Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Reverse (-)

7716080 .. 7718643

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGTCTGGTCTCTCCTTGAAATCAAAGAAAAAGGCCTTGCCACTACCACTCTGCAACCATACCTTGTTCCTCAGCCACCCCCACCCTCCAATGTTCAATCAGATAGTTTCAGTTTTGGCAACAAAGTCAGTCCAAGCATACTGCTCATAATCATAATTCTAGCCATTATTTTCTTTGTTTCTGGTTTGCTTCATCTCCTTGTTAGATTCCTTTTGAGACCTTCAAGCAGAGATGCAGATGACTTGGAGAGTGTGACTGTTCTTCAAGGACAATTGCAGCAACTGTTCCACCTCCATGATGCTGGGGTTGACCAGTCTTTCATAGACACTCTCCCTGTCTTCCATTACAAGGCCATCATAGGATTGAAAAATCCATTTGATTGTGCTGTGTGTTTGTGTGAGTTTGAGACTGAAGATAAGCTCAGATTGTTGCCCAAGTGCAGCCATGCCTTTCACATGGACTGCATAGACACATGGCTCTTGTCTCACTCAACTTGCCCTTTGTGTAGAGCTACTTTGCTCCCTGATTTCTCTCCAAACAATAGCTGTTCCCCCATTGTTCTTGTTCTTGAATCTGGAAGTGACAGCTCAAGAGAGATGGTCTCTGATAGAGAGGCTGCTATTGGCAGAACCAACTCAGTTTTGGGACCAAATTCCCATCTGGGTTTTCATGGAGACGTCGAATTGGGCTTGTCCCACCGCAAATCGTGCGAAATTGTGACGAAAGAGGAGGCTAATCCGACGGTAATGGTGGATTCAGGGGAAAAGGTAGTGCCTGTGAAGCTGGGAAAGTTCAGAAATGTGGATGGTGGTGGTGAAGGGAGTAGTGACATCAATGTGGATGCAAGAAGGTGCTTTTCTATGGGGTCATTTGCATATGTAATGGATGACAATTCTTCGTTGCAAGTACCCATTAGAGCCTCAATGAAAAAGCAACCAAGCAAGAAGCCTACTCTGCCATTAACACCCGGTCACAGGCAAGCAATGTCTGAATGTGATTGCGAGTCCAGAAGAGAATTCAAGTTCAGTGGGGTTGAAGCAATTGGAGGCCTTGAGACTCAAGGGACTGCTAGTGCTAGTATTACTAATGGCAATAATACCATTGGGAGGAGCAAGAGGGAGAGCTTCTCTATATCGAAGATTTGGCTCCGCGGGAAGAAAGAGAAGCCGAATAGGGCAGGAGATTCGTCGAGACTGGCCTCTTCCTTCCGGTTTCCTGTGCACCGGAGTGGCGTGGCTGCCGGAGAGGAAGTGAAGGCCAAGAATGTTGAGAGTGGGAGTAGGAGGACTATTTCAGAGATTGACATTGGCAGGTGGGAAAATGGAGGGAGTGAATTGGGTTGTGATGAGGAGAATGTTAGTGTTAGCTGTAACAGTTTGGATTCTCAAGCAAATCCACCATCTTTTGCAAGGAGGACACTGCTTTGGCTCGTGGGAAGACAGCAGAACAAAGTTGTTCATTCATCATTTGATCCTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

495

Amino Acids

54.03

Weight (kDa)

