI CTAG 2 cut(s) 582, 669
BfuI GTATCC 1 cut(s) 571
BisI GCNGC 5 cut(s) 507, 624, 884, 899, 911
BlsI GCNGC 5 cut(s) 508, 625, 885, 900, 912
Bme1390I CCNGG 3 cut(s) 21, 835, 858
Bme18I GGWCC 3 cut(s) 97, 674, 695
BmgT120I GGNCC 5 cut(s) 43, 97, 146, 674, 695
BmiI GGNNCC 3 cut(s) 31, 99, 712
BmrFI CCNGG 3 cut(s) 21, 835, 858
BmsI GCATC 4 cut(s) 223, 311, 493, 506
BpmI CTGGAG 2 cut(s) 588, 918
BpuMI CCSGG 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 432, 761
BsaJI CCNNGG 4 cut(s) 171, 460, 714, 944
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 449, 791
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 454, 529
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 525, 975
BseBI CCWGG 2 cut(s) 835, 858
BseDI CCNNGG 4 cut(s) 171, 460, 714, 944
BseGI GGATG 4 cut(s) 238, 302, 331, 376
BseLI CCNNNNNNNGG 3 cut(s) 26, 449, 791
BseMI GCAATG 2 cut(s) 525, 975
BseMII CTCAG 3 cut(s) 116, 713, 1025
BseNI ACTGG 2 cut(s) 454, 529
BseRI GAGGAG 4 cut(s) 600, 759, 909, 930
BseXI GCAGC 3 cut(s) 518, 610, 895
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 5 cut(s) 45, 147, 528, 652, 1021
BshNI GGYRCC 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 998
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 2 cut(s) 20, 649
BsiWI CGTACG 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 26, 449, 791
BsmAI GTCTC 2 cut(s) 432, 761
BsnI GGCC 5 cut(s) 45, 147, 528, 652, 1021
Bso31I GGTCTC 2 cut(s) 432, 761
Bsp1286I GDGCHC 1 cut(s) 724
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 2 cut(s) 264, 358
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 5 cut(s) 45, 147, 528, 652, 1021
BspCNI CTCAG 3 cut(s) 115, 712, 1024
BspLI GGNNCC 3 cut(s) 31, 99, 712
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 2 cut(s) 432, 761
BsrBI CCGCTC 1 cut(s) 932
BsrDI GCAATG 2 cut(s) 525, 975
BsrFI RCCGGY 1 cut(s) 648
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 454, 529
BssAI RCCGGY 1 cut(s) 648
BssECI CCNNGG 4 cut(s) 171, 460, 714, 944
BssMI GATC 2 cut(s) 264, 358
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 171, 714, 944
Bst2UI CCWGG 2 cut(s) 835, 858
Bst4CI ACNGT 4 cut(s) 556, 663, 695, 927
Bst6I CTCTTC 2 cut(s) 222, 777
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 145, 628, 650
BstDEI CTNAG 3 cut(s) 102, 699, 1011
BstDSI CCRYGG 2 cut(s) 460, 714
BstF5I GGATG 4 cut(s) 238, 302, 331, 376
BstKTI GATC 2 cut(s) 267, 361
BstMAI GTCTC 2 cut(s) 432, 761
BstMBI GATC 2 cut(s) 264, 358
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 5 cut(s) 242, 503, 515, 844, 907
BstNI CCWGG 2 cut(s) 835, 858
BstNSI RCATGY 3 cut(s) 910, 1033, 1040
BstSCI CCNGG 3 cut(s) 19, 833, 856
BstV1I GCAGC 3 cut(s) 518, 610, 895
BstXI CCANNNNNNTGG 2 cut(s) 40, 817
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 5 cut(s) 45, 147, 528, 652, 1021
BtgI CCRYGG 2 cut(s) 460, 714
BtsCI GGATG 4 cut(s) 238, 302, 331, 376
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 4 cut(s) 75, 403, 561, 659
Cac8I GCNNGC 3 cut(s) 145, 628, 650
CaiI CAGNNNCTG 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 5 cut(s) 43, 97, 146, 674, 695
CseI GACGC 3 cut(s) 80, 581, 1029
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 4 cut(s) 82, 600, 711, 824
CspCI CAANNNNNGTGG 2 cut(s) 971, 1006
CviAII CATG 7 cut(s) 596, 715, 796, 811, 907, 1030, 1037
CviQI GTAC 4 cut(s) 82, 600, 711, 824
DdeI CTNAG 3 cut(s) 102, 699, 1011
DpnI GATC 2 cut(s) 266, 360
DpnII GATC 2 cut(s) 264, 358
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 222, 777
EarI CTCTTC 2 cut(s) 222, 777
EciI GGCGGA 3 cut(s) 43, 945, 1047
Eco130I CCWWGG 3 cut(s) 171, 714, 944
Eco31I GGTCTC 2 cut(s) 432, 761
Eco47I GGWCC 3 cut(s) 97, 674, 695
Eco81I CCTNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 833, 856
EcoT14I CCWWGG 3 cut(s) 171, 714, 944
ErhI CCWWGG 3 cut(s) 171, 714, 944
FaeI CATG 7 cut(s) 599, 718, 799, 814, 910, 1033, 1040
FatI CATG 7 cut(s) 595, 714, 795, 810, 906, 1029, 1036
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 5 cut(s) 507, 624, 884, 899, 911
FokI GGATG 4 cut(s) 245, 289, 338, 383
