Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Reverse (-)

8086572 .. 8088302

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAACAAGATTTTACCGGAAATGAAATCAACTCAGAATTTGATCTCTTCTTCACCACCACCACCATTGATACCTCTCAAATCAAACACAAGCTTGTCAAATTTAAACAGCAAAATCACTCCAAATATTCTTCTAATAATCATAATCCTCTCGATCATCTTCTTCATCTCTGGTCTTCTCCATATTCTTGTCAAATTCCTCCTCACACCATCAAGAGAAAGCAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAACAACTCTTTAACCTCCATGATTCTGGCGTTGACCAATCCTTAATCGACACGTTACCTGTTTTTCATTACAAGTCCATTGTCGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCTGTGAGTTTGAAACAGAGGATAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACGTTGAGTGTATCGACACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAATCTCCTCTCTGGTTTTTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGAGTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAACTCTCAACTAGGTTATGATGTGAACAATGATTCTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGACCCGGATGGTGACATGGATGGTTTAGATGAAAAGGTTGTTCCTTTAGAAGTTAAGTTAGGGAAGTTTAGGAACATAGATCATGTTGGTGAAGGAAGTGACCAGAAGAAAAATAGCATAAGTGGTAATAGTAAAAATGTGGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTATATTATGGATCAAGAAGCTACACTTAAGGTTCATGTTTCGACCAAGAAACTATCCGGAAAAGACCGGGTGCCGAGCCACAGGACCGTTATGTCCGAATGCGGTTTTGATCCAACAGTTAAGGGAATTGAGAAGAGTGTTGTGGAGAGGGAGAGCTTTTCTTTATCGAAAATTTGGCTAAGGGGTAAAAAGGAGAAGCAAAAGGGGACTAGTGCTAGAGATTCGGATTGTTCTTTCGTGTCTTCCTCTTCACTCCGGTTTCCAAACCATCGGATTCCTCCCGAAGAGAGTCTTAAGAGCGAAAATTCGGAATCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGACCATGCATTGGCTTGCAGGGAGACAAAACAAGATTGTTCAGCCTTCTACATCCAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

423

Amino Acids

47.29

Weight (kDa)