6.51

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1302
AatII	GACGTC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	1302
AccII	CGCG	1 cut(s)	1152
AciI	CCGC	3 cut(s)	700, 1150, 1152
AclWI	GGATC	1 cut(s)	1466
AcsI	RAATTY	2 cut(s)	652, 1016
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	1 cut(s)	909
AfiI	CCNNNNNNNGG	3 cut(s)	349, 975, 1107
AgsI	TTSAA	8 cut(s)	20, 98, 225, 266, 367, 572, 1021, 1037
AleI	CACNNNNGTG	1 cut(s)	1227
AluBI	AGCT	7 cut(s)	421, 512, 546, 588, 784, 1125, 1368
AluI	AGCT	7 cut(s)	421, 512, 546, 588, 784, 1125, 1368
Alw21I	GWGCWC	1 cut(s)	1224
Alw26I	GTCTC	8 cut(s)	15, 211, 401, 489, 607, 669, 1049, 1186
Alw44I	GTGCAC	1 cut(s)	1220
AlwI	GGATC	1 cut(s)	1466
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	5 cut(s)	34, 351, 1048, 1197, 1257
ApaLI	GTGCAC	1 cut(s)	1220
ApeKI	GCWGC	4 cut(s)	277, 441, 617, 1238
ApoI	RAATTY	2 cut(s)	652, 1016
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	969
AsuHPI	GGTGA	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	1224
BauI	CACGAG	1 cut(s)	1430
BbsI	GAAGAC	2 cut(s)	331, 1444
Bbv12I	GWGCWC	1 cut(s)	1224
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	4 cut(s)	289, 453, 604, 1225
BccI	CCATC	5 cut(s)	362, 592, 666, 800, 1408
BcgI	CGANNNNNNTGC	2 cut(s)	1167, 1201
BcnI	CCSGG	1 cut(s)	969
BcoDI	GTCTC	8 cut(s)	15, 211, 401, 489, 607, 669, 1049, 1186
BfaI	CTAG	4 cut(s)	161, 1071, 1077, 1476
BfuAI	ACCTGC	1 cut(s)	1302
BisI	GCNGC	4 cut(s)	278, 442, 618, 1239
BlsI	GCNGC	4 cut(s)	279, 443, 619, 1240
Bme1390I	CCNGG	1 cut(s)	969
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	2 cut(s)	648, 1148
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	223, 289, 832
BpiI	GAAGAC	2 cut(s)	331, 1444
BplI	GAGNNNNNCTC	4 cut(s)	587, 619, 1112, 1144
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	4 cut(s)	574, 1044, 1073, 1371
BpuMI	CCSGG	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	678
BsaI	GGTCTC	3 cut(s)	15, 211, 607
BsaJI	CCNNGG	1 cut(s)	1150
BsaWI	WCCGGW	2 cut(s)	1209, 1224
BsaXI	ACNNNNNCTCC	2 cut(s)	1236, 1266
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 975, 1107
Bse1I	ACTGG	2 cut(s)	313, 1200
Bse3DI	GCAATG	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	1150
BseGI	GGATG	3 cut(s)	811, 847, 892
BseLI	CCNNNNNNNGG	3 cut(s)	349, 975, 1107
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	3 cut(s)	86, 436, 651
BseNI	ACTGG	2 cut(s)	313, 1200
BseRI	GAGGAG	3 cut(s)	743, 1123, 1364
BseSI	GKGCMC	1 cut(s)	1224
BseXI	GCAGC	4 cut(s)	289, 453, 604, 1225
BseYI	CCCAGC	2 cut(s)	302, 784
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	1152
BshFI	GGCC	5 cut(s)	36, 353, 1050, 1199, 1259
BsiHKAI	GWGCWC	1 cut(s)	1224
BsiSI	CCGG	4 cut(s)	969, 1210, 1225, 1242
BslFI	GGGAC	3 cut(s)	660, 679, 1078
BslI	CCNNNNNNNGG	3 cut(s)	349, 975, 1107
BsmAI	GTCTC	8 cut(s)	15, 211, 401, 489, 607, 669, 1049, 1186
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	3 cut(s)	660, 679, 1078
BsnI	GGCC	5 cut(s)	36, 353, 1050, 1199, 1259
Bso31I	GGTCTC	3 cut(s)	15, 211, 607
Bsp1286I	GDGCHC	1 cut(s)	1224
Bsp143I	GATC	1 cut(s)	1471
BspACI	CCGC	3 cut(s)	700, 1150, 1152