Fsp4HI GCNGC 5 cut(s) 507, 624, 884, 899, 911
FspBI CTAG 2 cut(s) 582, 669
GluI GCNGC 5 cut(s) 507, 624, 884, 899, 911
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 588, 918
HaeIII GGCC 5 cut(s) 45, 147, 528, 652, 1021
HapII CCGG 2 cut(s) 20, 649
HgaI GACGC 3 cut(s) 80, 581, 1029
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 7 cut(s) 599, 718, 799, 814, 910, 1033, 1040
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 7, 408, 485
HpaII CCGG 2 cut(s) 20, 649
Hpy188I TCNGA 4 cut(s) 112, 502, 893, 1014
Hpy188III TCNNGA 3 cut(s) 95, 356, 362
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 200, 568
HpyCH4III ACNGT 4 cut(s) 556, 663, 695, 927
HpyCH4IV ACGT 2 cut(s) 84, 289
HpyCH4V TGCA 8 cut(s) 245, 401, 506, 540, 626, 814, 883, 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 503, 515, 844, 907
HpyF3I CTNAG 3 cut(s) 102, 699, 1011
HpySE526I ACGT 2 cut(s) 84, 289
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 7 cut(s) 599, 718, 799, 814, 910, 1033, 1040
KpnI GGTACC 1 cut(s) 714
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 264, 358
LmnI GCTCC 5 cut(s) 22, 29, 727, 937, 943
Lsp1109I GCAGC 3 cut(s) 518, 610, 895
LweI GCATC 4 cut(s) 223, 311, 493, 506
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 2 cut(s) 582, 669
MaeII ACGT 2 cut(s) 84, 289
MaeIII GTNAC 2 cut(s) 181, 415
MalI GATC 2 cut(s) 266, 360
MbiI CCGCTC 1 cut(s) 932
MboI GATC 2 cut(s) 264, 358
MboII GAAGA 3 cut(s) 125, 239, 764
MhlI GDGCHC 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 116, 215, 454, 887, 1093
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 2 cut(s) 328, 704
Mox20I TGGCCA 1 cut(s) 528
MroNI GCCGGC 1 cut(s) 648
MscI TGGCCA 1 cut(s) 528
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 2 cut(s) 20, 649
MspR9I CCNGG 3 cut(s) 21, 835, 858
MvaI CCWGG 2 cut(s) 835, 858
MwoI GCNNNNNNNGC 5 cut(s) 242, 503, 515, 844, 907
NaeI GCCGGC 1 cut(s) 650
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 714
NdeI CATATG 1 cut(s) 562
NdeII GATC 2 cut(s) 264, 358
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 7 cut(s) 599, 718, 799, 814, 910, 1033, 1040
NlaIV GGNNCC 3 cut(s) 31, 99, 712
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 3 cut(s) 910, 1033, 1040
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 485
Pfl23II CGTACG 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 5 cut(s) 508, 625, 885, 900, 912
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 833, 856
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 833, 856
PspLI CGTACG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 31, 99, 712
PspPI GGNCC 5 cut(s) 43, 97, 146, 674, 695
PstNI CAGNNNCTG 1 cut(s) 535
RsaI GTAC 4 cut(s) 83, 601, 712, 825
RsaNI GTAC 4 cut(s) 82, 600, 711, 824
RseI CAYNNNNRTG 1 cut(s) 815
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 5 cut(s) 507, 624, 884, 899, 911
Sau3AI GATC 2 cut(s) 264, 358
Sau96I GGNCC 5 cut(s) 43, 97, 146, 674, 695
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 3 cut(s) 21, 835, 858
SduI GDGCHC 1 cut(s) 724
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 4 cut(s) 223, 311, 493, 506
SinI GGWCC 3 cut(s) 97, 674, 695
SmiMI CAYNNNNRTG 1 cut(s) 815
Sse9I AATT 5 cut(s) 116, 215, 454, 887, 1093
SspMI CTAG 2 cut(s) 582, 669
StyD4I CCNGG 3 cut(s) 19, 833, 856
StyI CCWWGG 3 cut(s) 171, 714, 944
TaaI ACNGT 4 cut(s) 556, 663, 695, 927
TaiI ACGT 2 cut(s) 87, 292
TaqI TCGA 2 cut(s) 10, 357
TasI AATT 5 cut(s) 116, 215, 454, 887, 1093
TatI WGTACW 1 cut(s) 823
TauI GCSGC 2 cut(s) 901, 913
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 4 cut(s) 82, 403, 561, 666
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 506, 623, 883
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 182, 463, 536
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 4 cut(s) 82, 403, 561, 666
VpaK11BI GGWCC 3 cut(s) 97, 674, 695
XapI RAATTY 2 cut(s) 215, 454
XceI RCATGY 3 cut(s) 910, 1033, 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XspI CTAG 2 cut(s) 582, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.