AT4G29870

OST3 / OST6 family, transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011255
Physical Location & Seq
Forward (+)
14606000 .. 14606668
669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29870.1

Sequence Viewer

Length: 519 bp
ATGGCTCCGAGATCAGATTCACAAACCCTAGCCACCGGCTCCGACGAAAATGAATCCTCAATCGATCCGATCTTCCACATTCTCCGTATCATCCCTTTCTCCTTCCTCCGACCACCACGTCTTCGTCTCAAGCTCCCTTCCTTCACTCTCCCATCTCCAATGACTGTCTTCTCACTGATTCTCCTCACTTACTTCCTCGTCGTCTCCGGTTTCGTCTACGACGTGATTGTCGAGCCTCCAGGTATCGGATCGACACAGGATCCAATCACCGGGTCAGTAAGACCCGTCGTGTTTATGTCGGGTCGGGTCAATGGTCAATACATCATTGAAGGTCTTTCTTCCGGATTCATGTTCGTACTCGGTGGGATTGGAATCATAATGTTGGATCTGGCATTGGATAAGAATCGAGCTAAGAGTGTTAAAGCATCTTATGCAACAGCTGGAGTCTCCTCCATTGTGATTGCTTATGTTATGAGTATGCTCTTCATTCGCATTAAGATCCCTGGTTATCTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

172

Amino Acids

18.78

Weight (kDa)

9.57

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 50 - 170 1.2e-10 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 117, 227
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 341
AclWI GGATC 6 cut(s) 59, 254, 256, 267, 393, 493
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 245, 269
AgsI TTSAA 1 cut(s) 329
AjiI CACGTC 2 cut(s) 119, 223
AjnI CCWGG 2 cut(s) 238, 502
AluBI AGCT 3 cut(s) 133, 410, 440
AluI AGCT 3 cut(s) 133, 410, 440
Alw26I GTCTC 3 cut(s) 131, 208, 451
AlwI GGATC 6 cut(s) 59, 254, 256, 267, 393, 493
Aor13HI TCCGGA 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 259
BamHI GGATCC 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 113, 160
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 240, 504
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 131, 208, 451
BfaI CTAG 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 240, 271, 504
BmgBI CACGTC 2 cut(s) 119, 223
BmiI GGNNCC 3 cut(s) 6, 40, 261
BmrFI CCNGG 3 cut(s) 240, 271, 504
BmsI GCATC 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 113, 160
BpmI CTGGAG 2 cut(s) 222, 462
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 63
BsaBI GATNNNNATC 2 cut(s) 371, 402
BsaJI CCNNGG 1 cut(s) 502
BsaWI WCCGGW 2 cut(s) 206, 341
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 269
Bse118I RCCGGY 1 cut(s) 35
Bse8I GATNNNNATC 2 cut(s) 371, 402
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 240, 504
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 2 cut(s) 371, 402
BseLI CCNNNNNNNGG 2 cut(s) 245, 269
BseRI GAGGAG 2 cut(s) 173, 439
BshVI ATCGAT 1 cut(s) 63
BsiSI CCGG 4 cut(s) 36, 207, 270, 342
BslI CCNNNNNNNGG 2 cut(s) 245, 269
BsmAI GTCTC 3 cut(s) 131, 208, 451
BsmBI CGTCTC 2 cut(s) 131, 208
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
BspDI ATCGAT 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 341
BspLI GGNNCC 3 cut(s) 6, 40, 261
BspPI GGATC 6 cut(s) 59, 254, 256, 267, 393, 493
BspQI GCTCTTC 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
Bst2UI CCWGG 2 cut(s) 240, 504
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 7 cut(s) 14, 67, 72, 251, 262, 388, 501
BstMAI GTCTC 3 cut(s) 131, 208, 451
BstMBI GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 2 cut(s) 240, 504
BstSCI CCNGG 3 cut(s) 238, 269, 502
BstV2I GAAGAC 2 cut(s) 113, 160
BstX2I RGATCY 3 cut(s) 259, 385, 498
BstYI RGATCY 3 cut(s) 259, 385, 498
Bsu15I ATCGAT 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 63
BtrI CACGTC 2 cut(s) 119, 223
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 35
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 349
CviJI RGCY 7 cut(s) 5, 32, 39, 133, 235, 410, 440
CviKI_1 RGCY 7 cut(s) 5, 32, 39, 133, 235, 410, 440
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 1 cut(s) 411
DpnI GATC 7 cut(s) 13, 66, 71, 250, 261, 387, 500
DpnII GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
DrdI GACNNNNNNGTC 2 cut(s) 117, 227
DseDI GACNNNNNNGTC 2 cut(s) 117, 227
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 238, 502
Esp3I CGTCTC 2 cut(s) 131, 208
FaeI CATG 1 cut(s) 352
FaiI YATR 7 cut(s) 296, 350, 377, 432, 468, 473, 479
FatI CATG 1 cut(s) 348
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 77
FspBI CTAG 1 cut(s) 29
GsuI CTGGAG 2 cut(s) 222, 462
HapII CCGG 4 cut(s) 36, 207, 270, 342
Hin1II CATG 1 cut(s) 352
HinfI GANTC 7 cut(s) 17, 53, 178, 345, 372, 403, 444
HpaII CCGG 4 cut(s) 36, 207, 270, 342
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 6 cut(s) 9, 16, 43, 69, 110, 248
Hpy188III TCNNGA 1 cut(s) 342
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 4 cut(s) 47, 203, 224, 290
HpyAV CCTTC 4 cut(s) 112, 147, 151, 323
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 118, 222
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 2 cut(s) 118, 222
Hsp92II CATG 1 cut(s) 352
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 3 cut(s) 10, 44, 138
LweI GCATC 1 cut(s) 434
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 118, 222
MalI GATC 7 cut(s) 13, 66, 71, 250, 261, 387, 500
MboI GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
MboII GAAGA 5 cut(s) 64, 113, 160, 330, 475
MflI RGATCY 3 cut(s) 259, 385, 498
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 3 cut(s) 66, 133, 363
MnlI CCTC 6 cut(s) 67, 116, 194, 206, 246, 460
MroI TCCGGA 1 cut(s) 341
MseI TTAA 2 cut(s) 420, 495
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 4 cut(s) 36, 207, 270, 342
MspR9I CCNGG 3 cut(s) 240, 271, 504
MvaI CCWGG 2 cut(s) 240, 504
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 1 cut(s) 271
NdeII GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 3 cut(s) 6, 40, 261
PciSI GCTCTTC 1 cut(s) 488
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 228
PfeI GAWTC 6 cut(s) 17, 53, 178, 345, 372, 403
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 238, 502
PspGI CCWGG 2 cut(s) 238, 502
PspN4I GGNNCC 3 cut(s) 6, 40, 261
PsuI RGATCY 3 cut(s) 259, 385, 498
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 420, 495
Sau3AI GATC 7 cut(s) 11, 64, 69, 248, 259, 385, 498
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 3 cut(s) 240, 271, 504
SetI ASST 7 cut(s) 121, 135, 225, 244, 334, 412, 442
SfaNI GCATC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 238, 269, 502
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 121, 225
TaqI TCGA 4 cut(s) 63, 231, 251, 406
TfiI GAWTC 6 cut(s) 17, 53, 178, 345, 372, 403
Tru1I TTAA 2 cut(s) 420, 495
Tru9I TTAA 2 cut(s) 420, 495
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 3 cut(s) 66, 337, 475
TspGWI ACGGA 2 cut(s) 74, 503
TspRI CASTG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.