Prupe.1G072000_v2.0.a1

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011255
Physical Location & Seq
Forward (+)
5107316 .. 5108145
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G072000.1

Sequence Viewer

Length: 534 bp
ATGCCCCCAAAATCCGAAACCCAGCCCCCAACCACCGCCACAACCACCACCCCCTACGACCCATCCTCCGCCTCCATCGACCCGCTTTTCCTCTTCATTCGGATCCTCCCCTACAGCTTCCTCCGCCCGCCTCGACTCCGACTCAAGCTCCCATCCCTCACCCTCCCCTCCCCCATGACCGTCTACGCCCTCGTTCTCCTCACCTACTTCATGGTCGTCTCCGGAATCATCTACGATGTCATTGTCGAGCCTCCAGGCATCGGATCTACCCAGGACCGCCTCACGGGTTCGGTCCGACCCGTCGTCTTCCTTCAGGGCCGGGTCAACGGGCAGTACATAATCGAGGGTCTGTCGTCCGGGTTCATGTTCGTGCTGGGTGGGATCGGCATTGTGCTGATGGACTTGGCCCTGGATCGAAACCGAGCCAAGAGTGTGAAAGTCTCGTATGCCACTGCAGGGATATCTTCGGTCGTTTTGGCCTATGTTATGAGTATGCTCTTTATTCGTATCAAGATCCCGGCTTATCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

178

Amino Acids

19.38

Weight (kDa)

