Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012281

Physical Location & Seq

Genomic Coordinates Reverse (-)

11395541 .. 11397952

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09580.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTTGCAGGTTCTGCTTGAAATCAAAGAAGCAGGATTTTCTGCTCCACCACCTCCAATTTCGAATCTTGAATCAGATAGTTTCAGTTTCGGGAACAAGGTCAGTCCGAGCATATTGCTCATAATCATAATTCTAGCCATTATTTTCTTTGTTTCCGGTTTGCTTCACCTGCTCATTAGATTCCTTTTAAGACCTCCAAGCAGAGACACAGATGACTTGGAGAGTGTGACTGTTCTTCAAGGCCAGTTACAGCAACTCTTTCATCTGCATGATGCTGGAGTTGACCAGTCCTTCATAGACACCCTTCCTGTGTTTAATTACAAAGCCATTATTGGATTGAAAAATCCATTTGATTGTGCTGTTTGTTTATGTGAGTTTGAGCCTGAAGACAAGCTTAGATTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATAGACACTTGGCTCCTGTCTCACTCCACCTGCCCTCTGTGTAGATCCACTTTGCTTCCTGAGTTTTCTCAAAACAATACTTGTCCTCCCATTGTTCTTGTTCTTGAATCGGGAAGTGTTGAAAACTCGAGAGAGATCAATGTTTCTGGTAGAGACAATCTTGCTGCCGTTGGCAGGACAGGTTCTGCTTTGGGTCCTAATTCCCATCTTGGTTTACATGGAGACGTAGAATTGGGCTTGTCTCAACACAAATCTTGCGAAATTGTGACGAAAAATGAAGTGAATCCGAATCCGGCAGTTGCAGTGGATCAAGAGGAAAAGGTAGTGCAAGTGAAGCTAGGCAAGTTCAGGAATGTAGATGGTGGTGAAGGGAGTAGTAATAGAAACGTGGATGCAAGGAGGTGTTTCTCGATGGGGTCTTTTGCTTATGTAATGGATGAGACCTCTTCATTGCAAGTACCCATTAGAAGCTCGACGAAAAAGCAATCTAGCAAGAAGCCCAGTTTGCCTTTAGAACCAGGCCATAGGCAAGCAATGTCCGAATGCGATTTCGAGTCCAGGAGAGAGTTCAAGTTTAATGGGGTAGAAGCTATTGGAAGCCTTGAAAGTCAAGGGACTAATAGTGCTAGCATTACTAGTGGCAATGGCATTGGGAAGAGCAAGAGGGAGAGCTTCTCTATATCAAAGATTTGGCTCAGGGGGAAGAAAGAAAAGCCAAATGTGGTTGCGGCTGACCTGTCTAGGCGGGCCTTCTCGTTCCGGTTTCCAGGGCACCGGGAAGGCTCAGATGAAAGCATGGCCAAGAATGGTGGTGGGAGTAGGAGGACTATTTCTGAAGTTGACATTGCAAGGTGGGAAAATGGAGGGAGTGAGGGGAATTTCAGCTGCAACAGTTTGGATTCTCAAGCAAATGCACCATCTTTTGCAAGAAGGACACTGCTTTGGCTGATGGGAAGACAGAACAAAGTTGTTCATTCATCTTTAGATCCCACTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

479

Amino Acids

52.39

Weight (kDa)

