FvH4_7g10600

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015246
Physical Location & Seq
Reverse (-)
9935074 .. 9938627
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10600.t1

Sequence Viewer

Length: 1116 bp
ATGACGACTCGAATTGCGCCGGGAGTCGGTGCCAACTTGCTCGGTCAACACTCCGCCGAGCGGAACCAAGACGCCACTGCTTACGTCGGCAATCTCGACCCTCAGGTTAGTGAAGAGTTGCTGTGGGAGCTCTTTGTTCAAGCCGGCCCCGTCGTTAATGTGTATGTTCCCAAGGATAGAGTGACAAACCTACATCAAGGATACGGATTCGTGGAGTTCCGAAGCGAAGAGGATGCCGATTATGCAATCAAGGTGCTTAACATGATCAAGCTATACGGCAAGCCTATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTAGGCGCTAACCTTTTCGTCGGAAATCTTGATCCTGATGTGGATGAGAAACTTCTCTATGATACTTTCAGTGCATTTGGAGTCATAGTTACAAACCCAAAGATAATGAGAGATCCTGACACTGGAAACTCGCGGGGATTTGGCTTCATTAGCTATGATTCCTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGCCAGTATTTATGCAATCGTCAAATAACAGTGTCATATGCATATAAGAAAGACACGAAAGGGGAGCGTCATGGTACTCCTGCAGAGAGAGTTTTGGCTGCTAGCAATCCTACCTCAAAGAGCCGGCCTCACACACTCTTTGCTAGTGGGCCTCCAACACTCCCCAACGGTGCTCAGGCCAATGGTGCCATGGGTGCTCCAGTGCCTCCACGTCCCTTTGCAAATGGTGGTGTTGGTCCAGGTCTGATTCCCCCGCTTCGGCCACAACCCCCTCAAGGTATGGGTTTCCCGCCAATGCAGATGGCTGTACAACCAACTTGGCAAGGTCAGCCTCAACAACAGGGTCAACCAATGATGCCCCCACCGCCAATGCAGCAGTTCAGACCTGCTCCCCCGAACATGCCGCCACCCCCTCCACAGGCCGCTCCAGCTCCTCCACGGTCTCTTCCACCTCCTATGGCGATGGGAAACCAACAACAGATGTGGCATCCACCGCCTCCCCCTCAAATGAGGCCTCCAAACATGCAACACCCATCAATGCCGCCACCTCCTCCACTTAACAACCCACCCCTACCGCCTCCCATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

372

Amino Acids

40.19

Weight (kDa)

