RLG00000028653

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015246
Physical Location & Seq
Forward (+)
25668859 .. 25669523
665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028653

Sequence Viewer

Length: 564 bp
ATGCATATAACTGATAAGAAAGACACTAAAGGGGAGCGTCATGGTACTCCGGCAGAGAGAGTTTTGGCTGCTAGCAATCCTACATCTAAGAGCCGGCCTCACACACTGTTTGCTAGTGGGCCTCCAACACTTCCCAATGGTTCTCAGGCCAATGGTACCATGGGTGCTCCAGTGCCTCCGCGTCCCTTTGCAAATGTCGGTGTTGGTCCAGGTCTGATTCCGCCGCTTCGTCCACAACCCCCCCAAGGTATGGCTTTCCCGCCGATGCAGATGGCTGTTCAACCAACTTGGCAAGGTCAGCCTCAACAACCAGGTCAACCAATGATGCCTCCACCGCCAATGCAGCAGTTCAGACCTGCTCCCCCAAACATGCCGCCACCCCTTCCACAGGCACCTCCAGCTCCTCCACGGTCGCTTCCACCTCCTATGGCTATGGGCAACCAACAACAGATGTGGCGGCCACCACCTCCCCCTCAAATGAGGCCTCCTAACATACAACACGCATCAATGCCGCCACCTCCCCCACTTAACAACCCACCCCTACCGCCACCTCCTATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

188

Amino Acids

19.96

Weight (kDa)

11.91

Isoelectric Point (pI)

