MD16G1244900.v1.1

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011255
Physical Location & Seq
Reverse (-)
26665998 .. 26666576
579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1244900.v1.1.491

Sequence Viewer

Length: 534 bp
ATGCCCCCGAAATCTGAGACCCAGCCTCCATCCACCGGCACCGGTACCACGCCCTCCGACGCATCCAACGCCTCAATCGACCCAATTCTCCTCGTCCTTCGAATCCTCCCCTACAGCTTCCTCCGCCCCCCTGGACTTCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCACCCATGACCGTCTACGCCCTCGTCCTCCTCACCTACTTCATGGTTGTCTCCGGCATCGTCTACGACGTCATCGTCGAGCCCCCGGGCATCGGATCAACTCAGGACCTCCTCACAGGGTCGGTCCGACCCGTTGTATTCCTCCCCGGCCGGGTCAACGGGCAGTACATAATTGAAGGGCTGTCGTCCGGGTTCATGTTCGTGGTTGGTGGGATCGGCATTGTGCTCATGGACTTGGCTCTGGATCGGAATCGGGCAAAAAGTGTGAAGGTGTCGTATGCCACAGCTGGGATCTCCTCTGTCGTTCTGGCATATGTTATGAGTATGCTGTTTATTCGTATCAAGATCCCAGGTTATCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

178

Amino Acids

18.98

Weight (kDa)

