Rh4AG089500

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011255
Physical Location & Seq
Forward (+)
18722253 .. 18724665
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG089500.1

Sequence Viewer

Length: 624 bp
ATGCCGCCCAAATCCGAGTCGTTGCAGCCTGCCACCGGCACTACCCACTCCGACCATTCCTCCGGCTCCATCGACCCGATCGTCCACCTAATCCAGATCCTCCCCTACAGCTTCCTCCGACCTCCTCGCCTCCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCTCCCATGACCGTCTACGCCCTCGTCCTCCTCACCTACTTCATGGTCGTCTCCGGCTTCGTCTACGACGTCATCGTCGAGCCTCCGGGCATCGGGTCCACCCAGGACCACGTAACCGGGTCGGTCCGCCCCGTCGTGTTCCTCCCGGGCCGGGTCAACGGCCAGTACATAATCGAAGGGCTCTCTTCGGGCTTCATGTTCGTGCTTGGTGGCGTGGGGATTGTGCTGATGGATTTGGCCTTGGATCGCAATCGGGCTAAGAGCGTCAAGGTCTCGTACGCCACTGCTGGGATCTCTTCTGTTGTTCTTGCCTATGTTATGAGTATGCTCTTTATTCGCATCAAGATCCCTGCTTTTAAAGCAAAAAAGAAGAGTGGTGCAGTTCATTGCCCAGTACAGGATCAGATCAGTTATAAGATGGTTCAAACTACGTTGGTAGGTTCTGGTGTTTTTGCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

207

Amino Acids

22.32

Weight (kDa)