86.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18510
fragaria_vesca FvH4_7g10600
malus_domestica MD07G1111200.v1.1
prunus_persica Prupe.2G134600_v2.0.a1
pyrus_communis pycom07g09600
rosa_chinensis RchiOBHm_Chr1g0348441
rosa_laevigata RLG00000016689 RLG00000028645 RLG00000028653 RLG00000028658
rosa_multiflora Rmu_sc0000091.1_g000014
rosa_roxburghii Rroxscaffold_4G00306980
rosa_rugosa Rorug01G0194600
rosa_samantha Rh1BG179000 Rh1CG197000
rosa_wichuraiana Rw1G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
Acc65I GGTACC 1 cut(s) 155
AccB1I GGYRCC 2 cut(s) 155, 391
AccB7I CCANNNNNTGG 1 cut(s) 250
AccII CGCG 1 cut(s) 181
AciI CCGC 9 cut(s) 179, 221, 224, 260, 335, 374, 457, 512, 545
AcoI YGGCCR 1 cut(s) 458
AfaI GTAC 2 cut(s) 46, 157
AfiI CCNNNNNNNGG 3 cut(s) 245, 250, 388
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 2 cut(s) 208, 310
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 5 cut(s) 95, 119, 147, 458, 482
ApeKI GCWGC 2 cut(s) 68, 343
Asp718I GGTACC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 119, 206
AsuNHI GCTAGC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 206
BanI GGYRCC 2 cut(s) 155, 391
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 55, 355
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 210, 312
BfaI CTAG 2 cut(s) 72, 114
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 6 cut(s) 69, 224, 344, 374, 458, 512
BlsI GCNGC 6 cut(s) 70, 225, 345, 375, 459, 513
Bme1390I CCNGG 2 cut(s) 210, 312
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 119, 206
BmiI GGNNCC 2 cut(s) 157, 393
BmrFI CCNGG 2 cut(s) 210, 312
BmsI GCATC 3 cut(s) 255, 315, 512
BmtI GCTAGC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 2 cut(s) 153, 381
BsaJI CCNNGG 3 cut(s) 159, 244, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 250, 388
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 2 cut(s) 210, 312
BseDI CCNNGG 3 cut(s) 159, 244, 407
BseLI CCNNNNNNNGG 3 cut(s) 245, 250, 388
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 55, 355
Bsh1236I CGCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 413
BshFI GGCC 5 cut(s) 97, 121, 149, 460, 484
BshNI GGYRCC 2 cut(s) 155, 391
BsiEI CGRYCG 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 50, 94
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 245, 250, 388
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 5 cut(s) 97, 121, 149, 460, 484
Bsp1286I GDGCHC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 9 cut(s) 179, 221, 224, 260, 335, 374, 457, 512, 545
BspANI GGCC 5 cut(s) 97, 121, 149, 460, 484
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 157, 393
BspMI ACCTGC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 75
BspT107I GGYRCC 2 cut(s) 155, 391
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 159, 244, 407
BssT1I CCWWGG 2 cut(s) 159, 244
Bst2UI CCWGG 2 cut(s) 210, 312
Bst4CI ACNGT 2 cut(s) 108, 411
BstC8I GCNNGC 2 cut(s) 73, 95
BstDEI CTNAG 2 cut(s) 87, 144
BstDSI CCRYGG 2 cut(s) 159, 407
BstENI CCTNNNNNAGG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 413
BstMWI GCNNNNNNNGC 4 cut(s) 298, 334, 343, 398
BstNI CCWGG 2 cut(s) 210, 312
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 208, 310
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 55, 355
BsuRI GGCC 5 cut(s) 97, 121, 149, 460, 484
BtgI CCRYGG 2 cut(s) 159, 407
BtsIMutI CAGTG 2 cut(s) 104, 177
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 73, 95
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 119, 206
CseI GACGC 2 cut(s) 26, 170
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 45, 156
CspCI CAANNNNNGTGG 2 cut(s) 434, 469
CviAII CATG 3 cut(s) 41, 160, 370
CviQI GTAC 2 cut(s) 45, 156
DdeI CTNAG 2 cut(s) 87, 144
EaeI YGGCCR 1 cut(s) 458
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 159, 244
Eco147I AGGCCT 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 208, 310
EcoT14I CCWWGG 2 cut(s) 159, 244
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 159, 244
FaeI CATG 3 cut(s) 44, 163, 373
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 40, 159, 369
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 69, 224, 344, 374, 458, 512
Fsp4HI GCNGC 6 cut(s) 69, 224, 344, 374, 458, 512
FspBI CTAG 2 cut(s) 72, 114
GluI GCNGC 6 cut(s) 69, 224, 344, 374, 458, 512
GsuI CTGGAG 2 cut(s) 153, 381
HaeIII GGCC 5 cut(s) 97, 121, 149, 460, 484
HapII CCGG 2 cut(s) 50, 94
HgaI GACGC 2 cut(s) 26, 170
Hin1II CATG 3 cut(s) 44, 163, 373
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HinfI GANTC 1 cut(s) 217
HpaII CCGG 2 cut(s) 50, 94
Hpy166II GTNNAC 2 cut(s) 233, 317
Hpy188I TCNGA 2 cut(s) 216, 353
Hpy8I GTNNAC 2 cut(s) 233, 317
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 108, 411
HpyCH4V TGCA 4 cut(s) 4, 191, 268, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 334, 343, 398
HpyF3I CTNAG 2 cut(s) 87, 144
Hsp92II CATG 3 cut(s) 44, 163, 373
KpnI GGTACC 1 cut(s) 159
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
LmnI GCTCC 4 cut(s) 34, 172, 364, 406
Lsp1109I GCAGC 2 cut(s) 55, 355
LweI GCATC 3 cut(s) 255, 315, 512
MabI ACCWGGT 1 cut(s) 310
MaeI CTAG 2 cut(s) 72, 114
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 93
MseI TTAA 1 cut(s) 528
MspI CCGG 2 cut(s) 50, 94
MspR9I CCNGG 2 cut(s) 210, 312
MvaI CCWGG 2 cut(s) 210, 312
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 4 cut(s) 298, 334, 343, 398
NaeI GCCGGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 159
NgoMIV GCCGGC 1 cut(s) 93
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 44, 163, 373
NlaIV GGNNCC 2 cut(s) 157, 393
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 373
PceI AGGCCT 1 cut(s) 484
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 6 cut(s) 70, 225, 345, 375, 459, 513
Psp6I CCWGG 2 cut(s) 208, 310
PspGI CCWGG 2 cut(s) 208, 310
PspN4I GGNNCC 2 cut(s) 157, 393
PspPI GGNCC 2 cut(s) 119, 206
RsaI GTAC 2 cut(s) 46, 157
RsaNI GTAC 2 cut(s) 45, 156
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 6 cut(s) 69, 224, 344, 374, 458, 512
Sau96I GGNCC 2 cut(s) 119, 206
ScrFI CCNGG 2 cut(s) 210, 312
SduI GDGCHC 1 cut(s) 169
SexAI ACCWGGT 1 cut(s) 310
SfaNI GCATC 3 cut(s) 255, 315, 512
SinI GGWCC 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 9 cut(s) 179, 221, 224, 260, 335, 374, 457, 512, 545
SspMI CTAG 2 cut(s) 72, 114
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 208, 310
StyI CCWWGG 2 cut(s) 159, 244
TaaI ACNGT 2 cut(s) 108, 411
TauI GCSGC 4 cut(s) 226, 376, 460, 514
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 2 cut(s) 111, 177
TseI GCWGC 2 cut(s) 68, 343
TspRI CASTG 2 cut(s) 111, 177
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 386
XceI RCATGY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 2 cut(s) 72, 114
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.