7.59

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	123 - 170	7.3e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	125 - 168	1.7e-14	Ring finger domain
zf-RING_11	PF17123	125 - 154	2.2e-09	RING-like zinc finger
zf-rbx1	PF12678	125 - 168	6.5e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	1218
AccI	GTMKAC	1 cut(s)	653
AccIII	TCCGGA	1 cut(s)	917
AciI	CCGC	1 cut(s)	963
AclWI	GGATC	3 cut(s)	859, 879, 965
AcsI	RAATTY	5 cut(s)	37, 100, 194, 1032, 1165
AcvI	CACGTG	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	663, 1218
AflII	CTTAAG	2 cut(s)	887, 1154
AflIII	ACRYGT	2 cut(s)	318, 465
AgsI	TTSAA	3 cut(s)	257, 269, 401
AhlI	ACTAGT	1 cut(s)	1070
AluBI	AGCT	7 cut(s)	93, 251, 265, 546, 582, 881, 1017
AluI	AGCT	7 cut(s)	93, 251, 265, 546, 582, 881, 1017
Alw26I	GTCTC	5 cut(s)	359, 392, 534, 1175, 1225
AlwI	GGATC	3 cut(s)	859, 879, 965
Ama87I	CYCGRG	1 cut(s)	583
Aor13HI	TCCGGA	1 cut(s)	917
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	5 cut(s)	37, 100, 194, 1032, 1165
AspS9I	GGNCC	2 cut(s)	945, 1209
AsuC2I	CCSGG	3 cut(s)	658, 689, 929
AsuHPI	GGTGA	4 cut(s)	45, 524, 707, 785
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	2 cut(s)	945, 1209
BanI	GGYRCC	1 cut(s)	931
BbrPI	CACGTG	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	167, 1095
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	6 cut(s)	217, 686, 698, 821, 1137, 1201
BcnI	CCSGG	3 cut(s)	658, 689, 929
BcoDI	GTCTC	5 cut(s)	359, 392, 534, 1175, 1225
BcuI	ACTAGT	1 cut(s)	1070
BfaI	CTAG	5 cut(s)	623, 1071, 1077, 1203, 1270
BfrI	CTTAAG	2 cut(s)	887, 1154
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	3 cut(s)	658, 689, 929
Bme18I	GGWCC	2 cut(s)	945, 1209
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	945, 1209
BmiI	GGNNCC	2 cut(s)	597, 933
BmrFI	CCNGG	3 cut(s)	658, 689, 929
BpiI	GAAGAC	2 cut(s)	167, 1095
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
Bpu10I	CCTNAGC	1 cut(s)	1040
BpuEI	CTTGAG	2 cut(s)	587, 626
BpuMI	CCSGG	3 cut(s)	658, 689, 929
BsaAI	YACGTR	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	359
BsaWI	WCCGGW	3 cut(s)	16, 917, 1116
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 1218
BseAI	TCCGGA	1 cut(s)	917
BseGI	GGATG	4 cut(s)	697, 709, 832, 1259
BseLI	CCNNNNNNNGG	2 cut(s)	663, 1218
BseMII	CTCAG	2 cut(s)	47, 639
BseRI	GAGGAG	3 cut(s)	191, 503, 538
BseXI	GCAGC	1 cut(s)	447
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	931
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	6 cut(s)	17, 658, 689, 918, 928, 1117
BslFI	GGGAC	2 cut(s)	477, 1081
BslI	CCNNNNNNNGG	2 cut(s)	663, 1218
BsmAI	GTCTC	5 cut(s)	359, 392, 534, 1175, 1225
BsmBI	CGTCTC	2 cut(s)	534, 1175
BsmFI	GGGAC	2 cut(s)	477, 1081
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	583
Bsp13I	TCCGGA	1 cut(s)	917
Bsp143I	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
BspACI	CCGC	1 cut(s)	963
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	46, 640
BspEI	TCCGGA	1 cut(s)	917
BspLI	GGNNCC	2 cut(s)	597, 933
BspPI	GGATC	3 cut(s)	859, 879, 965
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	931
BspTI	CTTAAG	2 cut(s)	887, 1154
BspTNI	GGTCTC	1 cut(s)	359
BssMI	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
Bst4CI	ACNGT	2 cut(s)	949, 979
Bst6I	CTCTTC	5 cut(s)	52, 258, 989, 1114, 1140
BstAFI	CTTAAG	2 cut(s)	887, 1154
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	263, 1224
BstDEI	CTNAG	5 cut(s)	33, 416, 542, 648, 1040
BstF5I	GGATG	4 cut(s)	697, 709, 832, 1259
BstKTI	GATC	7 cut(s)	45, 156, 506, 766, 854, 874, 973
BstMAI	GTCTC	5 cut(s)	359, 392, 534, 1175, 1225
BstMBI	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
BstSCI	CCNGG	3 cut(s)	656, 687, 927
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	2 cut(s)	167, 1095
BstX2I	RGATCY	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	697, 709, 832, 1259
Cac8I	GCNNGC	2 cut(s)	263, 1224
Cfr13I	GGNCC	2 cut(s)	945, 1209
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	7 cut(s)	287, 440, 681, 700, 767, 896, 1213
DdeI	CTNAG	5 cut(s)	33, 416, 542, 648, 1040
DpnI	GATC	7 cut(s)	44, 155, 505, 765, 853, 873, 972
DpnII	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
DraI	TTTAAA	1 cut(s)	105
DrdI	GACNNNNNNGTC	1 cut(s)	952
DseDI	GACNNNNNNGTC	1 cut(s)	952
Eam1104I	CTCTTC	5 cut(s)	52, 258, 989, 1114, 1140
EarI	CTCTTC	5 cut(s)	52, 258, 989, 1114, 1140
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	945, 1209
Eco72I	CACGTG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	1218
