Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Reverse (-)

32469600 .. 32471475

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1260900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACACCAAGCCTCAACAACTTTCTGGGATTTGGGAGTTTTGGAGTTGGACTGACTTGCAGCTTTGCATACCAGATGGGGTTCTTTGGGGTTGACCAGTCCTTCATCGACACCCTCCCTGTCTTCCACTACAAAGCCATCATTGGATTGAAAAACCCTTTTGATTGTGCTGTCTGTTTGTGTGAGTTTGAGGGTGAGGATAAGCTCAGATTGCTGCCCAAATGCAGCCATGCCTTCCACGTGGACTGCATTGACACTTGGCTCTTGTCTCACTCCACTTGCCCTCTCTGTAGAGCTACTTTGCTCCCTGACTTCTCTTCCAACAATAGCTGCTCACCCAGTGTTTTTGTTCTTGAGTCTGGGAGTGACAGCTCCAGAGAGATGATCTCTGATAGAGATGGACACAATTCCCATCTGGGTTTTCATGGAGACATGGAATTGGGGCAGCCCCGCGCCGATGTGTCGAACAAATCTTGCGAAATTGTGGCGAAAGATGAGGCTAACCCGGCGGTAACCGTGGATTTGGGGGAGAAGGTAGTGCCCGTGAAGCTAGGGAAGTTCAGAAATGTGGATGGGGGTGGTGAGGGGAGTAGTGAAAGCAATGCGGATGCAAGGAGGTGCTTTTCTATGGGATCATTTGCGTATGTGTTGGATGAAAAATCTGAACTGCAAGTAGCGATTGGAGCATCGATGAAAAAGCAGTCGACCAAGAAGCCTACTCTGCCGTTGGCTCCAGGTCACAGGCAAGCAATGTCGGAATGCGATTGTGAGTCAACGAGAGAGTTCAAGTTCAGTGGCATTGAAGCAATCGGAAGCCTTGAAACTCAAGTGACTAGCACTAGTGCTAGTATTACTAATGGCAGTGGCAGTAATGGCATTGAGTGGAGCAAGAGGGAGAGCTTCTCGATATCGAAGATTTGGCTTAGGGGGAAGAAGGAGAAGCCAAATGGGGCGTCGTATTCGTCAAGAAGGGCCTTTTCTTTCCGGTTTCCGGTGCATCGGAGTGCTATGGTTGCAGGGGAGGAAGTGAAGGGCAAGAATGTTGGGACTGAGAGTCGGAGGATAATCTCAGAGATTGACATAAGGAGGTGGGAAAATGGAGGGAGTGAAATGGGTTGTGATGAGGAGAATGTTAGCTGTAACAGTTTGGATTCACAAGCAAATCCACCATCTTTTACTAGGAGAACGCTCCTTTGGCTTATGGGAAGACAACAGAACAAAGTTGTTCATTCATCACTTGATCCTAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

418

Amino Acids

45.56

Weight (kDa)

