RLG00000009320

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011255
Physical Location & Seq
Reverse (-)
50983000 .. 50983916
917 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009320

Sequence Viewer

Length: 528 bp
ATGCCGCCCAAATCCGAGTCGTTGCAGCCGGCCACCGCCACAACCCACTCCGACCATTCCTCCGGCTCCATCGACCCGATCGTCCACCTAATCCAGATCCTCCCCTACAGCTTCCTCCGACCTCCTCGCCTCCGCCTCAAGCTCCCAACCCTAACCCTTCCCTCTCCCATGACCGTCGACGCCCTCGTTCTCCTCACCTACTTCATGGTCGTGTCCGGCTTCGTCTACGACGTCATCGTCGAGCCTCCGGGCATCGGGTCCACCCAGGACCACGTAACCGGGTCGGTCCGCCCAGTGGTGTTCCTCCCGGGCCGGGTCAACGGCCAGTACATAATCGAAGGGCTCTCTTCGGGCTTCATGTTCGTGCTTGGTGGCGTGGGGATTGTGCTGATGGATTTGGCCTTGGATCGCAATCGGGCTAAGAGCGTCAAGGTCTCGTACGCCACTGCTGGGATCTCTTCTGTTGTTCTTGCCTATGTTATGAGTATGCTCTTTATTCGCATCAAGATCCCTGGTTATCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

176

Amino Acids

18.95

Weight (kDa)

