FvH4_4g06900

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011255
Physical Location & Seq
Forward (+)
6232459 .. 6233271
813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06900.t1

Sequence Viewer

Length: 534 bp
ATGCCGCCGAAACCCGAGTCACTCCACCCGGGCACCGCCACTGCCACCGCCCACTCTGACCACTCTTCGGGCTCCATCGATCCAATCGTCCACCTACTCCAGATCCTCCCCTACAGCTTCCTCCGGCCTCCTCGCCTCCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCCCCCATGACCGTCTTCGCCCTCGTCCTCCTCACCTACTTCATGGTTGTCTCCGGCTTCGTTTACGACGTCATCGTCGAGCCCCCCGGCATCGGCTCCACCCAGGACCCCCGGACCGGGGCGGTCCGACCCGTCGTCTTCCTCCCGGGCCGGGTCAACGGGCAGTACATAATCGAAGGGCTCTCTTCGGGGTTCATGTTCGTGCTCGGCGGTGTCGGAATTGTGCTGATGGATCTGGCTTTGGATCGGAACCGGGCTAAGAGCGTGAAGGTCTCGTACGCCACTGCTGGGATCTCTTCGGTTGTTCTTGCCTACGTTATGAGTATGCTCTTTATTCGCATCAAGATCCCTGGTTATCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

178

Amino Acids

19.13

Weight (kDa)

