Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Reverse (-)

27229461 .. 27231204

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGTGGGGGCTCTGCTTGAAATCAAAGAAGCAGGCTTTTCTGCTCCACCACCTCCAATTTCCAATCTTGAATCAGATAGTTTCAGTTTTGGGAGCCAGGTCAGTCCAAGCATATTGCTCATAATCATAATCCTAGCCATTATTTTCTTTGTTTCTGGTTTCCTTCACCTGCTTGTTAGATTCCTTTTAAGACCTCCAAGCACAGACACAGATGACTTGGAAAGTGTGACTGTTCTTCAAGGCCAGTTACAGCAACTGTTCCATCTCCATGATGCTGGAGTTGATCAGTCCTTCATAGACACCCTTCCTGTCTTTAATTACAAAGCCATTATTGGATTGAAAAATCCATTTGATTGTGCTGTTTGTCTATGTGAGTTTGAGCCTGAAGACAAGCTTAGATTGTTGCCAAAATGTAGCCATGCATTTCATATGGAGTGTATAGACACTTGGCTCTTGTCTCACTCCACCTGCCCTTTGTGTAGATCCAGTTTGCTTCCTGAAAACTCTCAAAGTAATACTTGTTCTCCCATTGTTCTTGTTCTTGAATCGGGAAGTGTCGAAAACTCGAGAGAAATCAATGTTTCTGGTAGAGACCATCTGGCTGCTGTTGGCAGAACCGGTTCTGTTTTGGGTCCCAATTCCCATCTGGGTTTGCACGGGGACATGGAATTGGGCTTGTCTCAACATAAATCTTGCGAAATTGTGACGAAAGACGAAGGGAATCCGAATCCGGCAGTTGCAGTGGATCAAGAGGAAAAGGTAGTGCAAGTGAAGCTTGGCAAGTTTAGGAATGTAGATGGTGGTGAAGAGAGTAGTAATAGAAATGTGGATGCAAGAAGGTGTTTTTCAATGGGGTCTTTTGCTTATGTAATGGATGAGAGTTCTTCATTGCAAGTACCCATTAGAAGCTCGACGAAAAAGCAATCTCGCAAGAAGCCAAGTTTGCCTTTAGAACCAGGCCATAGGCAAGCAATGTCTGAATGCGATTGCGAGTCCAGAAGAGAGTTCAAGTTCAATGGGGCCGAAGCAATTGGAAGCCTTGAAACTCAAGGGACTAATAGTGCTAGCATTACTAGTGGCAATGGCATTGGGAGGAGCAAGAGGGAGAGCTACTCTATATCAAAGATTTGGCTCAGGGGGAAGAAAGAAAAGCCGAATGTGGTTGGCGCTGATCTGTCTAGGCGGGCCTTTTCTTTCCGGTTTCCAGGGCACAGGGCAGGCGCAGATGAAAGCAAGGCCAAGAACGGTGGTGGGAGTAGGAGGACTATTTCCGAGATTGACATTGGAAGGTGGGAAAATGGAGGGAATGAGGTGAATTTCAGTGGCAACAGTTTGGATTCTCAATCAAATCCACCATCTTTTGCAAGAAGGACTCTGCTTTGGCTTATGGGAAGACAGAACAAAGTTGTTCATTCATCTTTAGATCCCACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

478

Amino Acids

52.23

Weight (kDa)

