MD16G1245000.v1.1

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011255
Physical Location & Seq
Forward (+)
26682657 .. 26683535
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1245000.v1.1.491

Sequence Viewer

Length: 531 bp
ATGCCCCCGAAATCTGAAACCCAGCCTCCATCCACCGCCATCACCACGCCCTCCGACCCATCTACCGCCTCCGTCGACCCAATTCTCCTCATCCTTCGGATCCTCCCCTACAGCTTCCTCCGCCCCCCTCGACTCCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCACCCATGACCGTCTACGCCCTCGTCCTCCTCACCTACTTCATGGTTGTCTCCGGCATCGTCTACGACGTCATCGTCGAGCCCCCGGGCATCGGATCAACTCAGGACCGCCTCACAGGGTCTATCCGACCCGTCGTCTTCCTCCCCGGCCGGGTCAACGGGCAGTACATAATCGAAGGGCTGTCGTCCGGGTTCATGTTCGTGCTTGGTGGGATCGGCATTGTGCTCATGGACTTGGCTCTGGATCGGAATCGGGCGAAAAGTGTGAAGGTGTCGTATGCCACTGCTGGGATCTCCTCTGTCGTTCTCGCCTATGTTATGAGTATGCTGTTTATTCGTATCAAGATCCCAGGTTATCTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

177

Amino Acids

19.13

Weight (kDa)

