Prupe.2G134600_v2.0.a1

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015246
Physical Location & Seq
Reverse (-)
19240525 .. 19243814
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G134600.1

Sequence Viewer

Length: 1098 bp
ATGACGACTCGAATAGCTCCAGGAGTAGGAGCAAACTTGCTGGGCCAGCACTCCGCCGAGAGAAACCAAGACGCTACTGCTTACGTCGGCAATCTCGACCCTCAGGTTTCTGAAGAATTACTGTGGGAGCTGTTTGTTCAAGCTGGCCCTGTTGTGAATGTGTATGTTCCCAAAGATAGAGTGACAAACCTTCATCAAGGATATGGATTTGTTGAATTCCGTAGCGAAGAGGACGCTGATTATGCTATCAAGGTGCTTAATATGATCAAACTTTACGGGAAGCCAATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTAGGGGCAAACCTTTTCGTTGGAAATCTTGATGTTGATGTGGATGAGAAACTCCTCTATGATACATTCAGTGCATTTGGAGTCATAGTTACAAATCCTAAGATAATGAGAGACCCCGAAACCGGAAATTCCCGTGGATTTGGCTTCATTAGCTATGATTCCTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGCCAGTATCTATGCAATCGTCAAATAACAGTATCATATGCATATAAGAAGGACACTAAAGGGGAGCGTCATGGTACTCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCTACTTCAAAGAGCAGGCCTCATACACTGTTCGCTAGTGGCCCCCCAACACTTGCCAATGGTCCTCAGTCCAATGGTACCATGGGTGCTCCAGTGCCTCCACGACCTTTTGCAAATGGAGGTGTTGGTCTTCCTCCACTTCGCCCACCACCTCCTCAAGGTATGGCGTTCCCACCCATGCAGATGGGTGTACAACCAACCTGGCAGGGTCAGCCACAGCAACCAGGTCAAATGCCTCCACCGCAAATGCAACAGTTCAGACCTCCTCCTCCAAACATGCCACAACCCCCTCCACAGGGTGCTCCGGCTCCTCCAAGGTCTCTTCCACCGCCTATGGCCATGGGAAACCAACAACCTATGTGGCGACCACCCCCACCTCAAATGAGGCCCCCGAATATGCAACACGCATCAATGCCCCCACCTCCCCCCCTCAATAACCCTCCACTACCGCCCCCTATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

366

Amino Acids

39.63

Weight (kDa)