9.69

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 54 - 175 1.3e-09 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 6 cut(s) 5, 36, 48, 139, 290, 378
AclWI GGATC 6 cut(s) 74, 97, 408, 420, 467, 508
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 335, 446
AfiI CCNNNNNNNGG 7 cut(s) 67, 260, 284, 285, 286, 319, 456
AhdI GACNNNNNGTC 1 cut(s) 302
AjnI CCWGG 2 cut(s) 270, 517
AluBI AGCT 2 cut(s) 117, 148
AluI AGCT 2 cut(s) 117, 148
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 223, 445
AlwI GGATC 6 cut(s) 74, 97, 408, 420, 467, 508
Ama87I CYCGRG 3 cut(s) 14, 28, 313
AoxI GGCC 2 cut(s) 125, 316
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 274, 282, 292, 316
AsuC2I CCSGG 9 cut(s) 29, 30, 255, 280, 286, 314, 315, 320, 422
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 3 cut(s) 14, 28, 313
AvaII GGWCC 3 cut(s) 274, 282, 292
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 3 cut(s) 74, 252, 351
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BbsI GAAGAC 2 cut(s) 175, 298
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 2 cut(s) 83, 391
BciT130I CCWGG 2 cut(s) 272, 519
BcnI CCSGG 9 cut(s) 29, 30, 255, 280, 286, 314, 315, 320, 422
BcoDI GTCTC 2 cut(s) 223, 445
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 3 cut(s) 274, 282, 292
BmeRI GACNNNNNGTC 1 cut(s) 302
BmeT110I CYCGRG 3 cut(s) 14, 28, 313
BmgT120I GGNCC 4 cut(s) 274, 282, 292, 316
BmiI GGNNCC 5 cut(s) 34, 73, 265, 276, 419
BmsI GCATC 2 cut(s) 267, 516
BpiI GAAGAC 2 cut(s) 175, 298
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 9 cut(s) 29, 30, 255, 280, 286, 314, 315, 320, 422
Bsa29I ATCGAT 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 7 cut(s) 28, 253, 270, 278, 285, 313, 517
Bsc4I CCNNNNNNNGG 7 cut(s) 67, 260, 284, 285, 286, 319, 456
BseBI CCWGG 2 cut(s) 272, 519
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 7 cut(s) 28, 253, 270, 278, 285, 313, 517
BseLI CCNNNNNNNGG 7 cut(s) 67, 260, 284, 285, 286, 319, 456
BseRI GAGGAG 2 cut(s) 120, 188
BseSI GKGCMC 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 2 cut(s) 127, 318
BshNI GGYRCC 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 3 cut(s) 14, 28, 313
BsiSI CCGG 9 cut(s) 29, 124, 222, 255, 280, 285, 314, 319, 421
BsiWI CGTACG 1 cut(s) 444
BslI CCNNNNNNNGG 7 cut(s) 67, 260, 284, 285, 286, 319, 456
BsmAI GTCTC 2 cut(s) 223, 445
BsnI GGCC 2 cut(s) 127, 318
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 3 cut(s) 14, 28, 313
Bsp1286I GDGCHC 5 cut(s) 35, 74, 252, 351, 375
Bsp143I GATC 6 cut(s) 79, 102, 400, 412, 459, 513
BspACI CCGC 6 cut(s) 5, 36, 48, 139, 290, 378
BspANI GGCC 2 cut(s) 127, 318
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 5 cut(s) 34, 73, 265, 276, 419
BspPI GGATC 6 cut(s) 74, 97, 408, 420, 467, 508
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 445
BssECI CCNNGG 7 cut(s) 28, 253, 270, 278, 285, 313, 517
BssMI GATC 6 cut(s) 79, 102, 400, 412, 459, 513
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 272, 519
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 3 cut(s) 70, 358, 469
BstACI GRCGYC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 426
BstKTI GATC 6 cut(s) 82, 105, 403, 415, 462, 516
BstMAI GTCTC 2 cut(s) 223, 445
BstMBI GATC 6 cut(s) 79, 102, 400, 412, 459, 513
BstNI CCWGG 2 cut(s) 272, 519
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 35
BstV2I GAAGAC 2 cut(s) 175, 298
BstX2I RGATCY 4 cut(s) 102, 400, 459, 513
BstYI RGATCY 4 cut(s) 102, 400, 459, 513
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 2 cut(s) 127, 318
BsuTUI ATCGAT 1 cut(s) 78
BtsI GCAGTG 2 cut(s) 39, 450
BtsIMutI CAGTG 2 cut(s) 39, 450
Cfr13I GGNCC 4 cut(s) 274, 282, 292, 316
Cfr9I CCCGGG 2 cut(s) 28, 313
ClaI ATCGAT 1 cut(s) 78
CpoI CGGWCCG 2 cut(s) 282, 292
Csp6I GTAC 2 cut(s) 334, 445
CspI CGGWCCG 2 cut(s) 282, 292
CviAII CATG 3 cut(s) 175, 211, 364
CviQI GTAC 2 cut(s) 334, 445
DdeI CTNAG 1 cut(s) 426
DpnI GATC 6 cut(s) 81, 104, 402, 414, 461, 515
DpnII GATC 6 cut(s) 79, 102, 400, 412, 459, 513
DrdI GACNNNNNNGTC 1 cut(s) 242
DriI GACNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 70, 358, 469
Eam1105I GACNNNNNGTC 1 cut(s) 302
EarI CTCTTC 3 cut(s) 70, 358, 469
EciI GGCGGA 1 cut(s) 128
Eco24I GRGCYC 3 cut(s) 74, 252, 351
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 3 cut(s) 274, 282, 292
Eco88I CYCGRG 3 cut(s) 14, 28, 313
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 270, 517
EcoT38I GRGCYC 3 cut(s) 74, 252, 351
FaeI CATG 3 cut(s) 178, 214, 367
FaiI YATR 6 cut(s) 176, 212, 338, 365, 488, 494
FatI CATG 3 cut(s) 174, 210, 363
Fnu4HI GCNGC 1 cut(s) 5
FriOI GRGCYC 3 cut(s) 74, 252, 351
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 127, 318
HapII CCGG 9 cut(s) 29, 124, 222, 255, 280, 285, 314, 319, 421
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 3 cut(s) 178, 214, 367
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 1 cut(s) 17
HpaII CCGG 9 cut(s) 29, 124, 222, 255, 280, 285, 314, 319, 421
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 91, 232, 325
Hpy188I TCNGA 4 cut(s) 58, 296, 386, 417
Hpy188III TCNNGA 2 cut(s) 100, 511
Hpy8I GTNNAC 3 cut(s) 91, 232, 325
Hpy99I CGWCG 3 cut(s) 239, 248, 305
HpyAV CCTTC 2 cut(s) 338, 430
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 237, 483
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 237, 483
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 3 cut(s) 178, 214, 367
Kzo9I GATC 6 cut(s) 79, 102, 400, 412, 459, 513
LmnI GCTCC 3 cut(s) 77, 153, 269
LweI GCATC 2 cut(s) 267, 516
MaeII ACGT 2 cut(s) 237, 483
MaeIII GTNAC 1 cut(s) 18
MalI GATC 6 cut(s) 81, 104, 402, 414, 461, 515
MboI GATC 6 cut(s) 79, 102, 400, 412, 459, 513
MboII GAAGA 6 cut(s) 57, 175, 298, 345, 456, 518
MflI RGATCY 4 cut(s) 102, 400, 459, 513
MhlI GDGCHC 5 cut(s) 35, 74, 252, 351, 375
MluCI AATT 1 cut(s) 387
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 319, 364
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 9 cut(s) 29, 124, 222, 255, 280, 285, 314, 319, 421
MvaI CCWGG 2 cut(s) 272, 519
NciI CCSGG 9 cut(s) 29, 30, 255, 280, 286, 314, 315, 320, 422
NdeII GATC 6 cut(s) 79, 102, 400, 412, 459, 513
NlaIII CATG 3 cut(s) 178, 214, 367
NlaIV GGNNCC 5 cut(s) 34, 73, 265, 276, 419
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 4 cut(s) 84, 234, 240, 243
Pfl23II CGTACG 1 cut(s) 444
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 270, 517
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 270, 517
PspLI CGTACG 1 cut(s) 444
PspN4I GGNNCC 5 cut(s) 34, 73, 265, 276, 419
PspPI GGNCC 4 cut(s) 274, 282, 292, 316
PspPPI RGGWCCY 1 cut(s) 274
PsuI RGATCY 4 cut(s) 102, 400, 459, 513
RsaI GTAC 2 cut(s) 335, 446
RsaNI GTAC 2 cut(s) 334, 445
RseI CAYNNNNRTG 1 cut(s) 368
Rsr2I CGGWCCG 2 cut(s) 282, 292
RsrII CGGWCCG 2 cut(s) 282, 292
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 6 cut(s) 79, 102, 400, 412, 459, 513
Sau96I GGNCC 4 cut(s) 274, 282, 292, 316
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 5 cut(s) 35, 74, 252, 351, 375
SetI ASST 7 cut(s) 96, 119, 150, 206, 240, 441, 486
SfaNI GCATC 2 cut(s) 267, 516
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 3 cut(s) 274, 282, 292
SmaI CCCGGG 2 cut(s) 30, 315
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 387
SsiI CCGC 6 cut(s) 5, 36, 48, 139, 290, 378
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 2 cut(s) 240, 486
TaqI TCGA 3 cut(s) 78, 246, 342
TasI AATT 1 cut(s) 387
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 7
TscAI CASTG 2 cut(s) 46, 457
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 199, 352, 518
TspMI CCCGGG 2 cut(s) 28, 313
TspRI CASTG 2 cut(s) 46, 457
VpaK11BI GGWCC 3 cut(s) 274, 282, 292
XmaI CCCGGG 2 cut(s) 28, 313
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.