Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Forward (+)

14866763 .. 14868704

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTCCCAGAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTTCCACAAGAACCACCGTTATCTCTCCGCTCCAGCGCAAACTTCGATCTAAACAGCAAAATCAGTCCAAGTATTCTCCTCATAATCATAATCCTCTCAATCATCTTCTTCATCTCCGGTCTCCTTCATCTCTTAGTCAGATTCCTCCTCACACCATCGAGCAGAGACAGAGAAGATTACTTCGACAACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTTGACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAATCCATAATCGGTCTCAAGAACTATCCTTTTGATTGTGCAGTTTGTCTTTGTGAGTTCGAAACAGAGGATAAGCTCAGGCTCTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTTCTATCTCACTCTACTTGTCCTTTGTGTAGATCCAGTCTCCTCTCTGATCTCTCTTCGCACCAAGATCCTCGTTCTTCTTTCCTCCTTGTGCTCGAGTCTGCGAGTGATCATAGCTCGAGAGAGATTGGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCAAATGATGATATTGATGTGTCTAGTGCTCATCTTGGTTTGGTCGGAAACAATGATCTTGGATCAACCAGGATAGATTCGGGTCACGGAGATCAGTACCTGGATGGTGAATTGGGTGGTTCGGTTGGAAAGGTTGTTCCTTTTTCAGTTAAGCTAGGGAAGTTTAGGAATATAGATATTGGTGAAGGAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAGAGGAGGTGTTTCTCAATGGGATCATATGAGTATATAATGGATGAAGAAACGACTCTTAAGGTTCATGTTTCAACCAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACAGCGATGTCCGAATGCGGGTTTGATCCAACAGGGAGATTGAAATTCAGTGGGAGTGGATCGATGAGGATAGTGGAAGAAGCGGCCGAGAAGAATGTAGTGGAAAGAGAGAGCTTTTCGGTATCGAAAATATGGCTAAGGGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTTCTTCGTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGGAACCATCCCGATGCGATGATCGAAAGTGGTTGCGAAGAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTTGGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

472

Amino Acids

52.34

Weight (kDa)