8.54

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18510
fragaria_vesca FvH4_7g10600
malus_domestica MD07G1111200.v1.1
prunus_persica Prupe.2G134600_v2.0.a1
pyrus_communis pycom07g09600
rosa_chinensis RchiOBHm_Chr1g0348441
rosa_laevigata RLG00000016689 RLG00000028645 RLG00000028653 RLG00000028658
rosa_multiflora Rmu_sc0000091.1_g000014
rosa_roxburghii Rroxscaffold_4G00306980
rosa_rugosa Rorug01G0194600
rosa_samantha Rh1BG179000 Rh1CG197000
rosa_wichuraiana Rw1G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 710
AciI CCGC 4 cut(s) 54, 875, 962, 1082
AcoI YGGCCR 2 cut(s) 526, 969
AcsI RAATTY 2 cut(s) 215, 454
AcuI CTGAAG 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 932
AfaI GTAC 3 cut(s) 601, 712, 825
AfiI CCNNNNNNNGG 5 cut(s) 26, 449, 791, 928, 929
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 3 cut(s) 140, 215, 642
AjnI CCWGG 3 cut(s) 19, 833, 856
AluBI AGCT 6 cut(s) 17, 130, 143, 321, 480, 509
AluI AGCT 6 cut(s) 17, 130, 143, 321, 480, 509
Alw21I GWGCWC 2 cut(s) 724, 937
Alw26I GTCTC 2 cut(s) 432, 957
AoxI GGCC 7 cut(s) 43, 145, 526, 650, 673, 969, 1019
ApeKI GCWGC 2 cut(s) 506, 623
ApoI RAATTY 2 cut(s) 215, 454
Asp718I GGTACC 1 cut(s) 710
AspS9I GGNCC 5 cut(s) 43, 146, 674, 695, 1020
AvaII GGWCC 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 2 cut(s) 528, 971
BanI GGYRCC 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 2 cut(s) 724, 937
BbvI GCAGC 2 cut(s) 518, 610
BccI CCATC 1 cut(s) 811
BciT130I CCWGG 3 cut(s) 21, 835, 858
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 432, 957
BfaI CTAG 1 cut(s) 669
BisI GCNGC 2 cut(s) 507, 624
BlsI GCNGC 2 cut(s) 508, 625
Bme1390I CCNGG 3 cut(s) 21, 835, 858
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 5 cut(s) 43, 146, 674, 695, 1020
BmiI GGNNCC 4 cut(s) 676, 712, 942, 1022
BmrFI CCNGG 3 cut(s) 21, 835, 858
BmsI GCATC 4 cut(s) 311, 493, 506, 1049
BpiI GAAGAC 1 cut(s) 755
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 2 cut(s) 588, 708
BpuEI CTTGAG 1 cut(s) 774
BsaAI YACGTR 1 cut(s) 290
BsaI GGTCTC 2 cut(s) 432, 957
BsaJI CCNNGG 4 cut(s) 460, 714, 947, 972
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 449, 791, 928, 929
Bse1I ACTGG 2 cut(s) 529, 725
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 3 cut(s) 21, 835, 858
BseDI CCNNGG 4 cut(s) 460, 714, 947, 972
BseGI GGATG 3 cut(s) 302, 331, 376
BseLI CCNNNNNNNGG 5 cut(s) 26, 449, 791, 928, 929
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 116, 713
BseNI ACTGG 2 cut(s) 529, 725
BseRI GAGGAG 5 cut(s) 371, 777, 888, 891, 933
BseXI GCAGC 2 cut(s) 518, 610
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 7 cut(s) 45, 147, 528, 652, 675, 971, 1021
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 724, 937
BsiSI CCGG 2 cut(s) 450, 938
BslI CCNNNNNNNGG 5 cut(s) 26, 449, 791, 928, 929
BsmAI GTCTC 2 cut(s) 432, 957
BsnI GGCC 7 cut(s) 45, 147, 528, 652, 675, 971, 1021
Bso31I GGTCTC 2 cut(s) 432, 957
Bsp1286I GDGCHC 2 cut(s) 724, 937
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 1 cut(s) 264
Bsp19I CCATGG 2 cut(s) 714, 972
BspACI CCGC 4 cut(s) 54, 875, 962, 1082
BspANI GGCC 7 cut(s) 45, 147, 528, 652, 675, 971, 1021
BspCNI CTCAG 2 cut(s) 115, 712
BspLI GGNNCC 4 cut(s) 676, 712, 942, 1022
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 2 cut(s) 432, 957
BsrDI GCAATG 1 cut(s) 525
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 529, 725
BssECI CCNNGG 4 cut(s) 460, 714, 947, 972
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 3 cut(s) 714, 947, 972
Bst2UI CCWGG 3 cut(s) 21, 835, 858
Bst4CI ACNGT 4 cut(s) 123, 556, 663, 888
Bst6I CTCTTC 2 cut(s) 222, 960
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 4 cut(s) 47, 145, 628, 650
BstDEI CTNAG 3 cut(s) 102, 426, 699
BstDSI CCRYGG 3 cut(s) 460, 714, 972
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 302, 331, 376
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 432, 957
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 7 cut(s) 46, 242, 477, 503, 515, 844, 874
BstNI CCWGG 3 cut(s) 21, 835, 858
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 3 cut(s) 19, 833, 856
BstV1I GCAGC 2 cut(s) 518, 610
BstV2I GAAGAC 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 817
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 7 cut(s) 45, 147, 528, 652, 675, 971, 1021
BtgI CCRYGG 3 cut(s) 460, 714, 972
BtsCI GGATG 3 cut(s) 302, 331, 376
BtsIMutI CAGTG 3 cut(s) 403, 659, 732
Cac8I GCNNGC 4 cut(s) 47, 145, 628, 650
Cfr13I GGNCC 5 cut(s) 43, 146, 674, 695, 1020
CseI GACGC 3 cut(s) 80, 242, 581
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 3 cut(s) 600, 711, 824