7.83

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 97 4.5e-20 RNA recognition motif
RRM_1 PF00076 114 - 185 1.3e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18510
fragaria_vesca FvH4_7g10600
malus_domestica MD07G1111200.v1.1
prunus_persica Prupe.2G134600_v2.0.a1
pyrus_communis pycom07g09600
rosa_chinensis RchiOBHm_Chr1g0348441
rosa_laevigata RLG00000016689 RLG00000028645 RLG00000028653 RLG00000028658
rosa_multiflora Rmu_sc0000091.1_g000014
rosa_roxburghii Rroxscaffold_4G00306980
rosa_rugosa Rorug01G0194600
rosa_samantha Rh1BG179000 Rh1CG197000
rosa_wichuraiana Rw1G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 919
AccB1I GGYRCC 2 cut(s) 29, 710
AccBSI CCGCTC 2 cut(s) 61, 950
AccII CGCG 1 cut(s) 460
AclWI GGATC 2 cut(s) 353, 434
AcoI YGGCCR 2 cut(s) 526, 785
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 601, 834
AfiI CCNNNNNNNGG 6 cut(s) 26, 60, 449, 783, 800, 943
AgsI TTSAA 1 cut(s) 140
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 6 cut(s) 130, 271, 321, 480, 509, 956
AluI AGCT 6 cut(s) 130, 271, 321, 480, 509, 956
Alw21I GWGCWC 3 cut(s) 132, 700, 724
Alw26I GTCTC 1 cut(s) 972
AlwI GGATC 2 cut(s) 353, 434
AoxI GGCC 8 cut(s) 145, 526, 650, 674, 702, 785, 945, 1037
ApeKI GCWGC 3 cut(s) 506, 623, 898
AspLEI GCGC 2 cut(s) 19, 335
AspS9I GGNCC 3 cut(s) 146, 674, 761
AsuC2I CCSGG 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 626
AvaII GGWCC 1 cut(s) 761
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 2 cut(s) 29, 710
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 3 cut(s) 132, 700, 724
BbvI GCAGC 3 cut(s) 518, 610, 910
BccI CCATC 3 cut(s) 820, 982, 1066
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 765
BciVI GTATCC 1 cut(s) 194
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 972
BfaI CTAG 2 cut(s) 627, 669
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 919
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 6 cut(s) 507, 624, 899, 929, 948, 1067
BlsI GCNGC 6 cut(s) 508, 625, 900, 930, 949, 1068
Bme1390I CCNGG 2 cut(s) 21, 765
Bme18I GGWCC 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 146, 674, 761
BmiI GGNNCC 4 cut(s) 31, 65, 148, 712
BmrFI CCNGG 2 cut(s) 21, 765
BmsI GCATC 6 cut(s) 223, 311, 493, 506, 870, 1021
BmtI GCTAGC 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 2 cut(s) 708, 936
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 3 cut(s) 171, 714, 962
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 60, 449, 783, 800, 943
Bse118I RCCGGY 2 cut(s) 143, 648
Bse1I ACTGG 3 cut(s) 454, 529, 725
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 3 cut(s) 171, 714, 962
BseGI GGATG 5 cut(s) 238, 302, 331, 376, 1012
BseLI CCNNNNNNNGG 6 cut(s) 26, 60, 449, 783, 800, 943
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 116, 713
BseNI ACTGG 3 cut(s) 454, 529, 725
BseRI GAGGAG 2 cut(s) 948, 1065
BseXI GCAGC 3 cut(s) 518, 610, 910
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 8 cut(s) 147, 528, 652, 676, 704, 787, 947, 1039
BshNI GGYRCC 2 cut(s) 29, 710
BsiHKAI GWGCWC 3 cut(s) 132, 700, 724
BsiSI CCGG 3 cut(s) 20, 144, 649
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 6 cut(s) 26, 60, 449, 783, 800, 943
BsmAI GTCTC 1 cut(s) 972
BsmFI GGGAC 1 cut(s) 723
BsnI GGCC 8 cut(s) 147, 528, 652, 676, 704, 787, 947, 1039
Bso31I GGTCTC 1 cut(s) 972
Bsp1286I GDGCHC 3 cut(s) 132, 700, 724
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 3 cut(s) 264, 358, 439