6.16

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	126 - 179	5.7e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	133 - 176	3.2e-14	Ring finger domain
zf-RING_11	PF17123	133 - 162	6.5e-10	RING-like zinc finger
zf-rbx1	PF12678	134 - 176	1.7e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	4 cut(s)	106, 1026, 1091, 1249
AclWI	GGATC	6 cut(s)	522, 557, 727, 919, 1028, 1075
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	3 cut(s)	5, 58, 1052
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	1005, 1026
AflII	CTTAAG	1 cut(s)	947
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	6 cut(s)	281, 293, 963, 1051, 1178, 1407
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	725, 756
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	7 cut(s)	289, 298, 439, 612, 647, 811, 1122
AluI	AGCT	7 cut(s)	289, 298, 439, 612, 647, 811, 1122
Alw21I	GWGCWC	2 cut(s)	591, 688
Alw26I	GTCTC	7 cut(s)	203, 237, 383, 539, 630, 1319, 1369
AlwI	GGATC	6 cut(s)	522, 557, 727, 919, 1028, 1075
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	3 cut(s)	12, 590, 613
AoxI	GGCC	2 cut(s)	283, 1092
ApeKI	GCWGC	3 cut(s)	459, 644, 656
ApoI	RAATTY	3 cut(s)	5, 58, 1052
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	999
AsuHPI	GGTGA	2 cut(s)	776, 851
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	3 cut(s)	12, 590, 613
BbsI	GAAGAC	1 cut(s)	1203
Bbv12I	GWGCWC	2 cut(s)	591, 688
BbvI	GCAGC	3 cut(s)	471, 643, 656
BccI	CCATC	4 cut(s)	241, 755, 1263, 1345
BciT130I	CCWGG	2 cut(s)	727, 758
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	999
BcoDI	GTCTC	7 cut(s)	203, 237, 383, 539, 630, 1319, 1369
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	5 cut(s)	681, 812, 849, 1347, 1417
BfrI	CTTAAG	1 cut(s)	947
BisI	GCNGC	4 cut(s)	460, 645, 657, 1092
BlsI	GCNGC	4 cut(s)	461, 646, 658, 1093
Bme1390I	CCNGG	3 cut(s)	727, 758, 999
BmeT110I	CYCGRG	3 cut(s)	12, 590, 613
BmiI	GGNNCC	1 cut(s)	1253
BmrFI	CCNGG	3 cut(s)	727, 758, 999
BmsI	GCATC	1 cut(s)	1252
BpiI	GAAGAC	1 cut(s)	1203
BpmI	CTGGAG	2 cut(s)	94, 339
Bpu10I	CCTNAGC	2 cut(s)	440, 1145
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	999
Bsa29I	ATCGAT	2 cut(s)	486, 1070
BsaI	GGTCTC	2 cut(s)	203, 383
BsaJI	CCNNGG	1 cut(s)	988
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	1005, 1026
Bse1I	ACTGG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	727, 758
BseCI	ATCGAT	2 cut(s)	486, 1070
BseDI	CCNNGG	1 cut(s)	988
BseGI	GGATG	3 cut(s)	766, 937, 1255
BseLI	CCNNNNNNNGG	2 cut(s)	1005, 1026
BseMII	CTCAG	2 cut(s)	68, 454
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	5 cut(s)	146, 215, 527, 642, 907
BseX3I	CGGCCG	1 cut(s)	1092
BseXI	GCAGC	3 cut(s)	471, 643, 656
BsgI	GTGCAG	2 cut(s)	423, 663
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	2 cut(s)	285, 1094
BshVI	ATCGAT	2 cut(s)	486, 1070
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	2 cut(s)	591, 688
BsiHKCI	CYCGRG	3 cut(s)	12, 590, 613
BsiSI	CCGG	2 cut(s)	195, 999
BslI	CCNNNNNNNGG	2 cut(s)	1005, 1026
BsmAI	GTCTC	7 cut(s)	203, 237, 383, 539, 630, 1319, 1369
BsmI	GAATGC	2 cut(s)	1028, 1223
BsnI	GGCC	2 cut(s)	285, 1094
Bso31I	GGTCTC	2 cut(s)	203, 383