CspCI CAANNNNNGTGG 2 cut(s) 974, 1009
CviAII CATG 5 cut(s) 596, 715, 811, 910, 973
CviQI GTAC 3 cut(s) 600, 711, 824
DdeI CTNAG 3 cut(s) 102, 426, 699
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
DraIII CACNNNGTG 1 cut(s) 932
EaeI YGGCCR 2 cut(s) 526, 969
Eam1104I CTCTTC 2 cut(s) 222, 960
EarI CTCTTC 2 cut(s) 222, 960
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 714, 947, 972
Eco147I AGGCCT 1 cut(s) 652
Eco31I GGTCTC 2 cut(s) 432, 957
Eco47I GGWCC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 19, 833, 856
EcoT14I CCWWGG 3 cut(s) 714, 947, 972
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 3 cut(s) 714, 947, 972
FaeI CATG 5 cut(s) 599, 718, 814, 913, 976
FatI CATG 5 cut(s) 595, 714, 810, 909, 972
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 507, 624
FokI GGATG 3 cut(s) 289, 338, 383
Fsp4HI GCNGC 2 cut(s) 507, 624
FspBI CTAG 1 cut(s) 669
GluI GCNGC 2 cut(s) 507, 624
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 588, 708
HaeIII GGCC 7 cut(s) 45, 147, 528, 652, 675, 971, 1021
HapII CCGG 2 cut(s) 450, 938
HgaI GACGC 3 cut(s) 80, 242, 581
Hin1II CATG 5 cut(s) 599, 718, 814, 913, 976
HinfI GANTC 3 cut(s) 7, 408, 485
HpaII CCGG 2 cut(s) 450, 938
Hpy166II GTNNAC 1 cut(s) 824
Hpy188I TCNGA 3 cut(s) 112, 502, 893
Hpy188III TCNNGA 2 cut(s) 95, 356
Hpy8I GTNNAC 1 cut(s) 824
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 200, 568
HpyCH4III ACNGT 4 cut(s) 123, 556, 663, 888
HpyCH4IV ACGT 2 cut(s) 84, 289
HpyCH4V TGCA 9 cut(s) 401, 506, 540, 566, 626, 746, 814, 883, 1033
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 242, 477, 503, 515, 844, 874
HpyF3I CTNAG 3 cut(s) 102, 426, 699
HpySE526I ACGT 2 cut(s) 84, 289
Hsp92II CATG 5 cut(s) 599, 718, 814, 913, 976
KpnI GGTACC 1 cut(s) 714
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 7 cut(s) 22, 29, 127, 589, 727, 940, 946
Lsp1109I GCAGC 2 cut(s) 518, 610
LweI GCATC 4 cut(s) 311, 493, 506, 1049
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 1 cut(s) 669
MaeII ACGT 2 cut(s) 84, 289
MaeIII GTNAC 2 cut(s) 181, 415
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 4 cut(s) 125, 239, 755, 947
MhlI GDGCHC 2 cut(s) 724, 937
MlsI TGGCCA 2 cut(s) 528, 971
MluCI AATT 3 cut(s) 116, 215, 454
MluNI TGGCCA 2 cut(s) 528, 971
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 328
Mox20I TGGCCA 2 cut(s) 528, 971
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 2 cut(s) 528, 971
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 815
Msp20I TGGCCA 2 cut(s) 528, 971
MspI CCGG 2 cut(s) 450, 938
MspR9I CCNGG 3 cut(s) 21, 835, 858
MvaI CCWGG 3 cut(s) 21, 835, 858
MwoI GCNNNNNNNGC 7 cut(s) 46, 242, 477, 503, 515, 844, 874
NcoI CCATGG 2 cut(s) 714, 972
NdeI CATATG 1 cut(s) 562
NdeII GATC 1 cut(s) 264
NlaIII CATG 5 cut(s) 599, 718, 814, 913, 976
NlaIV GGNNCC 4 cut(s) 676, 712, 942, 1022
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 913
PceI AGGCCT 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 508, 625
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 3 cut(s) 19, 833, 856
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 3 cut(s) 19, 833, 856
PspN4I GGNNCC 4 cut(s) 676, 712, 942, 1022
PspPI GGNCC 5 cut(s) 43, 146, 674, 695, 1020
RsaI GTAC 3 cut(s) 601, 712, 825
RsaNI GTAC 3 cut(s) 600, 711, 824
RseI CAYNNNNRTG 1 cut(s) 815
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 507, 624
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 5 cut(s) 43, 146, 674, 695, 1020
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 3 cut(s) 21, 835, 858
SduI GDGCHC 2 cut(s) 724, 937
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 4 cut(s) 311, 493, 506, 1049
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 789
SmoI CTYRAG 1 cut(s) 789
Sse9I AATT 3 cut(s) 116, 215, 454
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 4 cut(s) 54, 875, 962, 1082
SspMI CTAG 1 cut(s) 669
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 3 cut(s) 19, 833, 856
StyI CCWWGG 3 cut(s) 714, 947, 972
TaaI ACNGT 4 cut(s) 123, 556, 663, 888
TaiI ACGT 2 cut(s) 87, 292
TaqI TCGA 2 cut(s) 10, 96
TasI AATT 3 cut(s) 116, 215, 454
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 403, 666, 732
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 506, 623
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 182, 463, 536
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 3 cut(s) 403, 666, 732
VpaK11BI GGWCC 1 cut(s) 695
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 2 cut(s) 215, 454
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XspI CTAG 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.