6.65

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18650 AT4G30400
fragaria_vesca	FvH4_4g09580 FvH4_4g09580
malus_domestica	MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica	Prupe.1G097100_v2.0.a1
pyrus_communis	pycom16g23190
rosa_chinensis	RchiOBHm_Chr4g0404881
rosa_laevigata	RLG00000008897
rosa_multiflora	Rmu_sc0001179.1_g000015
rosa_roxburghii	Rroxscaffold_5G00349010
rosa_rugosa	Rorug04G0049700 Rorug04G0049700
rosa_samantha	Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana	Rw4G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	177, 476
Acc36I	ACCTGC	2 cut(s)	177, 476
AccB1I	GGYRCC	1 cut(s)	1209
AciI	CCGC	2 cut(s)	1166, 1183
AclWI	GGATC	3 cut(s)	477, 753, 1418
AcoI	YGGCCR	1 cut(s)	1236
AcsI	RAATTY	1 cut(s)	1315
AcuI	CTGAAG	2 cut(s)	405, 1293
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	1 cut(s)	612
AgsI	TTSAA	8 cut(s)	20, 71, 239, 340, 545, 560, 1009, 1043
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	3 cut(s)	955, 995, 1204
AluBI	AGCT	6 cut(s)	394, 775, 909, 1028, 1110, 1323
AluI	AGCT	6 cut(s)	394, 775, 909, 1028, 1110, 1323
Alw26I	GTCTC	6 cut(s)	198, 462, 585, 654, 684, 872
AlwI	GGATC	3 cut(s)	477, 753, 1418
AlwNI	CAGNNNCTG	2 cut(s)	13, 623
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	4 cut(s)	241, 958, 1185, 1236
ApeKI	GCWGC	2 cut(s)	602, 1323
ApoI	RAATTY	1 cut(s)	1315
AspS9I	GGNCC	2 cut(s)	632, 1185
AsuC2I	CCSGG	1 cut(s)	1214
AsuHPI	GGTGA	2 cut(s)	158, 815
AsuII	TTCGAA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	1064
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	1212
BalI	TGGCCA	1 cut(s)	1238
BanI	GGYRCC	1 cut(s)	1209
BbsI	GAAGAC	2 cut(s)	393, 1399
BbvI	GCAGC	2 cut(s)	589, 1310
BccI	CCATC	5 cut(s)	651, 791, 844, 1363, 1381
BceAI	ACGGC	1 cut(s)	590
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	3 cut(s)	957, 997, 1206
BcnI	CCSGG	1 cut(s)	1214
BcoDI	GTCTC	6 cut(s)	198, 462, 585, 654, 684, 872
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	6 cut(s)	134, 776, 927, 1065, 1074, 1179
BfuAI	ACCTGC	2 cut(s)	177, 476
BisI	GCNGC	3 cut(s)	603, 1167, 1324
BlsI	GCNGC	3 cut(s)	604, 1168, 1325
Bme1390I	CCNGG	4 cut(s)	957, 997, 1206, 1214
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	632, 1185
BmiI	GGNNCC	3 cut(s)	452, 633, 1211
BmrFI	CCNGG	4 cut(s)	957, 997, 1206, 1214
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	2 cut(s)	262, 820
BmtI	GCTAGC	1 cut(s)	1068
BmuI	ACTGGG	1 cut(s)	933
BpiI	GAAGAC	2 cut(s)	393, 1399
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	1133
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	1326
BpuMI	CCSGG	1 cut(s)	1214
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	1 cut(s)	1205
BsaWI	WCCGGW	2 cut(s)	155, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	3 cut(s)	244, 286, 939
Bse3DI	GCAATG	4 cut(s)	887, 978, 1087, 1281
BseBI	CCWGG	3 cut(s)	957, 997, 1206
BseDI	CCNNGG	1 cut(s)	1205
BseGI	GGATG	2 cut(s)	835, 880
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseMI	GCAATG	4 cut(s)	887, 978, 1087, 1281
BseMII	CTCAG	3 cut(s)	489, 1147, 1236
BseNI	ACTGG	3 cut(s)	244, 286, 939
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	2 cut(s)	589, 1310
BshFI	GGCC	4 cut(s)	243, 960, 1187, 1238
BshNI	GGYRCC	1 cut(s)	1209
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	4 cut(s)	156, 731, 1198, 1213
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	6 cut(s)	198, 462, 585, 654, 684, 872