BsoBI	CYCGRG	3 cut(s)	12, 590, 613
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	591, 688
BspACI	CCGC	4 cut(s)	106, 1026, 1091, 1249
BspANI	GGCC	2 cut(s)	285, 1094
BspCNI	CTCAG	2 cut(s)	67, 453
BspDI	ATCGAT	2 cut(s)	486, 1070
BspLI	GGNNCC	1 cut(s)	1253
BspPI	GGATC	6 cut(s)	522, 557, 727, 919, 1028, 1075
BspQI	GCTCTTC	2 cut(s)	282, 1213
BspT104I	TTCGAA	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	947
BspTNI	GGTCTC	2 cut(s)	203, 383
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	988
Bst2UI	CCWGG	2 cut(s)	727, 758
Bst4CI	ACNGT	3 cut(s)	96, 641, 989
Bst6I	CTCTTC	3 cut(s)	282, 556, 1213
BstAFI	CTTAAG	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	3 cut(s)	287, 995, 1368
BstDEI	CTNAG	4 cut(s)	54, 211, 440, 1145
BstDSI	CCRYGG	1 cut(s)	988
BstF5I	GGATG	3 cut(s)	766, 937, 1255
BstHHI	GCGC	1 cut(s)	116
BstMAI	GTCTC	7 cut(s)	203, 237, 383, 539, 630, 1319, 1369
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 653
BstNI	CCWGG	2 cut(s)	727, 758
BstSCI	CCNGG	3 cut(s)	725, 756, 997
BstV1I	GCAGC	3 cut(s)	471, 643, 656
BstV2I	GAAGAC	1 cut(s)	1203
BstX2I	RGATCY	2 cut(s)	527, 562
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	2 cut(s)	527, 562
BstZI	CGGCCG	1 cut(s)	1092
Bsu15I	ATCGAT	2 cut(s)	486, 1070
BsuRI	GGCC	2 cut(s)	285, 1094
BsuTUI	ATCGAT	2 cut(s)	486, 1070
BtgI	CCRYGG	1 cut(s)	988
BtgZI	GCGATG	2 cut(s)	1028, 1280
BtsCI	GGATG	3 cut(s)	766, 937, 1255
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	270, 646, 1063
Cac8I	GCNNGC	3 cut(s)	287, 995, 1368
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	1 cut(s)	116
ClaI	ATCGAT	2 cut(s)	486, 1070
Csp6I	GTAC	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CviAII	CATG	3 cut(s)	311, 475, 956
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	4 cut(s)	54, 211, 440, 1145
DrdI	GACNNNNNNGTC	1 cut(s)	1015
DseDI	GACNNNNNNGTC	1 cut(s)	1015
EaeI	YGGCCR	1 cut(s)	1092
EagI	CGGCCG	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	282, 556, 1213
EarI	CTCTTC	3 cut(s)	282, 556, 1213
EclXI	CGGCCG	1 cut(s)	1092
Eco31I	GGTCTC	2 cut(s)	203, 383
Eco52I	CGGCCG	1 cut(s)	1092
Eco88I	CYCGRG	3 cut(s)	12, 590, 613
EcoRII	CCWGG	2 cut(s)	725, 756
FaeI	CATG	3 cut(s)	314, 478, 959
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	3 cut(s)	310, 474, 955
FauI	CCCGC	1 cut(s)	1019
FauNDI	CATATG	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	460, 645, 657, 1092
FokI	GGATG	3 cut(s)	773, 944, 1242
Fsp4HI	GCNGC	4 cut(s)	460, 645, 657, 1092
FspBI	CTAG	5 cut(s)	681, 812, 849, 1347, 1417
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	460, 645, 657, 1092
GsuI	CTGGAG	2 cut(s)	94, 339
HaeIII	GGCC	2 cut(s)	285, 1094
HapII	CCGG	2 cut(s)	195, 999
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	314, 478, 959
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	6 cut(s)	219, 314, 593, 734, 943, 1316
HpaII	CCGG	2 cut(s)	195, 999
HphI	GGTGA	2 cut(s)	776, 851
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	6 cut(s)	57, 218, 544, 704, 1021, 1315
Hpy188III	TCNNGA	6 cut(s)	14, 318, 382, 615, 1215, 1259
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	5 cut(s)	81, 212, 343, 836, 1150