9.74

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 47 - 176 1.9e-10 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 237
AccI GTMKAC 3 cut(s) 75, 180, 228
AciI CCGC 5 cut(s) 36, 66, 121, 136, 274
AclWI GGATC 7 cut(s) 94, 107, 268, 386, 417, 464, 505
AcoI YGGCCR 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 3 cut(s) 257, 316, 453
AhdI GACNNNNNGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 2 cut(s) 114, 145
AluI AGCT 2 cut(s) 114, 145
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 7 cut(s) 94, 107, 268, 386, 417, 464, 505
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 5 cut(s) 251, 252, 312, 317, 355
AsuHPI GGTGA 3 cut(s) 34, 159, 190
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 393
BccI CCATC 3 cut(s) 37, 47, 67
BciT130I CCWGG 1 cut(s) 516
BcnI CCSGG 5 cut(s) 251, 252, 312, 317, 355
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 109
Bme1390I CCNGG 6 cut(s) 251, 252, 312, 317, 355, 516
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 6 cut(s) 251, 252, 312, 317, 355, 516
BmsI GCATC 2 cut(s) 231, 264
BpiI GAAGAC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 5 cut(s) 251, 252, 312, 317, 355
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 249, 250, 310, 514
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 316, 453
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 4 cut(s) 249, 250, 310, 514
BseGI GGATG 2 cut(s) 29, 90
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 257, 316, 453
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 3 cut(s) 77, 185, 451
BseX3I CGGCCG 1 cut(s) 313
BseYI CCCAGC 2 cut(s) 21, 452
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 5 cut(s) 219, 251, 312, 316, 354
BslI CCNNNNNNNGG 3 cut(s) 257, 316, 453
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 249, 393
Bsp143I GATC 6 cut(s) 99, 260, 378, 409, 456, 510
BspACI CCGC 5 cut(s) 36, 66, 121, 136, 274
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 7 cut(s) 94, 107, 268, 386, 417, 464, 505
BssECI CCNNGG 4 cut(s) 249, 250, 310, 514
BssMI GATC 6 cut(s) 99, 260, 378, 409, 456, 510
BssNI GRCGYC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 29, 90
BstKTI GATC 6 cut(s) 102, 263, 381, 412, 459, 513
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 6 cut(s) 99, 260, 378, 409, 456, 510
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 6 cut(s) 249, 250, 310, 315, 353, 514
BstSFI CTRYAG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 99, 456, 510
BstYI RGATCY 3 cut(s) 99, 456, 510
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 29, 90
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 271
Cfr9I CCCGGG 1 cut(s) 250
Csp6I GTAC 1 cut(s) 331
CviAII CATG 4 cut(s) 172, 208, 361, 394
CviJI RGCY 7 cut(s) 25, 114, 145, 247, 315, 346, 404
CviKI_1 RGCY 7 cut(s) 25, 114, 145, 247, 315, 346, 404
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 267
DpnI GATC 6 cut(s) 101, 262, 380, 411, 458, 512
DpnII GATC 6 cut(s) 99, 260, 378, 409, 456, 510
DrdI GACNNNNNNGTC 1 cut(s) 239
DriI GACNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 313
EagI CGGCCG 1 cut(s) 313
Eam1105I GACNNNNNGTC 1 cut(s) 299
EciI GGCGGA 2 cut(s) 110, 125
EclXI CGGCCG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 271
Eco52I CGGCCG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 4 cut(s) 175, 211, 364, 397
FaiI YATR 9 cut(s) 173, 209, 335, 362, 395, 444, 480, 485, 491
FatI CATG 4 cut(s) 171, 207, 360, 393
FblI GTMKAC 3 cut(s) 75, 180, 228
FokI GGATG 2 cut(s) 16, 77
FriOI GRGCYC 1 cut(s) 249
GsaI CCCAGC 2 cut(s) 25, 456
HaeIII GGCC 1 cut(s) 315
HapII CCGG 5 cut(s) 219, 251, 312, 316, 354
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 175, 211, 364, 397
HincII GTYRAC 2 cut(s) 76, 322
HindII GTYRAC 2 cut(s) 76, 322
HinfI GANTC 2 cut(s) 132, 415
HpaII CCGG 5 cut(s) 219, 251, 312, 316, 354
HphI GGTGA 3 cut(s) 34, 159, 190
Hpy166II GTNNAC 4 cut(s) 76, 181, 229, 322
Hpy188I TCNGA 6 cut(s) 16, 55, 99, 260, 293, 414
Hpy188III TCNNGA 3 cut(s) 269, 407, 508
Hpy8I GTNNAC 4 cut(s) 76, 181, 229, 322
Hpy99I CGWCG 4 cut(s) 77, 236, 245, 302
HpyAV CCTTC 3 cut(s) 104, 335, 427
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 175, 211, 364, 397
Kzo9I GATC 6 cut(s) 99, 260, 378, 409, 456, 510
LmnI GCTCC 1 cut(s) 150
LweI GCATC 2 cut(s) 231, 264
MaeII ACGT 1 cut(s) 234
MalI GATC 6 cut(s) 101, 262, 380, 411, 458, 512
MboI GATC 6 cut(s) 99, 260, 378, 409, 456, 510
MboII GAAGA 1 cut(s) 295
MflI RGATCY 3 cut(s) 99, 456, 510
MhlI GDGCHC 2 cut(s) 249, 393
MluCI AATT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 2 cut(s) 78, 316
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 5 cut(s) 219, 251, 312, 316, 354
MspR9I CCNGG 6 cut(s) 251, 252, 312, 317, 355, 516
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 120
NciI CCSGG 5 cut(s) 251, 252, 312, 317, 355
NdeII GATC 6 cut(s) 99, 260, 378, 409, 456, 510
NlaIII CATG 4 cut(s) 175, 211, 364, 397
NlaIV GGNNCC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 237, 240
PfeI GAWTC 1 cut(s) 415
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 514
PspFI CCCAGC 2 cut(s) 21, 452
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 3 cut(s) 99, 456, 510
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 365
SalI GTCGAC 1 cut(s) 74
Sau3AI GATC 6 cut(s) 99, 260, 378, 409, 456, 510
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 6 cut(s) 251, 252, 312, 317, 355, 516
SduI GDGCHC 2 cut(s) 249, 393
SetI ASST 6 cut(s) 116, 147, 203, 237, 438, 520
SfaNI GCATC 2 cut(s) 231, 264
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 271
SmaI CCCGGG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 81
SsiI CCGC 5 cut(s) 36, 66, 121, 136, 274
StyD4I CCNGG 6 cut(s) 249, 250, 310, 315, 353, 514
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 75, 130, 243, 339
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 196, 349
TspGWI ACGGA 1 cut(s) 61
TspMI CCCGGG 1 cut(s) 250
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 250
XmiI GTMKAC 3 cut(s) 75, 180, 228
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.