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	1066
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	4 cut(s)	243, 960, 1187, 1238
Bso31I	GGTCTC	1 cut(s)	872
BsoBI	CYCGRG	1 cut(s)	565
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp143I	GATC	4 cut(s)	482, 573, 745, 1423
BspACI	CCGC	2 cut(s)	1166, 1183
BspANI	GGCC	4 cut(s)	243, 960, 1187, 1238
BspCNI	CTCAG	3 cut(s)	490, 1146, 1235
BspLI	GGNNCC	3 cut(s)	452, 633, 1211
BspMI	ACCTGC	2 cut(s)	177, 476
BspOI	GCTAGC	1 cut(s)	1068
BspPI	GGATC	3 cut(s)	477, 753, 1418
BspQI	GCTCTTC	1 cut(s)	1088
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	1209
BspTNI	GGTCTC	1 cut(s)	872
BsrDI	GCAATG	4 cut(s)	887, 978, 1087, 1281
BsrI	ACTGG	3 cut(s)	244, 286, 939
BssECI	CCNNGG	1 cut(s)	1205
BssMI	GATC	4 cut(s)	482, 573, 745, 1423
Bst2UI	CCWGG	3 cut(s)	957, 997, 1206
Bst4CI	ACNGT	2 cut(s)	232, 1331
Bst6I	CTCTTC	2 cut(s)	889, 1088
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	969, 1066, 1185
BstDEI	CTNAG	4 cut(s)	395, 498, 1133, 1222
BstF5I	GGATG	2 cut(s)	835, 880
BstKTI	GATC	4 cut(s)	485, 576, 748, 1426
BstMAI	GTCTC	6 cut(s)	198, 462, 585, 654, 684, 872
BstMBI	GATC	4 cut(s)	482, 573, 745, 1423
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 169, 772, 943
BstNI	CCWGG	3 cut(s)	957, 997, 1206
BstSCI	CCNGG	4 cut(s)	955, 995, 1204, 1212
BstSLI	GKGCMC	1 cut(s)	1212
BstV1I	GCAGC	2 cut(s)	589, 1310
BstV2I	GAAGAC	2 cut(s)	393, 1399
BstX2I	RGATCY	2 cut(s)	482, 1423
BstYI	RGATCY	2 cut(s)	482, 1423
BsuRI	GGCC	4 cut(s)	243, 960, 1187, 1238
BtsCI	GGATG	2 cut(s)	835, 880
BtsI	GCAGTG	2 cut(s)	747, 1373
BtsIMutI	CAGTG	2 cut(s)	747, 1373
BveI	ACCTGC	2 cut(s)	177, 476
Cac8I	GCNNGC	3 cut(s)	969, 1066, 1185
CaiI	CAGNNNCTG	2 cut(s)	13, 623
Cfr13I	GGNCC	2 cut(s)	632, 1185
Csp6I	GTAC	1 cut(s)	896
CspCI	CAANNNNNGTGG	2 cut(s)	1228, 1263
CviAII	CATG	4 cut(s)	269, 419, 656, 1234
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	4 cut(s)	395, 498, 1133, 1222
DpnI	GATC	4 cut(s)	484, 575, 747, 1425
DpnII	GATC	4 cut(s)	482, 573, 745, 1423
EaeI	YGGCCR	1 cut(s)	1236
Eam1104I	CTCTTC	2 cut(s)	889, 1088
EarI	CTCTTC	2 cut(s)	889, 1088
Eco31I	GGTCTC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	405, 1293
Eco88I	CYCGRG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	955, 995, 1204
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	4 cut(s)	272, 422, 659, 1237
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	4 cut(s)	268, 418, 655, 1233
FauI	CCCGC	1 cut(s)	1176
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	603, 1167, 1324
FokI	GGATG	2 cut(s)	842, 887
Fsp4HI	GCNGC	3 cut(s)	603, 1167, 1324
FspBI	CTAG	6 cut(s)	134, 776, 927, 1065, 1074, 1179
GluI	GCNGC	3 cut(s)	603, 1167, 1324
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	243, 960, 1187, 1238
HapII	CCGG	4 cut(s)	156, 731, 1198, 1213
Hin1II	CATG	4 cut(s)	272, 422, 659, 1237
HincII	GTYRAC	2 cut(s)	283, 1279
HindII	GTYRAC	2 cut(s)	283, 1279
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	8 cut(s)	64, 71, 180, 545, 721, 727, 992, 1337
HpaII	CCGG	4 cut(s)	156, 731, 1198, 1213
HphI	GGTGA	2 cut(s)	158, 815
Hpy166II	GTNNAC	3 cut(s)	283, 653, 1279
Hpy188I	TCNGA	6 cut(s)	76, 108, 726, 979, 1225, 1273
Hpy188III	TCNNGA	9 cut(s)	68, 91, 497, 542, 549, 567, 749, 787, 847
Hpy8I	GTNNAC	3 cut(s)	283, 653, 1279
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	6 cut(s)	301, 314, 800, 1198, 1211, 1362