9.3

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 53 - 173 4.8e-09 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 236
AatII GACGTC 1 cut(s) 234
AccI GTMKAC 2 cut(s) 177, 225
AciI CCGC 4 cut(s) 5, 36, 133, 289
AclWI GGATC 4 cut(s) 91, 414, 461, 502
AcoI YGGCCR 2 cut(s) 30, 322
AcyI GRCGYC 2 cut(s) 180, 231
AfaI GTAC 2 cut(s) 329, 440
AfiI CCNNNNNNNGG 4 cut(s) 254, 295, 313, 450
AjnI CCWGG 2 cut(s) 264, 511
AluBI AGCT 2 cut(s) 111, 142
AluI AGCT 2 cut(s) 111, 142
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 4 cut(s) 91, 414, 461, 502
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 4 cut(s) 30, 310, 322, 399
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 258, 268, 286, 310
AsuC2I CCSGG 5 cut(s) 249, 280, 308, 309, 314
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 3 cut(s) 258, 268, 286
BanII GRGCYC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 77, 385
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 266, 513
BcnI CCSGG 5 cut(s) 249, 280, 308, 309, 314
BcoDI GTCTC 1 cut(s) 439
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 2 cut(s) 5, 26
BlsI GCNGC 2 cut(s) 6, 27
Bme1390I CCNGG 7 cut(s) 249, 266, 280, 308, 309, 314, 513
Bme18I GGWCC 3 cut(s) 258, 268, 286
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 4 cut(s) 258, 268, 286, 310
BmiI GGNNCC 2 cut(s) 67, 259
BmrFI CCNGG 7 cut(s) 249, 266, 280, 308, 309, 314, 513
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 261, 510
BmuI ACTGGG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 5 cut(s) 249, 280, 308, 309, 314
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 180, 231
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 4 cut(s) 264, 307, 402, 511
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 295, 313, 450
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 293, 325
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 266, 513
BseDI CCNNGG 4 cut(s) 264, 307, 402, 511
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 4 cut(s) 254, 295, 313, 450
BseNI ACTGG 2 cut(s) 293, 325
BseRI GAGGAG 2 cut(s) 114, 182
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 32, 312, 324, 401
BsiEI CGRYCG 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 7 cut(s) 29, 63, 216, 248, 279, 308, 313
BsiWI CGTACG 1 cut(s) 438
BslI CCNNNNNNNGG 4 cut(s) 254, 295, 313, 450
BsmAI GTCTC 1 cut(s) 439
BsnI GGCC 4 cut(s) 32, 312, 324, 401
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 5 cut(s) 78, 96, 406, 453, 507
BspACI CCGC 4 cut(s) 5, 36, 133, 289
BspANI GGCC 4 cut(s) 32, 312, 324, 401
BspLI GGNNCC 2 cut(s) 67, 259
BspPI GGATC 4 cut(s) 91, 414, 461, 502
BspTNI GGTCTC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 293, 325
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 264, 307, 402, 511
BssMI GATC 5 cut(s) 78, 96, 406, 453, 507
BssNI GRCGYC 2 cut(s) 180, 231
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 266, 513
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 352, 463
BstACI GRCGYC 2 cut(s) 180, 231
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 420
BstKTI GATC 5 cut(s) 81, 99, 409, 456, 510
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 5 cut(s) 78, 96, 406, 453, 507
BstMCI CGRYCG 1 cut(s) 81
BstNI CCWGG 2 cut(s) 266, 513
BstSCI CCNGG 7 cut(s) 247, 264, 278, 306, 307, 312, 511
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 3 cut(s) 96, 453, 507
BstYI RGATCY 3 cut(s) 96, 453, 507
BsuRI GGCC 4 cut(s) 32, 312, 324, 401
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 300, 444
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 258, 268, 286, 310
Cfr9I CCCGGG 1 cut(s) 307
CpoI CGGWCCG 1 cut(s) 286
CseI GACGC 2 cut(s) 188, 415
Csp6I GTAC 2 cut(s) 328, 439
CspI CGGWCCG 1 cut(s) 286
CviAII CATG 3 cut(s) 169, 205, 358
CviQI GTAC 2 cut(s) 328, 439
DdeI CTNAG 1 cut(s) 420
DpnI GATC 5 cut(s) 80, 98, 408, 455, 509
DpnII GATC 5 cut(s) 78, 96, 406, 453, 507
DrdI GACNNNNNNGTC 2 cut(s) 80, 236
DseDI GACNNNNNNGTC 2 cut(s) 80, 236
EaeI YGGCCR 2 cut(s) 30, 322
Eam1104I CTCTTC 2 cut(s) 352, 463
EarI CTCTTC 2 cut(s) 352, 463
EciI GGCGGA 2 cut(s) 122, 278
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 3 cut(s) 258, 268, 286
Eco88I CYCGRG 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 264, 511
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 3 cut(s) 172, 208, 361
FaiI YATR 7 cut(s) 170, 206, 332, 359, 477, 482, 488
FatI CATG 3 cut(s) 168, 204, 357
FblI GTMKAC 2 cut(s) 177, 225
Fnu4HI GCNGC 2 cut(s) 5, 26
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 5, 26
GluI GCNGC 2 cut(s) 5, 26
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 4 cut(s) 32, 312, 324, 401
HapII CCGG 7 cut(s) 29, 63, 216, 248, 279, 308, 313
HgaI GACGC 2 cut(s) 188, 415
Hin1I GRCGYC 2 cut(s) 180, 231
Hin1II CATG 3 cut(s) 172, 208, 361
HincII GTYRAC 2 cut(s) 178, 319
HindII GTYRAC 2 cut(s) 178, 319
HinfI GANTC 1 cut(s) 17
HpaII CCGG 7 cut(s) 29, 63, 216, 248, 279, 308, 313
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 5 cut(s) 85, 178, 226, 261, 319
Hpy188I TCNGA 3 cut(s) 16, 52, 119
Hpy188III TCNNGA 2 cut(s) 94, 505
Hpy8I GTNNAC 5 cut(s) 85, 178, 226, 261, 319
Hpy99I CGWCG 4 cut(s) 179, 182, 233, 242
HpyAV CCTTC 2 cut(s) 167, 332
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 231, 273
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 2 cut(s) 231, 273
Hsp92I GRCGYC 2 cut(s) 180, 231
Hsp92II CATG 3 cut(s) 172, 208, 361
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 78, 96, 406, 453, 507
LmnI GCTCC 2 cut(s) 71, 147
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 261, 510
MaeII ACGT 2 cut(s) 231, 273
MaeIII GTNAC 1 cut(s) 274
MalI GATC 5 cut(s) 80, 98, 408, 455, 509
MboI GATC 5 cut(s) 78, 96, 406, 453, 507
MboII GAAGA 3 cut(s) 339, 450, 512
MflI RGATCY 3 cut(s) 96, 453, 507
MhlI GDGCHC 1 cut(s) 345
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 75, 142
MroNI GCCGGC 1 cut(s) 28
MslI CAYNNNNRTG 2 cut(s) 209, 362
MspI CCGG 7 cut(s) 29, 63, 216, 248, 279, 308, 313
MspR9I CCNGG 7 cut(s) 249, 266, 280, 308, 309, 314, 513
MvaI CCWGG 2 cut(s) 266, 513
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 5 cut(s) 249, 280, 308, 309, 314
NdeII GATC 5 cut(s) 78, 96, 406, 453, 507
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 172, 208, 361
NlaIV GGNNCC 2 cut(s) 67, 259
PcsI WCGNNNNNNNCGW 5 cut(s) 78, 183, 228, 234, 237
PdiI GCCGGC 1 cut(s) 30
Pfl23II CGTACG 1 cut(s) 438
PkrI GCNGC 2 cut(s) 6, 27
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 264, 511
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 2 cut(s) 264, 511
PspLI CGTACG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 67, 259
PspPI GGNCC 4 cut(s) 258, 268, 286, 310
PsuI RGATCY 3 cut(s) 96, 453, 507
PvuI CGATCG 1 cut(s) 81
RsaI GTAC 2 cut(s) 329, 440
RsaNI GTAC 2 cut(s) 328, 439
RseI CAYNNNNRTG 2 cut(s) 209, 362
Rsr2I CGGWCCG 1 cut(s) 286
RsrII CGGWCCG 1 cut(s) 286
SalI GTCGAC 1 cut(s) 176
SatI GCNGC 2 cut(s) 5, 26
Sau3AI GATC 5 cut(s) 78, 96, 406, 453, 507
Sau96I GGNCC 4 cut(s) 258, 268, 286, 310
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 7 cut(s) 249, 266, 280, 308, 309, 314, 513
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 90, 113, 124, 144, 200, 234, 276, 435
SfaNI GCATC 2 cut(s) 261, 510
SfcI CTRYAG 1 cut(s) 106
SgrDI CGTCGACG 1 cut(s) 176
SinI GGWCC 3 cut(s) 258, 268, 286
SmaI CCCGGG 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 209, 362
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 4 cut(s) 5, 36, 133, 289
StyD4I CCNGG 7 cut(s) 247, 264, 278, 306, 307, 312, 511
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 234, 276
TaqI TCGA 4 cut(s) 72, 177, 240, 336
TaqII GACCGA 1 cut(s) 274
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 7
TscAI CASTG 2 cut(s) 300, 451
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 193, 346, 512
TspMI CCCGGG 1 cut(s) 307
TspRI CASTG 2 cut(s) 300, 451
VpaK11BI GGWCC 3 cut(s) 258, 268, 286
XmaI CCCGGG 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 177, 225
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.