AT2G19340

OST3 / OST6 family, transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011255
Physical Location & Seq
Reverse (-)
8373766 .. 8375955
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19340.2

Sequence Viewer

Length: 603 bp
ATGGCTCCAAGATCCGATTCGCAAACCGGCTCCAGTGTATCAGACGGTTCAGATCAATCCTCAATGGATCCAATATTCCACCTTCTCCGAATCGTCCCATTCTCATTTCTCCGACCACCGCGCCTCCGTCTGAAGATTCCATCGTTCACGCTTCCTTCTCCGATGACTGTATACGCTCTAATTCTCCTTACCTACTTTTTAGTAGTCTCCGGTTTCGTCTACGACGTAATTGTCGAGCCTCCGGGTATCGGATCAACTCAGGATCCGACTACTGGAACTATTCGACCCGTTGTGTTTATGTCGGGTCGGGTTAACGGGCAATATATCATTGAAGGTCTCTCTTCTGGATTCATGTTCGTTCTCGGTGGAATTGGGATTGTTATGCTTGATTTAGCGCTTGATAAGAACAAAGCCAAGAGTGTTAAAGCTTCTTATGCTGTTGCTGGTGTCTCCTCCATTGTGATCGCTTATGTCATGAGTTCTTGGAGAAAAGAGACGACGTGGAGAGAACATTCCAGAATACCTAGGCGAAGCAAGACTGTCGATGGAGCGGTACTCAGGCATGATGAACCCTTCTCTCTCCTCTCTATTCCAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

200

Amino Acids

21.84

Weight (kDa)