HpyCH4III	ACNGT	3 cut(s)	96, 641, 989
HpyCH4IV	ACGT	2 cut(s)	267, 344
HpyCH4V	TGCA	5 cut(s)	404, 459, 644, 659, 1370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 653
HpyF3I	CTNAG	4 cut(s)	54, 211, 440, 1145
HpySE526I	ACGT	2 cut(s)	267, 344
Hsp92II	CATG	3 cut(s)	314, 478, 959
HspAI	GCGC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	604
LguI	GCTCTTC	2 cut(s)	282, 1213
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	3 cut(s)	471, 643, 656
LweI	GCATC	1 cut(s)	1252
MaeI	CTAG	5 cut(s)	681, 812, 849, 1347, 1417
MaeII	ACGT	2 cut(s)	267, 344
MaeIII	GTNAC	3 cut(s)	268, 345, 740
MbiI	CCGCTC	1 cut(s)	108
MflI	RGATCY	2 cut(s)	527, 562
MhlI	GDGCHC	2 cut(s)	591, 688
MluCI	AATT	4 cut(s)	5, 58, 767, 1052
MlyI	GAGTC	3 cut(s)	602, 937, 1325
MmeI	TCCRAC	3 cut(s)	682, 763, 1061
MseI	TTAA	2 cut(s)	807, 948
MslI	CAYNNNNRTG	2 cut(s)	309, 1260
MspA1I	CMGCKG	1 cut(s)	1249
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	2 cut(s)	195, 999
MspR9I	CCNGG	3 cut(s)	727, 758, 999
Mva1269I	GAATGC	2 cut(s)	1028, 1223
MvaI	CCWGG	2 cut(s)	727, 758
MwoI	GCNNNNNNNGC	2 cut(s)	295, 653
NciI	CCSGG	1 cut(s)	999
NdeI	CATATG	1 cut(s)	916
NlaIII	CATG	3 cut(s)	314, 478, 959
NlaIV	GGNNCC	1 cut(s)	1253
NmeAIII	GCCGAG	1 cut(s)	1120
NmuCI	GTSAC	2 cut(s)	268, 740
NspV	TTCGAA	1 cut(s)	423
PaeR7I	CTCGAG	2 cut(s)	590, 613
PciSI	GCTCTTC	2 cut(s)	282, 1213
PctI	GAATGC	2 cut(s)	1028, 1223
PfeI	GAWTC	3 cut(s)	219, 314, 734
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	461, 646, 658, 1093
PleI	GAGTC	3 cut(s)	601, 937, 1324
PpsI	GAGTC	3 cut(s)	601, 937, 1324
Psp6I	CCWGG	2 cut(s)	725, 756
PspGI	CCWGG	2 cut(s)	725, 756
PspN4I	GGNNCC	1 cut(s)	1253
PspXI	VCTCGAGB	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	527, 562
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	2 cut(s)	309, 1260
SapI	GCTCTTC	2 cut(s)	282, 1213
SaqAI	TTAA	2 cut(s)	807, 948
SatI	GCNGC	4 cut(s)	460, 645, 657, 1092
SchI	GAGTC	3 cut(s)	602, 937, 1325
ScrFI	CCNGG	3 cut(s)	727, 758, 999
SduI	GDGCHC	2 cut(s)	591, 688
SfaNI	GCATC	1 cut(s)	1252
Sfr274I	CTCGAG	2 cut(s)	590, 613
SfuI	TTCGAA	1 cut(s)	423
SlaI	CTCGAG	2 cut(s)	590, 613
SmiMI	CAYNNNNRTG	2 cut(s)	309, 1260
SmlI	CTYRAG	4 cut(s)	380, 590, 613, 947
SmoI	CTYRAG	4 cut(s)	380, 590, 613, 947
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	4 cut(s)	5, 58, 767, 1052
SsiI	CCGC	4 cut(s)	106, 1026, 1091, 1249
SspMI	CTAG	5 cut(s)	681, 812, 849, 1347, 1417
StyD4I	CCNGG	3 cut(s)	725, 756, 997
TaaI	ACNGT	3 cut(s)	96, 641, 989
TaiI	ACGT	2 cut(s)	270, 347
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	4 cut(s)	5, 58, 767, 1052
TauI	GCSGC	1 cut(s)	1094
TfiI	GAWTC	3 cut(s)	219, 314, 734
Tru1I	TTAA	2 cut(s)	807, 948
Tru9I	TTAA	2 cut(s)	807, 948
TscAI	CASTG	3 cut(s)	277, 646, 1063
TseFI	GTSAC	2 cut(s)	268, 740
TseI	GCWGC	3 cut(s)	459, 644, 656
Tsp45I	GTSAC	2 cut(s)	268, 740
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	3 cut(s)	277, 646, 1063
Tth111I	GACNNNGTC	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	947
XapI	RAATTY	3 cut(s)	5, 58, 1052
XhoI	CTCGAG	2 cut(s)	590, 613
XspI	CTAG	5 cut(s)	681, 812, 849, 1347, 1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.