BspANI	GGCC	5 cut(s)	36, 353, 1050, 1199, 1259
BspCNI	CTCAG	3 cut(s)	85, 435, 650
BspFNI	CGCG	1 cut(s)	1152
BspLI	GGNNCC	2 cut(s)	648, 1148
BspMI	ACCTGC	1 cut(s)	1302
BspPI	GGATC	1 cut(s)	1466
BspTNI	GGTCTC	3 cut(s)	15, 211, 607
BsrDI	GCAATG	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	313, 1200
BssECI	CCNNGG	1 cut(s)	1150
BssMI	GATC	1 cut(s)	1471
BssNI	GRCGYC	1 cut(s)	678
BssSI	CACGAG	1 cut(s)	1430
Bst2BI	CACGAG	1 cut(s)	1430
Bst4CI	ACNGT	4 cut(s)	259, 285, 745, 1376
Bst6I	CTCTTC	2 cut(s)	1006, 1207
BstACI	GRCGYC	1 cut(s)	678
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	3 cut(s)	72, 422, 637
BstDSI	CCRYGG	1 cut(s)	1150
BstF5I	GGATG	3 cut(s)	811, 847, 892
BstFNI	CGCG	1 cut(s)	1152
BstKTI	GATC	1 cut(s)	1474
BstMAI	GTCTC	8 cut(s)	15, 211, 401, 489, 607, 669, 1049, 1186
BstMBI	GATC	1 cut(s)	1471
BstMWI	GCNNNNNNNGC	3 cut(s)	708, 781, 955
BstSCI	CCNGG	1 cut(s)	967
BstSLI	GKGCMC	1 cut(s)	1224
BstUI	CGCG	1 cut(s)	1152
BstV1I	GCAGC	4 cut(s)	289, 453, 604, 1225
BstV2I	GAAGAC	2 cut(s)	331, 1444
BstXI	CCANNNNNNTGG	1 cut(s)	302
BsuRI	GGCC	5 cut(s)	36, 353, 1050, 1199, 1259
BtgI	CCRYGG	1 cut(s)	1150
BtsCI	GGATG	3 cut(s)	811, 847, 892
BtsI	GCAGTG	1 cut(s)	1418
BtsIMutI	CAGTG	2 cut(s)	1033, 1418
BveI	ACCTGC	1 cut(s)	1302
Cac8I	GCNNGC	1 cut(s)	981
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	647
Cfr42I	CCGCGG	1 cut(s)	1153
Csp6I	GTAC	1 cut(s)	908
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	5 cut(s)	296, 446, 457, 474, 671
CviQI	GTAC	1 cut(s)	908
DdeI	CTNAG	3 cut(s)	72, 422, 637
DpnI	GATC	1 cut(s)	1473
DpnII	GATC	1 cut(s)	1471
Eam1104I	CTCTTC	2 cut(s)	1006, 1207
EarI	CTCTTC	2 cut(s)	1006, 1207
Eco147I	AGGCCT	2 cut(s)	36, 1050
Eco31I	GGTCTC	3 cut(s)	15, 211, 607
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	1016
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	5 cut(s)	299, 449, 460, 477, 674
FaqI	GGGAC	3 cut(s)	660, 679, 1078
FatI	CATG	5 cut(s)	295, 445, 456, 473, 670
FauI	CCCGC	1 cut(s)	1145
FauNDI	CATATG	1 cut(s)	877
Fnu4HI	GCNGC	4 cut(s)	278, 442, 618, 1239
FokI	GGATG	3 cut(s)	818, 854, 899
Fsp4HI	GCNGC	4 cut(s)	278, 442, 618, 1239
FspBI	CTAG	4 cut(s)	161, 1071, 1077, 1476
GluI	GCNGC	4 cut(s)	278, 442, 618, 1239
GsaI	CCCAGC	2 cut(s)	306, 788
HaeIII	GGCC	5 cut(s)	36, 353, 1050, 1199, 1259
HapII	CCGG	4 cut(s)	969, 1210, 1225, 1242
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	5 cut(s)	299, 449, 460, 477, 674
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	7 cut(s)	207, 572, 755, 1004, 1057, 1184, 1382
HpaII	CCGG	4 cut(s)	969, 1210, 1225, 1242
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	2 cut(s)	310, 1222
Hpy188I	TCNGA	7 cut(s)	103, 425, 607, 741, 797, 991, 1297
Hpy188III	TCNNGA	5 cut(s)	569, 576, 591, 1008, 1191
Hpy8I	GTNNAC	2 cut(s)	310, 1222
Hpy99I	CGWCG	3 cut(s)	683, 745, 1192
HpyAV	CCTTC	5 cut(s)	231, 812, 843, 1216, 1249
HpyCH4III	ACNGT	4 cut(s)	259, 285, 745, 1376
HpyCH4IV	ACGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	708, 781, 955
HpyF3I	CTNAG	3 cut(s)	72, 422, 637
HpySE526I	ACGT	1 cut(s)	678
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	5 cut(s)	299, 449, 460, 477, 674