6.51

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	114 - 161	8.2e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	116 - 163	3e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	118 - 161	4.1e-14	Ring finger domain
zf-RING_11	PF17123	118 - 147	2.9e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	177, 476
Acc36I	ACCTGC	2 cut(s)	177, 476
AciI	CCGC	1 cut(s)	1183
AclWI	GGATC	3 cut(s)	477, 753, 1418
AcsI	RAATTY	1 cut(s)	1315
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	897
AgeI	ACCGGT	1 cut(s)	617
AgsI	TTSAA	9 cut(s)	20, 71, 239, 340, 545, 849, 1009, 1015, 1043
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	3 cut(s)	96, 955, 1204
AluBI	AGCT	4 cut(s)	394, 775, 909, 1110
AluI	AGCT	4 cut(s)	394, 775, 909, 1110
Alw26I	GTCTC	3 cut(s)	462, 585, 684
AlwI	GGATC	3 cut(s)	477, 753, 1418
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	5 cut(s)	241, 958, 1020, 1185, 1236
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	1315
AsiGI	ACCGGT	1 cut(s)	617
Asp700I	GAANNNNTTC	1 cut(s)	619
AspLEI	GCGC	2 cut(s)	1169, 1223
AspS9I	GGNCC	3 cut(s)	632, 1020, 1185
AsuHPI	GGTGA	3 cut(s)	158, 815, 1324
AsuNHI	GCTAGC	1 cut(s)	1064
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	1212
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	393, 1399
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	5 cut(s)	270, 603, 651, 791, 1363
BciT130I	CCWGG	3 cut(s)	98, 957, 1206
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	462, 585, 684
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	4 cut(s)	134, 1065, 1074, 1179
BfoI	RGCGCY	1 cut(s)	1170
BfuAI	ACCTGC	2 cut(s)	177, 476
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	3 cut(s)	98, 957, 1206
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	3 cut(s)	632, 1020, 1185
BmiI	GGNNCC	4 cut(s)	95, 633, 634, 1021
BmrFI	CCNGG	3 cut(s)	98, 957, 1206
BmsI	GCATC	2 cut(s)	262, 820
BmtI	GCTAGC	1 cut(s)	1068
BpiI	GAAGAC	2 cut(s)	393, 1399
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	1133
BpuEI	CTTGAG	1 cut(s)	1032
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	1205
BsaWI	WCCGGW	2 cut(s)	617, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	2 cut(s)	244, 486
Bse3DI	GCAATG	3 cut(s)	887, 978, 1087
BseBI	CCWGG	3 cut(s)	98, 957, 1206
BseDI	CCNNGG	1 cut(s)	1205
BseGI	GGATG	2 cut(s)	835, 880
BseMI	GCAATG	3 cut(s)	887, 978, 1087
BseMII	CTCAG	1 cut(s)	1147
BseNI	ACTGG	2 cut(s)	244, 486
BseRI	GAGGAG	1 cut(s)	1108
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	5 cut(s)	243, 960, 1022, 1187, 1238
BshTI	ACCGGT	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	618, 731, 1198
BslFI	GGGAC	3 cut(s)	618, 674, 1066
BsmAI	GTCTC	3 cut(s)	462, 585, 684
BsmFI	GGGAC	3 cut(s)	618, 674, 1066
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	5 cut(s)	243, 960, 1022, 1187, 1238
Bso31I	GGTCTC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	13, 1212
Bsp143I	GATC	5 cut(s)	283, 482, 745, 1171, 1423
BspACI	CCGC	1 cut(s)	1183
BspANI	GGCC	5 cut(s)	243, 960, 1022, 1187, 1238
BspCNI	CTCAG	1 cut(s)	1146
BspLI	GGNNCC	4 cut(s)	95, 633, 634, 1021
BspMI	ACCTGC	2 cut(s)	177, 476