9.64

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 51 - 173 3e-12 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccBSI CCGCTC 1 cut(s) 551
AccI GTMKAC 2 cut(s) 171, 219
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 119, 551
AclWI GGATC 6 cut(s) 6, 62, 75, 257, 259, 270
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 555
AfeI AGCGCT 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 248, 272
AgsI TTSAA 1 cut(s) 332
AjiI CACGTC 1 cut(s) 501
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 428, 596
AluI AGCT 2 cut(s) 428, 596
Alw26I GTCTC 4 cut(s) 211, 341, 454, 488
AlwI GGATC 6 cut(s) 6, 62, 75, 257, 259, 270
Aor51HI AGCGCT 1 cut(s) 396
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 2 cut(s) 123, 397
AsuC2I CCSGG 1 cut(s) 243
AvrII CCTAGG 1 cut(s) 524
BamHI GGATCC 2 cut(s) 67, 262
BccI CCATC 2 cut(s) 148, 539
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 4 cut(s) 211, 341, 454, 488
BfaI CTAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 398
BlnI CCTAGG 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 243
BmgBI CACGTC 1 cut(s) 501
BmiI GGNNCC 4 cut(s) 6, 31, 69, 264
BmrFI CCNGG 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 540, 572
BpmI CTGGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 524
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 272
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 33, 277
BseDI CCNNGG 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 248, 272
BseMII CTCAG 2 cut(s) 272, 571
BseNI ACTGG 2 cut(s) 33, 277
BseRI GAGGAG 2 cut(s) 442, 572
Bsh1236I CGCG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 27, 210, 242
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 248, 272
BsmAI GTCTC 4 cut(s) 211, 341, 454, 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 341
Bsp143I GATC 6 cut(s) 11, 52, 67, 251, 262, 462
BspACI CCGC 2 cut(s) 119, 551
BspCNI CTCAG 2 cut(s) 271, 570
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 6, 31, 69, 264
BspPI GGATC 6 cut(s) 6, 62, 75, 257, 259, 270
BspTNI GGTCTC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 33, 277
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 524
BssMI GATC 6 cut(s) 11, 52, 67, 251, 262, 462
BssNAI GTATAC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 524
Bst1107I GTATAC 1 cut(s) 172
Bst4CI ACNGT 3 cut(s) 47, 169, 541
Bst6I CTCTTC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 258, 557
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 123, 397
BstKTI GATC 6 cut(s) 14, 55, 70, 254, 265, 465
BstMAI GTCTC 4 cut(s) 211, 341, 454, 488
BstMBI GATC 6 cut(s) 11, 52, 67, 251, 262, 462
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 241
BstUI CGCG 1 cut(s) 121
BstX2I RGATCY 3 cut(s) 11, 67, 262
BstYI RGATCY 3 cut(s) 11, 67, 262
BstZ17I GTATAC 1 cut(s) 172
BtrI CACGTC 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 40
CciI TCATGA 1 cut(s) 474
CfoI GCGC 2 cut(s) 123, 397
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 1 cut(s) 554
CviAII CATG 3 cut(s) 352, 475, 563
CviJI RGCY 6 cut(s) 5, 30, 238, 413, 428, 596
CviKI_1 RGCY 6 cut(s) 5, 30, 238, 413, 428, 596
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 2 cut(s) 258, 557
DpnI GATC 6 cut(s) 13, 54, 69, 253, 264, 464
DpnII GATC 6 cut(s) 11, 52, 67, 251, 262, 462
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 341
Eco47III AGCGCT 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 3 cut(s) 355, 478, 566
FaiI YATR 9 cut(s) 172, 299, 324, 353, 383, 435, 471, 476, 564
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 351, 474, 562
FblI GTMKAC 2 cut(s) 171, 219
FspBI CTAG 1 cut(s) 525
GlaI GCGC 2 cut(s) 122, 396
GsuI CTGGAG 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 398
HapII CCGG 3 cut(s) 27, 210, 242
HhaI GCGC 2 cut(s) 123, 397
Hin1II CATG 3 cut(s) 355, 478, 566
Hin6I GCGC 2 cut(s) 121, 395
HinP1I GCGC 2 cut(s) 121, 395
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 17, 90, 136, 348
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 3 cut(s) 27, 210, 242
Hpy166II GTNNAC 4 cut(s) 147, 172, 220, 313
Hpy188I TCNGA 9 cut(s) 16, 43, 52, 89, 113, 132, 162, 251, 267
Hpy188III TCNNGA 5 cut(s) 260, 345, 475, 516, 600
Hpy8I GTNNAC 4 cut(s) 147, 172, 220, 313
Hpy99I CGWCG 2 cut(s) 227, 502
HpyAV CCTTC 4 cut(s) 92, 165, 326, 583
HpyCH4III ACNGT 3 cut(s) 47, 169, 541
HpyCH4IV ACGT 2 cut(s) 225, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 2 cut(s) 258, 557
HpySE526I ACGT 2 cut(s) 225, 500
Hsp92II CATG 3 cut(s) 355, 478, 566
HspAI GCGC 2 cut(s) 121, 395
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 6 cut(s) 11, 52, 67, 251, 262, 462
LmnI GCTCC 3 cut(s) 10, 35, 548
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 225, 500
MalI GATC 6 cut(s) 13, 54, 69, 253, 264, 464
MbiI CCGCTC 1 cut(s) 551
MboI GATC 6 cut(s) 11, 52, 67, 251, 262, 462
MboII GAAGA 2 cut(s) 145, 333
MflI RGATCY 3 cut(s) 11, 67, 262
MluCI AATT 3 cut(s) 180, 228, 369
MmeI TCCRAC 2 cut(s) 136, 290
MnlI CCTC 5 cut(s) 70, 134, 249, 463, 593
MseI TTAA 2 cut(s) 312, 423
MspI CCGG 3 cut(s) 27, 210, 242
MspR9I CCNGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 434
NciI CCSGG 1 cut(s) 243
NdeII GATC 6 cut(s) 11, 52, 67, 251, 262, 462
NlaIII CATG 3 cut(s) 355, 478, 566
NlaIV GGNNCC 4 cut(s) 6, 31, 69, 264
PagI TCATGA 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 231
PfeI GAWTC 4 cut(s) 17, 90, 136, 348
PspN4I GGNNCC 4 cut(s) 6, 31, 69, 264
PsuI RGATCY 3 cut(s) 11, 67, 262
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
SaqAI TTAA 2 cut(s) 312, 423
Sau3AI GATC 6 cut(s) 11, 52, 67, 251, 262, 462
ScrFI CCNGG 1 cut(s) 243
SetI ASST 8 cut(s) 84, 194, 228, 337, 430, 503, 526, 598
Sse9I AATT 3 cut(s) 180, 228, 369
SsiI CCGC 2 cut(s) 119, 551
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 47, 169, 541
TaiI ACGT 2 cut(s) 228, 503
TaqI TCGA 3 cut(s) 234, 283, 543
TasI AATT 3 cut(s) 180, 228, 369
TfiI GAWTC 4 cut(s) 17, 90, 136, 348
Tru1I TTAA 2 cut(s) 312, 423
Tru9I TTAA 2 cut(s) 312, 423
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 340, 582
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 40
XmaJI CCTAGG 1 cut(s) 524
XmiI GTMKAC 2 cut(s) 171, 219
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.