KspI	CCGCGG	1 cut(s)	1153
Kzo9I	GATC	1 cut(s)	1471
LmnI	GCTCC	3 cut(s)	525, 1110, 1152
Lsp1109I	GCAGC	4 cut(s)	289, 453, 604, 1225
LweI	GCATC	3 cut(s)	223, 289, 832
MaeI	CTAG	4 cut(s)	161, 1071, 1077, 1476
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	6 cut(s)	253, 581, 718, 827, 971, 1370
MalI	GATC	1 cut(s)	1473
MboI	GATC	1 cut(s)	1471
MboII	GAAGA	9 cut(s)	254, 331, 425, 888, 1023, 1150, 1168, 1194, 1449
MfeI	CAATTG	2 cut(s)	272, 1041
MhlI	GDGCHC	1 cut(s)	1224
MluCI	AATT	9 cut(s)	156, 272, 652, 683, 714, 892, 1016, 1041, 1334
MlyI	GAGTC	2 cut(s)	1013, 1051
MmeI	TCCRAC	1 cut(s)	764
MseI	TTAA	1 cut(s)	962
MslI	CAYNNNNRTG	3 cut(s)	294, 836, 1227
MspA1I	CMGCKG	1 cut(s)	1152
MspI	CCGG	4 cut(s)	969, 1210, 1225, 1242
MspR9I	CCNGG	1 cut(s)	969
MunI	CAATTG	2 cut(s)	272, 1041
MvnI	CGCG	1 cut(s)	1152
MwoI	GCNNNNNNNGC	3 cut(s)	708, 781, 955
NciI	CCSGG	1 cut(s)	969
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	1 cut(s)	1471
NlaIII	CATG	5 cut(s)	299, 449, 460, 477, 674
NlaIV	GGNNCC	2 cut(s)	648, 1148
NmuCI	GTSAC	5 cut(s)	253, 581, 718, 827, 971
OliI	CACNNNNGTG	1 cut(s)	1227
PaqCI	CACCTGC	1 cut(s)	1302
PceI	AGGCCT	2 cut(s)	36, 1050
PfeI	GAWTC	5 cut(s)	207, 572, 755, 1184, 1382
PkrI	GCNGC	4 cut(s)	279, 443, 619, 1240
PleI	GAGTC	2 cut(s)	1012, 1051
PpsI	GAGTC	2 cut(s)	1012, 1051
PspFI	CCCAGC	2 cut(s)	302, 784
PspN4I	GGNNCC	2 cut(s)	648, 1148
PspPI	GGNCC	1 cut(s)	647
PstNI	CAGNNNCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	909
RsaNI	GTAC	1 cut(s)	908
RseI	CAYNNNNRTG	3 cut(s)	294, 836, 1227
SacII	CCGCGG	1 cut(s)	1153
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	4 cut(s)	278, 442, 618, 1239
Sau3AI	GATC	1 cut(s)	1471
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	2 cut(s)	1013, 1051
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	1224
SfaNI	GCATC	3 cut(s)	223, 289, 832
Sfr303I	CCGCGG	1 cut(s)	1153
SgrBI	CCGCGG	1 cut(s)	1153
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	3 cut(s)	294, 836, 1227
SmlI	CTYRAG	4 cut(s)	589, 1052, 1059, 1386
SmoI	CTYRAG	4 cut(s)	589, 1052, 1059, 1386
Sse9I	AATT	9 cut(s)	156, 272, 652, 683, 714, 892, 1016, 1041, 1334
SseBI	AGGCCT	2 cut(s)	36, 1050
SsiI	CCGC	3 cut(s)	700, 1150, 1152
SspMI	CTAG	4 cut(s)	161, 1071, 1077, 1476
StuI	AGGCCT	2 cut(s)	36, 1050
StyD4I	CCNGG	1 cut(s)	967
TaaI	ACNGT	4 cut(s)	259, 285, 745, 1376
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	3 cut(s)	681, 1136, 1190
TasI	AATT	9 cut(s)	156, 272, 652, 683, 714, 892, 1016, 1041, 1334
TfiI	GAWTC	5 cut(s)	207, 572, 755, 1184, 1382
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TscAI	CASTG	2 cut(s)	1033, 1425
TseFI	GTSAC	5 cut(s)	253, 581, 718, 827, 971
TseI	GCWGC	4 cut(s)	277, 441, 617, 1238
Tsp45I	GTSAC	5 cut(s)	253, 581, 718, 827, 971
TspDTI	ATGAA	6 cut(s)	182, 310, 659, 941, 1448, 1452
TspRI	CASTG	2 cut(s)	1033, 1425
VneI	GTGCAC	1 cut(s)	1220
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	652, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XspI	CTAG	4 cut(s)	161, 1071, 1077, 1476
ZraI	GACGTC	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.