9.71

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 52 - 169 2.7e-08 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AasI GACNNNNNNGTC 2 cut(s) 80, 236
AatII GACGTC 1 cut(s) 234
AccI GTMKAC 2 cut(s) 177, 225
AciI CCGC 3 cut(s) 5, 133, 289
AclWI GGATC 5 cut(s) 91, 414, 461, 502, 570
AcoI YGGCCR 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 3 cut(s) 329, 440, 558
AfiI CCNNNNNNNGG 5 cut(s) 35, 254, 313, 450, 559
AgsI TTSAA 1 cut(s) 587
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 111, 142
AluI AGCT 2 cut(s) 111, 142
Alw26I GTCTC 2 cut(s) 217, 439
AlwI GGATC 5 cut(s) 91, 414, 461, 502, 570
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 3 cut(s) 310, 322, 399
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 258, 268, 286, 310
AsuC2I CCSGG 5 cut(s) 249, 280, 308, 309, 314
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 3 cut(s) 258, 268, 286
BanII GRGCYC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 37
BccI CCATC 3 cut(s) 77, 385, 574
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 5 cut(s) 249, 280, 308, 309, 314
BcoDI GTCTC 2 cut(s) 217, 439
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 2 cut(s) 5, 26
BlsI GCNGC 2 cut(s) 6, 27
Bme1390I CCNGG 6 cut(s) 249, 266, 280, 308, 309, 314
Bme18I GGWCC 3 cut(s) 258, 268, 286
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 4 cut(s) 258, 268, 286, 310
BmiI GGNNCC 2 cut(s) 67, 259
BmrFI CCNGG 6 cut(s) 249, 266, 280, 308, 309, 314
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 261, 510
BmuI ACTGGG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 5 cut(s) 249, 280, 308, 309, 314
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 264, 307, 402
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 254, 313, 450, 559
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 325, 554
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 264, 307, 402
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 5 cut(s) 35, 254, 313, 450, 559
BseMI GCAATG 1 cut(s) 547
BseNI ACTGG 2 cut(s) 325, 554
BseRI GAGGAG 2 cut(s) 114, 182
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 561
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 312, 324, 401
BsiEI CGRYCG 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 7 cut(s) 36, 63, 216, 248, 279, 308, 313
BsiWI CGTACG 1 cut(s) 438
BslI CCNNNNNNNGG 5 cut(s) 35, 254, 313, 450, 559
BsmAI GTCTC 2 cut(s) 217, 439
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 3 cut(s) 312, 324, 401
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
BspACI CCGC 3 cut(s) 5, 133, 289
BspANI GGCC 3 cut(s) 312, 324, 401
BspLI GGNNCC 2 cut(s) 67, 259
BspPI GGATC 5 cut(s) 91, 414, 461, 502, 570
BspTNI GGTCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 325, 554
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 264, 307, 402
BssMI GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 3 cut(s) 352, 463, 527
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 420
BstKTI GATC 7 cut(s) 81, 99, 409, 456, 510, 565, 570
BstMAI GTCTC 2 cut(s) 217, 439
BstMBI GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 6 cut(s) 247, 264, 278, 306, 307, 312
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 3 cut(s) 96, 453, 507
BstYI RGATCY 3 cut(s) 96, 453, 507
BsuRI GGCC 3 cut(s) 312, 324, 401
BtsI GCAGTG 2 cut(s) 444, 624
BtsIMutI CAGTG 2 cut(s) 444, 624
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 258, 268, 286, 310
Cfr9I CCCGGG 1 cut(s) 307
CpoI CGGWCCG 1 cut(s) 286
CseI GACGC 1 cut(s) 415
Csp6I GTAC 3 cut(s) 328, 439, 557
CspI CGGWCCG 1 cut(s) 286
CviAII CATG 3 cut(s) 169, 205, 358
CviQI GTAC 3 cut(s) 328, 439, 557
DdeI CTNAG 1 cut(s) 420
DpnI GATC 7 cut(s) 80, 98, 408, 455, 509, 564, 569
DpnII GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
DraI TTTAAA 1 cut(s) 520
DrdI GACNNNNNNGTC 2 cut(s) 80, 236
DseDI GACNNNNNNGTC 2 cut(s) 80, 236
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 352, 463, 527
EarI CTCTTC 3 cut(s) 352, 463, 527
EciI GGCGGA 2 cut(s) 122, 278
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 3 cut(s) 258, 268, 286
Eco88I CYCGRG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 3 cut(s) 172, 208, 361
FaiI YATR 8 cut(s) 170, 206, 332, 359, 477, 482, 488, 576
FatI CATG 3 cut(s) 168, 204, 357
FblI GTMKAC 2 cut(s) 177, 225
Fnu4HI GCNGC 2 cut(s) 5, 26
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 5, 26
GluI GCNGC 2 cut(s) 5, 26
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 3 cut(s) 312, 324, 401
HapII CCGG 7 cut(s) 36, 63, 216, 248, 279, 308, 313
HgaI GACGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 172, 208, 361
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 1 cut(s) 17
HpaII CCGG 7 cut(s) 36, 63, 216, 248, 279, 308, 313
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 5 cut(s) 85, 178, 226, 261, 319
Hpy188I TCNGA 4 cut(s) 16, 52, 119, 567
Hpy188III TCNNGA 2 cut(s) 94, 505
Hpy8I GTNNAC 5 cut(s) 85, 178, 226, 261, 319
Hpy99I CGWCG 3 cut(s) 233, 242, 299
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 3 cut(s) 231, 273, 593
HpyCH4V TGCA 3 cut(s) 25, 542, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 3 cut(s) 231, 273, 593
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 172, 208, 361
Kzo9I GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
LmnI GCTCC 2 cut(s) 71, 147
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 261, 510
MaeII ACGT 3 cut(s) 231, 273, 593
MaeIII GTNAC 1 cut(s) 274
MalI GATC 7 cut(s) 80, 98, 408, 455, 509, 564, 569
MboI GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
MboII GAAGA 3 cut(s) 339, 450, 544
MflI RGATCY 3 cut(s) 96, 453, 507
MhlI GDGCHC 1 cut(s) 345
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 75, 142
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 7 cut(s) 36, 63, 216, 248, 279, 308, 313
MspR9I CCNGG 6 cut(s) 249, 266, 280, 308, 309, 314
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 5 cut(s) 249, 280, 308, 309, 314
NdeII GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
NlaIII CATG 3 cut(s) 172, 208, 361
NlaIV GGNNCC 2 cut(s) 67, 259
PcsI WCGNNNNNNNCGW 4 cut(s) 78, 228, 234, 237
Pfl23II CGTACG 1 cut(s) 438
PkrI GCNGC 2 cut(s) 6, 27
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 274
PsiI TTATAA 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 264
PspLI CGTACG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 67, 259
PspPI GGNCC 4 cut(s) 258, 268, 286, 310
PsuI RGATCY 3 cut(s) 96, 453, 507
PvuI CGATCG 1 cut(s) 81
RsaI GTAC 3 cut(s) 329, 440, 558
RsaNI GTAC 3 cut(s) 328, 439, 557
RseI CAYNNNNRTG 1 cut(s) 362
Rsr2I CGGWCCG 1 cut(s) 286
RsrII CGGWCCG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 5, 26
Sau3AI GATC 7 cut(s) 78, 96, 406, 453, 507, 562, 567
Sau96I GGNCC 4 cut(s) 258, 268, 286, 310
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 6 cut(s) 249, 266, 280, 308, 309, 314
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 2 cut(s) 261, 510
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 3 cut(s) 258, 268, 286
SmaI CCCGGG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 3 cut(s) 5, 133, 289
StyD4I CCNGG 6 cut(s) 247, 264, 278, 306, 307, 312
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 3 cut(s) 234, 276, 596
TaqI TCGA 3 cut(s) 72, 240, 336
TaqII GACCGA 1 cut(s) 274
TatI WGTACW 2 cut(s) 327, 556
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 451, 624
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 193, 346, 536
TspMI CCCGGG 1 cut(s) 307
TspRI CASTG 2 cut(s) 451, 624
VpaK11BI GGWCC 3 cut(s) 258, 268, 286
XmaI CCCGGG 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 177, 225
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.