Esp3I	CGTCTC	2 cut(s)	534, 1175
FaeI	CATG	7 cut(s)	290, 443, 684, 703, 770, 899, 1216
FalI	AAGNNNNNCTT	6 cut(s)	249, 281, 870, 902, 1137, 1169
FaqI	GGGAC	2 cut(s)	477, 1081
FatI	CATG	7 cut(s)	286, 439, 680, 699, 766, 895, 1212
FauNDI	CATATG	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	4 cut(s)	704, 716, 839, 1246
Fsp4HI	GCNGC	1 cut(s)	436
FspBI	CTAG	5 cut(s)	623, 1071, 1077, 1203, 1270
GluI	GCNGC	1 cut(s)	436
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	6 cut(s)	17, 658, 689, 918, 928, 1117
Hin1II	CATG	7 cut(s)	290, 443, 684, 703, 770, 899, 1216
HincII	GTYRAC	2 cut(s)	301, 654
HindII	GTYRAC	2 cut(s)	301, 654
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	9 cut(s)	290, 420, 608, 644, 650, 1082, 1135, 1150, 1172
HpaII	CCGG	6 cut(s)	17, 658, 689, 918, 928, 1117
HphI	GGTGA	4 cut(s)	45, 524, 707, 785
Hpy166II	GTNNAC	4 cut(s)	301, 575, 637, 654
Hpy188I	TCNGA	6 cut(s)	36, 649, 958, 1087, 1134, 1171
Hpy188III	TCNNGA	8 cut(s)	151, 213, 566, 585, 605, 875, 918, 1142
Hpy8I	GTNNAC	4 cut(s)	301, 575, 637, 654
HpyAV	CCTTC	3 cut(s)	770, 825, 1263
HpyCH4III	ACNGT	2 cut(s)	949, 979
HpyCH4IV	ACGT	3 cut(s)	320, 450, 467
HpyCH4V	TGCA	3 cut(s)	435, 1216, 1226
HpyF3I	CTNAG	5 cut(s)	33, 416, 542, 648, 1040
HpySE526I	ACGT	3 cut(s)	320, 450, 467
Hsp92II	CATG	7 cut(s)	290, 443, 684, 703, 770, 899, 1216
Kpn2I	TCCGGA	1 cut(s)	917
Kzo9I	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	447
MaeI	CTAG	5 cut(s)	623, 1071, 1077, 1203, 1270
MaeII	ACGT	3 cut(s)	320, 450, 467
MaeIII	GTNAC	5 cut(s)	244, 321, 683, 695, 782
MalI	GATC	7 cut(s)	44, 155, 505, 765, 853, 873, 972
MboI	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	6 cut(s)	37, 100, 194, 987, 1032, 1165
MlyI	GAGTC	4 cut(s)	414, 617, 659, 1159
MmeI	TCCRAC	1 cut(s)	998
Mph1103I	ATGCAT	1 cut(s)	1218
MroI	TCCGGA	1 cut(s)	917
MseI	TTAA	7 cut(s)	104, 279, 311, 738, 888, 981, 1155
MslI	CAYNNNNRTG	1 cut(s)	771
MspCI	CTTAAG	2 cut(s)	887, 1154
MspI	CCGG	6 cut(s)	17, 658, 689, 918, 928, 1117
MspR9I	CCNGG	3 cut(s)	658, 689, 929
Mva1269I	GAATGC	1 cut(s)	965
NciI	CCSGG	3 cut(s)	658, 689, 929
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
NlaIII	CATG	7 cut(s)	290, 443, 684, 703, 770, 899, 1216
NlaIV	GGNNCC	2 cut(s)	597, 933
NmeAIII	GCCGAG	1 cut(s)	960
NmuCI	GTSAC	3 cut(s)	683, 695, 782
NsiI	ATGCAT	1 cut(s)	1218
PaeR7I	CTCGAG	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	5 cut(s)	290, 644, 1082, 1135, 1172
PflMI	CCANNNNNTGG	1 cut(s)	1218
PkrI	GCNGC	1 cut(s)	437
PleI	GAGTC	4 cut(s)	414, 616, 658, 1158
PmaCI	CACGTG	1 cut(s)	468
PmlI	CACGTG	1 cut(s)	468
PpsI	GAGTC	4 cut(s)	414, 616, 658, 1158
Ppu21I	YACGTR	1 cut(s)	468
PspCI	CACGTG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	597, 933
PspPI	GGNCC	2 cut(s)	945, 1209
PsuI	RGATCY	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	771
SalI	GTCGAC	1 cut(s)	652
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	7 cut(s)	104, 279, 311, 738, 888, 981, 1155
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	7 cut(s)	42, 153, 503, 763, 851, 871, 970
Sau96I	GGNCC	2 cut(s)	945, 1209
SchI	GAGTC	4 cut(s)	414, 617, 659, 1159
ScrFI	CCNGG	3 cut(s)	658, 689, 929
Sfr274I	CTCGAG	1 cut(s)	583
SinI	GGWCC	2 cut(s)	945, 1209
SlaI	CTCGAG	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	5 cut(s)	566, 583, 605, 887, 1154
SmoI	CTYRAG	5 cut(s)	566, 583, 605, 887, 1154
SpeI	ACTAGT	1 cut(s)	1070
Sse9I	AATT	6 cut(s)	37, 100, 194, 987, 1032, 1165
SsiI	CCGC	1 cut(s)	963
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	5 cut(s)	623, 1071, 1077, 1203, 1270
StyD4I	CCNGG	3 cut(s)	656, 687, 927
TaaI	ACNGT	2 cut(s)	949, 979
TaiI	ACGT	3 cut(s)	323, 453, 470
TaqI	TCGA	8 cut(s)	152, 237, 315, 462, 584, 653, 902, 1028
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	6 cut(s)	37, 100, 194, 987, 1032, 1165
TfiI	GAWTC	5 cut(s)	290, 644, 1082, 1135, 1172
Tru1I	TTAA	7 cut(s)	104, 279, 311, 738, 888, 981, 1155
Tru9I	TTAA	7 cut(s)	104, 279, 311, 738, 888, 981, 1155
TseFI	GTSAC	3 cut(s)	683, 695, 782
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	3 cut(s)	683, 695, 782
TspDTI	ATGAA	6 cut(s)	17, 38, 154, 323, 729, 884
Van91I	CCANNNNNTGG	1 cut(s)	1218
Vha464I	CTTAAG	2 cut(s)	887, 1154
VpaK11BI	GGWCC	2 cut(s)	945, 1209
XapI	RAATTY	5 cut(s)	37, 100, 194, 1032, 1165
XhoI	CTCGAG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	5 cut(s)	623, 1071, 1077, 1203, 1270
Zsp2I	ATGCAT	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.