9.43

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 55 - 177 1.1e-09 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 240
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 2 cut(s) 38, 44
AccI GTMKAC 2 cut(s) 183, 231
AciI CCGC 1 cut(s) 124
AclWI GGATC 5 cut(s) 271, 389, 420, 467, 508
AcoI YGGCCR 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 46, 335
AfiI CCNNNNNNNGG 4 cut(s) 35, 260, 319, 456
AgeI ACCGGT 1 cut(s) 41
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 2 cut(s) 130, 517
AluBI AGCT 3 cut(s) 117, 148, 455
AluI AGCT 3 cut(s) 117, 148, 455
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 11, 223
AlwI GGATC 5 cut(s) 271, 389, 420, 467, 508
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 1 cut(s) 316
AsiGI ACCGGT 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 274, 292
AsuC2I CCSGG 5 cut(s) 254, 255, 315, 320, 358
AsuHPI GGTGA 2 cut(s) 162, 193
AsuII TTCGAA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 2 cut(s) 274, 292
BanI GGYRCC 2 cut(s) 38, 44
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 132, 519
BcnI CCSGG 5 cut(s) 254, 255, 315, 320, 358
BcoDI GTCTC 2 cut(s) 11, 223
BfmI CTRYAG 1 cut(s) 112
Bme1390I CCNGG 7 cut(s) 132, 254, 255, 315, 320, 358, 519
Bme18I GGWCC 2 cut(s) 274, 292
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 274, 292
BmiI GGNNCC 2 cut(s) 40, 46
BmrFI CCNGG 7 cut(s) 132, 254, 255, 315, 320, 358, 519
BmsI GCATC 3 cut(s) 71, 234, 267
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 5 cut(s) 254, 255, 315, 320, 358
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 130, 252, 253, 313, 517
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 260, 319, 456
Bse118I RCCGGY 2 cut(s) 35, 41
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 132, 519
BseDI CCNNGG 5 cut(s) 130, 252, 253, 313, 517
BseGI GGATG 2 cut(s) 29, 62
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 4 cut(s) 35, 260, 319, 456
BseMII CTCAG 2 cut(s) 6, 284
BseRI GAGGAG 4 cut(s) 80, 188, 269, 454
BseX3I CGGCCG 1 cut(s) 316
BseYI CCCAGC 2 cut(s) 21, 455
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 318
BshNI GGYRCC 2 cut(s) 38, 44
BshTI ACCGGT 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 7 cut(s) 36, 42, 222, 254, 315, 319, 357
BslI CCNNNNNNNGG 4 cut(s) 35, 260, 319, 456
BsmAI GTCTC 2 cut(s) 11, 223
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 252, 396
Bsp143I GATC 5 cut(s) 263, 381, 412, 459, 513
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 7, 283
BspLI GGNNCC 2 cut(s) 40, 46
BspPI GGATC 5 cut(s) 271, 389, 420, 467, 508
BspT104I TTCGAA 1 cut(s) 100
BspT107I GGYRCC 2 cut(s) 38, 44
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 35, 41
BssAI RCCGGY 2 cut(s) 35, 41
BssECI CCNNGG 5 cut(s) 130, 252, 253, 313, 517
BssMI GATC 5 cut(s) 263, 381, 412, 459, 513
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 132, 519
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 15, 270
BstF5I GGATG 2 cut(s) 29, 62
BstKTI GATC 5 cut(s) 266, 384, 415, 462, 516
BstMAI GTCTC 2 cut(s) 11, 223
BstMBI GATC 5 cut(s) 263, 381, 412, 459, 513
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 68, 123
BstNI CCWGG 2 cut(s) 132, 519
BstSCI CCNGG 7 cut(s) 130, 252, 253, 313, 318, 356, 517
BstSFI CTRYAG 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 459, 513
BstYI RGATCY 2 cut(s) 459, 513
BstZI CGGCCG 1 cut(s) 316
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 29, 62
Cfr10I RCCGGY 2 cut(s) 35, 41
Cfr13I GGNCC 2 cut(s) 274, 292
Cfr9I CCCGGG 1 cut(s) 253
CpoI CGGWCCG 1 cut(s) 292
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 45, 334
CspAI ACCGGT 1 cut(s) 41
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 4 cut(s) 175, 211, 364, 397
CviJI RGCY 8 cut(s) 25, 117, 148, 250, 318, 349, 407, 455
CviKI_1 RGCY 8 cut(s) 25, 117, 148, 250, 318, 349, 407, 455
CviQI GTAC 2 cut(s) 45, 334
DdeI CTNAG 2 cut(s) 15, 270
DpnI GATC 5 cut(s) 265, 383, 414, 461, 515
DpnII GATC 5 cut(s) 263, 381, 412, 459, 513
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 316
EagI CGGCCG 1 cut(s) 316
EciI GGCGGA 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 274, 292
Eco52I CGGCCG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 130, 517
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 4 cut(s) 178, 214, 367, 400
FatI CATG 4 cut(s) 174, 210, 363, 396
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 2 cut(s) 183, 231
FokI GGATG 2 cut(s) 16, 49
FriOI GRGCYC 1 cut(s) 252
GsaI CCCAGC 2 cut(s) 25, 459
HaeIII GGCC 1 cut(s) 318
HapII CCGG 7 cut(s) 36, 42, 222, 254, 315, 319, 357
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 4 cut(s) 178, 214, 367, 400
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 102, 418
HpaII CCGG 7 cut(s) 36, 42, 222, 254, 315, 319, 357
HphI GGTGA 2 cut(s) 162, 193
Hpy166II GTNNAC 3 cut(s) 184, 232, 325
Hpy188I TCNGA 5 cut(s) 16, 58, 263, 296, 417
Hpy188III TCNNGA 3 cut(s) 272, 410, 511
Hpy8I GTNNAC 3 cut(s) 184, 232, 325
Hpy99I CGWCG 3 cut(s) 62, 239, 248
HpyAV CCTTC 3 cut(s) 107, 338, 430
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 123
HpyF3I CTNAG 2 cut(s) 15, 270
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 4 cut(s) 178, 214, 367, 400
KpnI GGTACC 1 cut(s) 48
Kzo9I GATC 5 cut(s) 263, 381, 412, 459, 513
LmnI GCTCC 1 cut(s) 153
LweI GCATC 3 cut(s) 71, 234, 267
MaeII ACGT 1 cut(s) 237
MalI GATC 5 cut(s) 265, 383, 414, 461, 515
MboI GATC 5 cut(s) 263, 381, 412, 459, 513
MflI RGATCY 2 cut(s) 459, 513
MhlI GDGCHC 2 cut(s) 252, 396
MluCI AATT 2 cut(s) 84, 339
MmeI TCCRAC 3 cut(s) 81, 90, 319
MseI TTAA 1 cut(s) 532
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 7 cut(s) 36, 42, 222, 254, 315, 319, 357
MspR9I CCNGG 7 cut(s) 132, 254, 255, 315, 320, 358, 519
MvaI CCWGG 2 cut(s) 132, 519
MwoI GCNNNNNNNGC 2 cut(s) 68, 123
NciI CCSGG 5 cut(s) 254, 255, 315, 320, 358
NdeI CATATG 1 cut(s) 481
NdeII GATC 5 cut(s) 263, 381, 412, 459, 513
NlaIII CATG 4 cut(s) 178, 214, 367, 400
NlaIV GGNNCC 2 cut(s) 40, 46
NspV TTCGAA 1 cut(s) 100
PcsI WCGNNNNNNNCGW 4 cut(s) 75, 234, 240, 243
PfeI GAWTC 2 cut(s) 102, 418
PinAI ACCGGT 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 130, 517
PspFI CCCAGC 2 cut(s) 21, 455
PspGI CCWGG 2 cut(s) 130, 517
PspN4I GGNNCC 2 cut(s) 40, 46
PspPI GGNCC 2 cut(s) 274, 292
PspPPI RGGWCCY 1 cut(s) 274
PsuI RGATCY 2 cut(s) 459, 513
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 46, 335
RsaNI GTAC 2 cut(s) 45, 334
RseI CAYNNNNRTG 1 cut(s) 368
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 532
Sau3AI GATC 5 cut(s) 263, 381, 412, 459, 513
Sau96I GGNCC 2 cut(s) 274, 292
ScrFI CCNGG 7 cut(s) 132, 254, 255, 315, 320, 358, 519
SduI GDGCHC 2 cut(s) 252, 396
SetI ASST 8 cut(s) 119, 150, 206, 240, 279, 441, 457, 523
SfaNI GCATC 3 cut(s) 71, 234, 267
SfcI CTRYAG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 100
SinI GGWCC 2 cut(s) 274, 292
SmaI CCCGGG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 84, 339
SsiI CCGC 1 cut(s) 124
StyD4I CCNGG 7 cut(s) 130, 252, 253, 313, 318, 356, 517
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 78, 100, 246
TaqII GACCGA 1 cut(s) 280
TasI AATT 2 cut(s) 84, 339
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 2 cut(s) 102, 418
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 199, 352
TspMI CCCGGG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 274, 292
XmaI CCCGGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 183, 231
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.