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 8 cut(s) 147, 528, 652, 676, 704, 787, 947, 1039
BspCNI CTCAG 2 cut(s) 115, 712
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 31, 65, 148, 712
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 919
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 2 cut(s) 353, 434
BspT107I GGYRCC 2 cut(s) 29, 710
BspTNI GGTCTC 1 cut(s) 972
BsrBI CCGCTC 2 cut(s) 61, 950
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 2 cut(s) 143, 648
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 3 cut(s) 454, 529, 725
BssAI RCCGGY 2 cut(s) 143, 648
BssECI CCNNGG 3 cut(s) 171, 714, 962
BssMI GATC 3 cut(s) 264, 358, 439
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 171, 714
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 3 cut(s) 556, 695, 966
Bst6I CTCTTC 3 cut(s) 108, 222, 975
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 832
BstC8I GCNNGC 4 cut(s) 145, 281, 628, 650
BstDEI CTNAG 2 cut(s) 102, 699
BstDSI CCRYGG 2 cut(s) 714, 962
BstF5I GGATG 5 cut(s) 238, 302, 331, 376, 1012
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 19, 335
BstKTI GATC 3 cut(s) 267, 361, 442
BstMAI GTCTC 1 cut(s) 972
BstMBI GATC 3 cut(s) 264, 358, 439
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 2 cut(s) 928, 1051
BstSCI CCNGG 2 cut(s) 19, 763
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 518, 610, 910
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 8 cut(s) 147, 528, 652, 676, 704, 787, 947, 1039
BtgI CCRYGG 2 cut(s) 714, 962
BtgZI GCGATG 1 cut(s) 1001
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 5 cut(s) 238, 302, 331, 376, 1012
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 5 cut(s) 75, 403, 447, 561, 732
BveI ACCTGC 1 cut(s) 919
Cac8I GCNNGC 4 cut(s) 145, 281, 628, 650
CfoI GCGC 2 cut(s) 19, 335
Cfr10I RCCGGY 2 cut(s) 143, 648
Cfr13I GGNCC 3 cut(s) 146, 674, 761
CseI GACGC 2 cut(s) 80, 581
Csp6I GTAC 2 cut(s) 600, 833
CspCI CAANNNNNGTGG 2 cut(s) 989, 1024
CviAII CATG 6 cut(s) 262, 596, 715, 925, 1048, 1108
CviQI GTAC 2 cut(s) 600, 833
DdeI CTNAG 2 cut(s) 102, 699
DpnI GATC 3 cut(s) 266, 360, 441
DpnII GATC 3 cut(s) 264, 358, 439
EaeI YGGCCR 2 cut(s) 526, 785
Eam1104I CTCTTC 3 cut(s) 108, 222, 975
EarI CTCTTC 3 cut(s) 108, 222, 975
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 171, 714
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 761
Eco53kI GAGCTC 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 171, 714
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 171, 714
FaeI CATG 6 cut(s) 265, 599, 718, 928, 1051, 1111
FaqI GGGAC 1 cut(s) 723
FatI CATG 6 cut(s) 261, 595, 714, 924, 1047, 1107
FauI CCCGC 3 cut(s) 453, 786, 822
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 507, 624, 899, 929, 948, 1067
FokI GGATG 5 cut(s) 245, 289, 338, 383, 999
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 6 cut(s) 507, 624, 899, 929, 948, 1067
FspBI CTAG 2 cut(s) 627, 669
GlaI GCGC 2 cut(s) 18, 334
GluI GCNGC 6 cut(s) 507, 624, 899, 929, 948, 1067
GsuI CTGGAG 2 cut(s) 708, 936
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 8 cut(s) 147, 528, 652, 676, 704, 787, 947, 1039
HapII CCGG 3 cut(s) 20, 144, 649
HgaI GACGC 2 cut(s) 80, 581
HhaI GCGC 2 cut(s) 19, 335
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 265, 599, 718, 928, 1051, 1111
Hin6I GCGC 2 cut(s) 17, 333
HinP1I GCGC 2 cut(s) 17, 333
HincII GTYRAC 2 cut(s) 47, 872
HindII GTYRAC 2 cut(s) 47, 872
HinfI GANTC 6 cut(s) 7, 24, 207, 408, 485, 772
HpaII CCGG 3 cut(s) 20, 144, 649