6.1

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	51 - 98	3.6e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	53 - 100	4.9e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	55 - 98	3e-14	Ring finger domain
zf-RING_11	PF17123	55 - 84	3e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	704
AccII	CGCG	1 cut(s)	453
AciI	CCGC	3 cut(s)	451, 509, 605
AclWI	GGATC	2 cut(s)	640, 1235
AcvI	CACGTG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	953
AdeI	CACNNNGTG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	991
AgsI	TTSAA	4 cut(s)	151, 787, 803, 821
AhdI	GACNNNNNGTC	1 cut(s)	1053
AhlI	ACTAGT	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	1177, 1209
AluBI	AGCT	8 cut(s)	63, 205, 296, 330, 372, 550, 900, 1137
AluI	AGCT	8 cut(s)	63, 205, 296, 330, 372, 550, 900, 1137
Alw26I	GTCTC	2 cut(s)	273, 423
AlwI	GGATC	2 cut(s)	640, 1235
AoxI	GGCC	1 cut(s)	972
ApeKI	GCWGC	5 cut(s)	60, 214, 225, 330, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	972
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	206, 327, 593
BaeGI	GKGCMC	1 cut(s)	543
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	115, 1213
BbvI	GCAGC	5 cut(s)	72, 201, 237, 317, 457
BccI	CCATC	6 cut(s)	70, 146, 392, 420, 566, 1177
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	1 cut(s)	735
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	273, 423
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	6 cut(s)	551, 834, 840, 846, 1179, 1245
BfmI	CTRYAG	1 cut(s)	289
BisI	GCNGC	5 cut(s)	61, 215, 226, 331, 446
BlsI	GCNGC	5 cut(s)	62, 216, 227, 332, 447
Bme1390I	CCNGG	2 cut(s)	506, 735
BmeRI	GACNNNNNGTC	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	972
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	506, 735
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	3 cut(s)	598, 695, 1006
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	115, 1213
BplI	GAGNNNNNCTC	4 cut(s)	371, 403, 887, 919
BpmI	CTGGAG	2 cut(s)	358, 717
Bpu10I	CCTNAGC	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	374, 810
BpuMI	CCSGG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	689
BsaAI	YACGTR	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	953
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	984, 991
Bsc4I	CCNNNNNNNGG	1 cut(s)	991
Bse1I	ACTGG	2 cut(s)	97, 339
Bse3DI	GCAATG	2 cut(s)	607, 756
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	577, 613, 658
BseLI	CCNNNNNNNGG	1 cut(s)	991
BseMI	GCAATG	2 cut(s)	607, 756
BseMII	CTCAG	3 cut(s)	220, 1041, 1083
BseNI	ACTGG	2 cut(s)	97, 339
BseRI	GAGGAG	1 cut(s)	1139
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	5 cut(s)	72, 201, 237, 317, 457
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	974
BshVI	ATCGAT	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	506, 985, 992
BslFI	GGGAC	1 cut(s)	1060
BslI	CCNNNNNNNGG	1 cut(s)	991
BsmAI	GTCTC	2 cut(s)	273, 423
BsmFI	GGGAC	1 cut(s)	1060
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	384, 632, 1240
BspACI	CCGC	3 cut(s)	451, 509, 605
BspANI	GGCC	1 cut(s)	974
BspCNI	CTCAG	3 cut(s)	219, 1042, 1082
BspDI	ATCGAT	1 cut(s)	689
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	640, 1235
BsrDI	GCAATG	2 cut(s)	607, 756
BsrI	ACTGG	2 cut(s)	97, 339
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	384, 632, 1240
BssNI	GRCGYC	1 cut(s)	953
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	517, 1145
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	953
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	4 cut(s)	206, 923, 1050, 1069
BstDSI	CCRYGG	1 cut(s)	516
BstEII	GGTNACC	1 cut(s)	511
BstF5I	GGATG	3 cut(s)	577, 613, 658
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	387, 635, 1243
BstMAI	GTCTC	2 cut(s)	273, 423
BstMBI	GATC	3 cut(s)	384, 632, 1240
BstMWI	GCNNNNNNNGC	8 cut(s)	211, 506, 547, 683, 721, 873, 1013, 1195
BstNI	CCWGG	1 cut(s)	735
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	504, 733
BstSFI	CTRYAG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	72, 201, 237, 317, 457
BstV2I	GAAGAC	2 cut(s)	115, 1213
Bsu15I	ATCGAT	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	974
BsuTUI	ATCGAT	1 cut(s)	689
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	577, 613, 658
BtsI	GCAGTG	1 cut(s)	868
BtsIMutI	CAGTG	3 cut(s)	346, 799, 868
Cac8I	GCNNGC	1 cut(s)	747
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	972
ClaI	ATCGAT	1 cut(s)	689
CseI	GACGC	1 cut(s)	942
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	3 cut(s)	230, 425, 433
DdeI	CTNAG	4 cut(s)	206, 923, 1050, 1069