BspOI	GCTAGC	1 cut(s)	1068
BspPI	GGATC	3 cut(s)	477, 753, 1418
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	3 cut(s)	887, 978, 1087
BsrFI	RCCGGY	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	244, 486
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	1205
BssMI	GATC	5 cut(s)	283, 482, 745, 1171, 1423
Bst2UI	CCWGG	3 cut(s)	98, 957, 1206
Bst4CI	ACNGT	5 cut(s)	232, 258, 1247, 1331, 1432
Bst6I	CTCTTC	2 cut(s)	801, 994
BstC8I	GCNNGC	5 cut(s)	34, 969, 1066, 1185, 1219
BstDEI	CTNAG	2 cut(s)	395, 1133
BstF5I	GGATG	2 cut(s)	835, 880
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	2 cut(s)	1169, 1223
BstKTI	GATC	5 cut(s)	286, 485, 748, 1174, 1426
BstMAI	GTCTC	3 cut(s)	462, 585, 684
BstMBI	GATC	5 cut(s)	283, 482, 745, 1171, 1423
BstMWI	GCNNNNNNNGC	2 cut(s)	772, 943
BstNI	CCWGG	3 cut(s)	98, 957, 1206
BstSCI	CCNGG	3 cut(s)	96, 955, 1204
BstSLI	GKGCMC	1 cut(s)	1212
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	2 cut(s)	393, 1399
BstX2I	RGATCY	2 cut(s)	482, 1423
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	2 cut(s)	482, 1423
BsuRI	GGCC	5 cut(s)	243, 960, 1022, 1187, 1238
BtsCI	GGATG	2 cut(s)	835, 880
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	747, 1327, 1428
BveI	ACCTGC	2 cut(s)	177, 476
Cac8I	GCNNGC	5 cut(s)	34, 969, 1066, 1185, 1219
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	2 cut(s)	1169, 1223
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	632, 1020, 1185
Csp6I	GTAC	1 cut(s)	896
CspAI	ACCGGT	1 cut(s)	617
CspCI	CAANNNNNGTGG	2 cut(s)	1228, 1263
CviAII	CATG	3 cut(s)	269, 419, 664
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	2 cut(s)	395, 1133
DpnI	GATC	5 cut(s)	285, 484, 747, 1173, 1425
DpnII	GATC	5 cut(s)	283, 482, 745, 1171, 1423
Eam1104I	CTCTTC	2 cut(s)	801, 994
EarI	CTCTTC	2 cut(s)	801, 994
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	96, 955, 1204
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	272, 422, 667
FalI	AAGNNNNNCTT	8 cut(s)	378, 410, 502, 534, 759, 791, 931, 963
FaqI	GGGAC	3 cut(s)	618, 674, 1066
FatI	CATG	3 cut(s)	268, 418, 663
FauI	CCCGC	1 cut(s)	1176
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	842, 887
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	4 cut(s)	134, 1065, 1074, 1179
GlaI	GCGC	2 cut(s)	1168, 1222
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	5 cut(s)	243, 960, 1022, 1187, 1238
HapII	CCGG	3 cut(s)	618, 731, 1198
HhaI	GCGC	2 cut(s)	1169, 1223
Hin1II	CATG	3 cut(s)	272, 422, 667
Hin6I	GCGC	2 cut(s)	1167, 1221
HinP1I	GCGC	2 cut(s)	1167, 1221
HindIII	AAGCTT	2 cut(s)	392, 773
HinfI	GANTC	8 cut(s)	71, 180, 545, 721, 727, 992, 1337, 1372
HpaII	CCGG	3 cut(s)	618, 731, 1198
HphI	GGTGA	3 cut(s)	158, 815, 1324
Hpy188I	TCNGA	4 cut(s)	76, 726, 979, 1273
Hpy188III	TCNNGA	7 cut(s)	68, 497, 542, 549, 567, 749, 996
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	7 cut(s)	173, 301, 314, 710, 831, 1281, 1362
HpyCH4III	ACNGT	5 cut(s)	232, 258, 1247, 1331, 1432
HpyCH4V	TGCA	7 cut(s)	422, 655, 740, 766, 833, 892, 1364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	772, 943
HpyF3I	CTNAG	2 cut(s)	395, 1133
Hsp92II	CATG	3 cut(s)	272, 422, 667