HpyCH4III	ACNGT	2 cut(s)	232, 1331
HpyCH4IV	ACGT	2 cut(s)	663, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 169, 772, 943
HpyF3I	CTNAG	4 cut(s)	395, 498, 1133, 1222
HpySE526I	ACGT	2 cut(s)	663, 825
Hsp92II	CATG	4 cut(s)	272, 422, 659, 1237
Kzo9I	GATC	4 cut(s)	482, 573, 745, 1423
LguI	GCTCTTC	1 cut(s)	1088
LmnI	GCTCC	2 cut(s)	49, 456
Lsp1109I	GCAGC	2 cut(s)	589, 1310
LweI	GCATC	2 cut(s)	262, 820
MaeI	CTAG	6 cut(s)	134, 776, 927, 1065, 1074, 1179
MaeII	ACGT	2 cut(s)	663, 825
MaeIII	GTNAC	3 cut(s)	226, 246, 703
MalI	GATC	4 cut(s)	484, 575, 747, 1425
MboI	GATC	4 cut(s)	482, 573, 745, 1423
MboII	GAAGA	6 cut(s)	227, 398, 876, 1105, 1153, 1404
MflI	RGATCY	2 cut(s)	482, 1423
MhlI	GDGCHC	1 cut(s)	1212
MlsI	TGGCCA	1 cut(s)	1238
MluCI	AATT	7 cut(s)	57, 129, 316, 637, 668, 699, 1315
MluNI	TGGCCA	1 cut(s)	1238
MlyI	GAGTC	1 cut(s)	1001
Mox20I	TGGCCA	1 cut(s)	1238
MscI	TGGCCA	1 cut(s)	1238
MseI	TTAA	3 cut(s)	188, 315, 1014
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	1238
MspA1I	CMGCKG	1 cut(s)	1323
MspI	CCGG	4 cut(s)	156, 731, 1198, 1213
MspR9I	CCNGG	4 cut(s)	957, 997, 1206, 1214
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	3 cut(s)	957, 997, 1206
MwoI	GCNNNNNNNGC	4 cut(s)	13, 169, 772, 943
NciI	CCSGG	1 cut(s)	1214
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	4 cut(s)	482, 573, 745, 1423
NheI	GCTAGC	1 cut(s)	1064
NlaIII	CATG	4 cut(s)	272, 422, 659, 1237
NlaIV	GGNNCC	3 cut(s)	452, 633, 1211
NmuCI	GTSAC	2 cut(s)	226, 703
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	565
PaqCI	CACCTGC	2 cut(s)	177, 476
PciSI	GCTCTTC	1 cut(s)	1088
PctI	GAATGC	1 cut(s)	986
PfeI	GAWTC	7 cut(s)	64, 71, 180, 545, 721, 727, 1337
PfoI	TCCNGGA	1 cut(s)	995
PkrI	GCNGC	3 cut(s)	604, 1168, 1325
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	3 cut(s)	955, 995, 1204
PspGI	CCWGG	3 cut(s)	955, 995, 1204
PspN4I	GGNNCC	3 cut(s)	452, 633, 1211
PspPI	GGNCC	2 cut(s)	632, 1185
PspPPI	RGGWCCY	1 cut(s)	632
PstNI	CAGNNNCTG	2 cut(s)	13, 623
PsuI	RGATCY	2 cut(s)	482, 1423
PvuII	CAGCTG	1 cut(s)	1323
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	1088
SaqAI	TTAA	3 cut(s)	188, 315, 1014
SatI	GCNGC	3 cut(s)	603, 1167, 1324
Sau3AI	GATC	4 cut(s)	482, 573, 745, 1423
Sau96I	GGNCC	2 cut(s)	632, 1185
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	4 cut(s)	957, 997, 1206, 1214
SduI	GDGCHC	1 cut(s)	1212
SfaNI	GCATC	2 cut(s)	262, 820
Sfr274I	CTCGAG	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	565, 1341
SmoI	CTYRAG	2 cut(s)	565, 1341
SpeI	ACTAGT	1 cut(s)	1073
Sse9I	AATT	7 cut(s)	57, 129, 316, 637, 668, 699, 1315
SsiI	CCGC	2 cut(s)	1166, 1183
SspMI	CTAG	6 cut(s)	134, 776, 927, 1065, 1074, 1179
StyD4I	CCNGG	4 cut(s)	955, 995, 1204, 1212
TaaI	ACNGT	2 cut(s)	232, 1331
TaiI	ACGT	2 cut(s)	666, 828
TaqI	TCGA	5 cut(s)	62, 566, 848, 911, 990
TasI	AATT	7 cut(s)	57, 129, 316, 637, 668, 699, 1315
TauI	GCSGC	1 cut(s)	1169
TfiI	GAWTC	7 cut(s)	64, 71, 180, 545, 721, 727, 1337
Tru1I	TTAA	3 cut(s)	188, 315, 1014
Tru9I	TTAA	3 cut(s)	188, 315, 1014
TscAI	CASTG	2 cut(s)	747, 1380
TseFI	GTSAC	2 cut(s)	226, 703
TseI	GCWGC	2 cut(s)	602, 1323
Tsp45I	GTSAC	2 cut(s)	226, 703
TspDTI	ATGAA	8 cut(s)	251, 283, 416, 729, 876, 1242, 1400, 1404
TspRI	CASTG	2 cut(s)	747, 1380
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	1315
XhoI	CTCGAG	1 cut(s)	565
XspI	CTAG	6 cut(s)	134, 776, 927, 1065, 1074, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.