DpnI	GATC	3 cut(s)	386, 634, 1242
DpnII	GATC	3 cut(s)	384, 632, 1240
DraIII	CACNNNGTG	1 cut(s)	341
DriI	GACNNNNNGTC	1 cut(s)	1053
Eam1104I	CTCTTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	1053
EarI	CTCTTC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	909
Eco72I	CACGTG	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	972
EcoO65I	GGTNACC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	909
FaeI	CATG	3 cut(s)	233, 428, 436
FaiI	YATR	9 cut(s)	70, 231, 426, 434, 629, 645, 1010, 1082, 1202
FaqI	GGGAC	1 cut(s)	1060
FatI	CATG	3 cut(s)	229, 424, 432
FauI	CCCGC	1 cut(s)	458
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	5 cut(s)	61, 215, 226, 331, 446
FokI	GGATG	3 cut(s)	584, 620, 665
Fsp4HI	GCNGC	5 cut(s)	61, 215, 226, 331, 446
FspBI	CTAG	6 cut(s)	551, 834, 840, 846, 1179, 1245
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	5 cut(s)	61, 215, 226, 331, 446
GsuI	CTGGAG	2 cut(s)	358, 717
HaeIII	GGCC	1 cut(s)	974
HapII	CCGG	3 cut(s)	506, 985, 992
HgaI	GACGC	1 cut(s)	942
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	953
Hin1II	CATG	3 cut(s)	233, 428, 436
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	3 cut(s)	94, 705, 774
HindII	GTYRAC	3 cut(s)	94, 705, 774
HinfI	GANTC	4 cut(s)	356, 770, 1054, 1151
HpaII	CCGG	3 cut(s)	506, 985, 992
HphI	GGTGA	3 cut(s)	206, 327, 593
Hpy166II	GTNNAC	4 cut(s)	94, 244, 705, 774
Hpy188I	TCNGA	9 cut(s)	209, 391, 563, 664, 757, 812, 1002, 1059, 1072
Hpy188III	TCNNGA	4 cut(s)	353, 375, 904, 966
Hpy8I	GTNNAC	4 cut(s)	94, 244, 705, 774
Hpy99I	CGWCG	1 cut(s)	958
HpyAV	CCTTC	6 cut(s)	112, 244, 526, 928, 963, 1024
HpyCH4III	ACNGT	2 cut(s)	517, 1145
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	60, 68, 225, 249, 611, 670, 997, 1016
HpyF10VI	GCNNNNNNNGC	8 cut(s)	211, 506, 547, 683, 721, 873, 1013, 1195
HpyF3I	CTNAG	4 cut(s)	206, 923, 1050, 1069
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	953
Hsp92II	CATG	3 cut(s)	233, 428, 436
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	384, 632, 1240
LmnI	GCTCC	6 cut(s)	309, 377, 683, 736, 885, 1194
Lsp1109I	GCAGC	5 cut(s)	72, 201, 237, 317, 457
LweI	GCATC	3 cut(s)	598, 695, 1006
MaeI	CTAG	6 cut(s)	551, 834, 840, 846, 1179, 1245
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	5 cut(s)	365, 511, 737, 829, 1139
MalI	GATC	3 cut(s)	386, 634, 1242
MboI	GATC	3 cut(s)	384, 632, 1240
MboII	GAAGA	5 cut(s)	115, 309, 925, 943, 1218
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	3 cut(s)	406, 437, 480
MlyI	GAGTC	3 cut(s)	365, 779, 1063
MmeI	TCCRAC	5 cut(s)	28, 345, 630, 735, 1037
MseI	TTAA	1 cut(s)	1252
MslI	CAYNNNNRTG	1 cut(s)	1002
MspI	CCGG	3 cut(s)	506, 985, 992
MspR9I	CCNGG	2 cut(s)	506, 735
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	8 cut(s)	211, 506, 547, 683, 721, 873, 1013, 1195
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	384, 632, 1240
NlaIII	CATG	3 cut(s)	233, 428, 436
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	3 cut(s)	365, 737, 829
PctI	GAATGC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	1151
PkrI	GCNGC	5 cut(s)	62, 216, 227, 332, 447
PleI	GAGTC	3 cut(s)	364, 778, 1062
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	3 cut(s)	364, 778, 1062
Ppu21I	YACGTR	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	972
RseI	CAYNNNNRTG	1 cut(s)	1002
SalI	GTCGAC	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	1252
SatI	GCNGC	5 cut(s)	61, 215, 226, 331, 446
Sau3AI	GATC	3 cut(s)	384, 632, 1240
Sau96I	GGNCC	1 cut(s)	972
SchI	GAGTC	3 cut(s)	365, 779, 1063
ScrFI	CCNGG	2 cut(s)	506, 735
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	3 cut(s)	598, 695, 1006
SfcI	CTRYAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	2 cut(s)	353, 825
SmoI	CTYRAG	2 cut(s)	353, 825
SpeI	ACTAGT	1 cut(s)	839
Sse9I	AATT	3 cut(s)	406, 437, 480
SsiI	CCGC	3 cut(s)	451, 509, 605
SspMI	CTAG	6 cut(s)	551, 834, 840, 846, 1179, 1245
StyD4I	CCNGG	2 cut(s)	504, 733
TaaI	ACNGT	2 cut(s)	517, 1145
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	6 cut(s)	108, 464, 689, 704, 905, 911
TasI	AATT	3 cut(s)	406, 437, 480
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	1 cut(s)	1252
Tru9I	TTAA	1 cut(s)	1252
TscAI	CASTG	3 cut(s)	346, 799, 868
TseFI	GTSAC	3 cut(s)	365, 737, 829
TseI	GCWGC	5 cut(s)	60, 214, 225, 330, 445
Tsp45I	GTSAC	3 cut(s)	365, 737, 829
TspDTI	ATGAA	6 cut(s)	94, 413, 669, 707, 1217, 1221
TspRI	CASTG	3 cut(s)	346, 799, 868
XmiI	GTMKAC	1 cut(s)	704
XspI	CTAG	6 cut(s)	551, 834, 840, 846, 1179, 1245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.