Hpy166II GTNNAC 2 cut(s) 47, 872
Hpy188I TCNGA 5 cut(s) 221, 350, 502, 771, 908
Hpy188III TCNNGA 4 cut(s) 95, 356, 362, 443
Hpy8I GTNNAC 2 cut(s) 47, 872
Hpy99I CGWCG 3 cut(s) 89, 155, 350
HpyCH4III ACNGT 3 cut(s) 556, 695, 966
HpyCH4IV ACGT 2 cut(s) 84, 736
HpyF3I CTNAG 2 cut(s) 102, 699
HpySE526I ACGT 2 cut(s) 84, 736
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 265, 599, 718, 928, 1051, 1111
HspAI GCGC 2 cut(s) 17, 333
KroI GCCGGC 2 cut(s) 143, 648
KroNI GCCGGC 2 cut(s) 145, 650
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 264, 358, 439
LmnI GCTCC 6 cut(s) 127, 589, 727, 919, 955, 961
Lsp1109I GCAGC 3 cut(s) 518, 610, 910
LweI GCATC 6 cut(s) 223, 311, 493, 506, 870, 1021
MaeI CTAG 2 cut(s) 627, 669
MaeII ACGT 2 cut(s) 84, 736
MaeIII GTNAC 2 cut(s) 181, 415
MalI GATC 3 cut(s) 266, 360, 441
MbiI CCGCTC 2 cut(s) 61, 950
MboI GATC 3 cut(s) 264, 358, 439
MboII GAAGA 3 cut(s) 125, 239, 962
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 132, 700, 724
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 2 cut(s) 33, 417
MmeI TCCRAC 2 cut(s) 328, 704
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 568
MroNI GCCGGC 2 cut(s) 143, 648
MscI TGGCCA 1 cut(s) 528
MseI TTAA 3 cut(s) 156, 258, 1083
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 3 cut(s) 20, 144, 649
MspR9I CCNGG 2 cut(s) 21, 765
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 460
NaeI GCCGGC 2 cut(s) 145, 650
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 714
NdeI CATATG 1 cut(s) 562
NdeII GATC 3 cut(s) 264, 358, 439
NgoMIV GCCGGC 2 cut(s) 143, 648
NheI GCTAGC 1 cut(s) 626
NlaIII CATG 6 cut(s) 265, 599, 718, 928, 1051, 1111
NlaIV GGNNCC 4 cut(s) 31, 65, 148, 712
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 2 cut(s) 928, 1051
PceI AGGCCT 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdiI GCCGGC 2 cut(s) 145, 650
PfeI GAWTC 3 cut(s) 207, 485, 772
PkrI GCNGC 6 cut(s) 508, 625, 900, 930, 949, 1068
PleI GAGTC 2 cut(s) 32, 416
PpsI GAGTC 2 cut(s) 32, 416
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 4 cut(s) 31, 65, 148, 712
PspPI GGNCC 3 cut(s) 146, 674, 761
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 601, 834
RsaNI GTAC 2 cut(s) 600, 833
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 3 cut(s) 156, 258, 1083
SatI GCNGC 6 cut(s) 507, 624, 899, 929, 948, 1067
Sau3AI GATC 3 cut(s) 264, 358, 439
Sau96I GGNCC 3 cut(s) 146, 674, 761
SchI GAGTC 2 cut(s) 33, 417
ScrFI CCNGG 2 cut(s) 21, 765
SduI GDGCHC 3 cut(s) 132, 700, 724
SfaNI GCATC 6 cut(s) 223, 311, 493, 506, 870, 1021
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 1039
SspMI CTAG 2 cut(s) 627, 669
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 2 cut(s) 19, 763
StyI CCWWGG 2 cut(s) 171, 714
TaaI ACNGT 3 cut(s) 556, 695, 966
TaiI ACGT 2 cut(s) 87, 739
TaqI TCGA 2 cut(s) 10, 96
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 832
TauI GCSGC 3 cut(s) 931, 950, 1069
TfiI GAWTC 3 cut(s) 207, 485, 772
Tru1I TTAA 3 cut(s) 156, 258, 1083
Tru9I TTAA 3 cut(s) 156, 258, 1083
TscAI CASTG 5 cut(s) 82, 403, 454, 561, 732
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 506, 623, 898
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 463, 536
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 5 cut(s) 82, 403, 454, 561, 732
VpaK11BI GGWCC 1 cut(s) 761
XceI RCATGY 2 cut(s) 928, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XspI CTAG 2 cut(s) 627, 669
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.