HspAI	GCGC	2 cut(s)	1167, 1221
KflI	GGGWCCC	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	283, 482, 745, 1171, 1423
LmnI	GCTCC	3 cut(s)	49, 93, 1095
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	2 cut(s)	262, 820
MaeI	CTAG	4 cut(s)	134, 1065, 1074, 1179
MaeIII	GTNAC	3 cut(s)	226, 246, 703
MalI	GATC	5 cut(s)	285, 484, 747, 1173, 1425
MboI	GATC	5 cut(s)	283, 482, 745, 1171, 1423
MboII	GAAGA	7 cut(s)	227, 398, 818, 876, 1011, 1153, 1404
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	2 cut(s)	482, 1423
MhlI	GDGCHC	2 cut(s)	13, 1212
MluCI	AATT	7 cut(s)	57, 316, 637, 668, 699, 1029, 1315
MlyI	GAGTC	2 cut(s)	1001, 1366
MnlI	CCTC	8 cut(s)	63, 204, 745, 1086, 1095, 1254, 1295, 1303
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	2 cut(s)	188, 315
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	3 cut(s)	618, 731, 1198
MspR9I	CCNGG	3 cut(s)	98, 957, 1206
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	3 cut(s)	98, 957, 1206
MwoI	GCNNNNNNNGC	2 cut(s)	772, 943
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	5 cut(s)	283, 482, 745, 1171, 1423
NheI	GCTAGC	1 cut(s)	1064
NlaIII	CATG	3 cut(s)	272, 422, 667
NlaIV	GGNNCC	4 cut(s)	95, 633, 634, 1021
NmuCI	GTSAC	2 cut(s)	226, 703
NsiI	ATGCAT	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	565
PaqCI	CACCTGC	2 cut(s)	177, 476
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	6 cut(s)	71, 180, 545, 721, 727, 1337
PinAI	ACCGGT	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	2 cut(s)	1000, 1366
PpsI	GAGTC	2 cut(s)	1000, 1366
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	3 cut(s)	96, 955, 1204
PspGI	CCWGG	3 cut(s)	96, 955, 1204
PspN4I	GGNNCC	4 cut(s)	95, 633, 634, 1021
PspPI	GGNCC	3 cut(s)	632, 1020, 1185
PspPPI	RGGWCCY	1 cut(s)	632
PsrI	GAACNNNNNNTAC	2 cut(s)	505, 537
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	482, 1423
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	188, 315
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	5 cut(s)	283, 482, 745, 1171, 1423
Sau96I	GGNCC	3 cut(s)	632, 1020, 1185
SchI	GAGTC	2 cut(s)	1001, 1366
ScrFI	CCNGG	3 cut(s)	98, 957, 1206
SduI	GDGCHC	2 cut(s)	13, 1212
SfaNI	GCATC	2 cut(s)	262, 820
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	565, 1047
SmoI	CTYRAG	2 cut(s)	565, 1047
SpeI	ACTAGT	1 cut(s)	1073
Sse9I	AATT	7 cut(s)	57, 316, 637, 668, 699, 1029, 1315
SsiI	CCGC	1 cut(s)	1183
SspMI	CTAG	4 cut(s)	134, 1065, 1074, 1179
StyD4I	CCNGG	3 cut(s)	96, 955, 1204
TaaI	ACNGT	5 cut(s)	232, 258, 1247, 1331, 1432
TaqI	TCGA	3 cut(s)	558, 566, 911
TasI	AATT	7 cut(s)	57, 316, 637, 668, 699, 1029, 1315
TfiI	GAWTC	6 cut(s)	71, 180, 545, 721, 727, 1337
Tru1I	TTAA	2 cut(s)	188, 315
Tru9I	TTAA	2 cut(s)	188, 315
TscAI	CASTG	3 cut(s)	747, 1327, 1435
TseFI	GTSAC	2 cut(s)	226, 703
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	226, 703
TspDTI	ATGAA	6 cut(s)	283, 416, 876, 1242, 1400, 1404
TspRI	CASTG	3 cut(s)	747, 1327, 1435
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	1315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	4 cut(s)	134, 1065, 1074, 1179
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.