9.74

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 221
AciI CCGC 6 cut(s) 36, 69, 83, 124, 128, 277
AclWI GGATC 6 cut(s) 97, 110, 271, 389, 420, 508
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 3 cut(s) 260, 283, 456
AhdI GACNNNNNGTC 1 cut(s) 302
AjnI CCWGG 3 cut(s) 253, 270, 408
AluBI AGCT 2 cut(s) 117, 148
AluI AGCT 2 cut(s) 117, 148
Alw26I GTCTC 2 cut(s) 223, 445
AlwI GGATC 6 cut(s) 97, 110, 271, 389, 420, 508
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 3 cut(s) 316, 405, 477
AspS9I GGNCC 4 cut(s) 274, 292, 316, 406
AsuC2I CCSGG 3 cut(s) 320, 358, 518
AsuHPI GGTGA 2 cut(s) 151, 193
AvaII GGWCC 2 cut(s) 274, 292
BamHI GGATCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 298
BccI CCATC 4 cut(s) 70, 83, 160, 391
BciT130I CCWGG 3 cut(s) 255, 272, 410
BcnI CCSGG 3 cut(s) 320, 358, 518
BcoDI GTCTC 2 cut(s) 223, 445
BfmI CTRYAG 2 cut(s) 112, 453
Bme1390I CCNGG 6 cut(s) 255, 272, 320, 358, 410, 518
Bme18I GGWCC 2 cut(s) 274, 292
BmeRI GACNNNNNGTC 1 cut(s) 302
BmgT120I GGNCC 4 cut(s) 274, 292, 316, 406
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 6 cut(s) 255, 272, 320, 358, 410, 518
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 3 cut(s) 320, 358, 518
BsaJI CCNNGG 2 cut(s) 270, 408
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 283, 456
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 3 cut(s) 255, 272, 410
BseDI CCNNGG 2 cut(s) 270, 408
BseGI GGATG 2 cut(s) 62, 152
BseLI CCNNNNNNNGG 3 cut(s) 260, 283, 456
BseRI GAGGAG 1 cut(s) 188
BseYI CCCAGC 2 cut(s) 21, 373
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 3 cut(s) 318, 407, 479
BsiEI CGRYCG 1 cut(s) 471
BsiSI CCGG 4 cut(s) 222, 319, 357, 518
BslI CCNNNNNNNGG 3 cut(s) 260, 283, 456
BsmAI GTCTC 2 cut(s) 223, 445
BsmBI CGTCTC 1 cut(s) 223
BsnI GGCC 3 cut(s) 318, 407, 479
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 5 cut(s) 102, 263, 381, 412, 513
BspACI CCGC 6 cut(s) 36, 69, 83, 124, 128, 277
BspANI GGCC 3 cut(s) 318, 407, 479
BspEI TCCGGA 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 6 cut(s) 97, 110, 271, 389, 420, 508
BssECI CCNNGG 2 cut(s) 270, 408
BssMI GATC 5 cut(s) 102, 263, 381, 412, 513
Bst2UI CCWGG 3 cut(s) 255, 272, 410
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 62, 152
BstKTI GATC 5 cut(s) 105, 266, 384, 415, 516
BstMAI GTCTC 2 cut(s) 223, 445
BstMBI GATC 5 cut(s) 102, 263, 381, 412, 513
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 3 cut(s) 255, 272, 410
BstSCI CCNGG 6 cut(s) 253, 270, 318, 356, 408, 516
BstSFI CTRYAG 2 cut(s) 112, 453
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 3 cut(s) 102, 263, 513
BstYI RGATCY 3 cut(s) 102, 263, 513
BsuRI GGCC 3 cut(s) 318, 407, 479
BtsCI GGATG 2 cut(s) 62, 152
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 274, 292, 316, 406
CpoI CGGWCCG 1 cut(s) 292
Csp6I GTAC 1 cut(s) 334
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 3 cut(s) 175, 211, 364
CviJI RGCY 9 cut(s) 25, 117, 148, 250, 318, 407, 425, 479, 521
CviKI_1 RGCY 9 cut(s) 25, 117, 148, 250, 318, 407, 425, 479, 521
CviQI GTAC 1 cut(s) 334
DpnI GATC 5 cut(s) 104, 265, 383, 414, 515
DpnII GATC 5 cut(s) 102, 263, 381, 412, 513
DriI GACNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 2 cut(s) 58, 113
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 274, 292
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 3 cut(s) 253, 270, 408
EcoRV GATATC 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 178, 214, 367
FaiI YATR 8 cut(s) 176, 212, 338, 365, 447, 483, 488, 494
FatI CATG 3 cut(s) 174, 210, 363
FauI CCCGC 2 cut(s) 90, 135
FblI GTMKAC 1 cut(s) 183
FokI GGATG 2 cut(s) 49, 139
GsaI CCCAGC 2 cut(s) 25, 377
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 3 cut(s) 318, 407, 479
HapII CCGG 4 cut(s) 222, 319, 357, 518
Hin1II CATG 3 cut(s) 178, 214, 367
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 3 cut(s) 135, 141, 225
HpaII CCGG 4 cut(s) 222, 319, 357, 518
HphI GGTGA 2 cut(s) 151, 193
Hpy166II GTNNAC 2 cut(s) 184, 325
Hpy188I TCNGA 5 cut(s) 16, 102, 140, 263, 296
Hpy188III TCNNGA 2 cut(s) 222, 511
Hpy8I GTNNAC 2 cut(s) 184, 325
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 178, 214, 367
Kpn2I TCCGGA 1 cut(s) 221
Kzo9I GATC 5 cut(s) 102, 263, 381, 412, 513
LmnI GCTCC 1 cut(s) 153
LweI GCATC 1 cut(s) 267
MalI GATC 5 cut(s) 104, 265, 383, 414, 515
MboI GATC 5 cut(s) 102, 263, 381, 412, 513
MboII GAAGA 4 cut(s) 85, 298, 456, 518
MflI RGATCY 3 cut(s) 102, 263, 513
MlyI GAGTC 2 cut(s) 129, 135
MmeI TCCRAC 2 cut(s) 163, 319
MroI TCCGGA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 4 cut(s) 222, 319, 357, 518
MspR9I CCNGG 6 cut(s) 255, 272, 320, 358, 410, 518
MvaI CCWGG 3 cut(s) 255, 272, 410
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 3 cut(s) 320, 358, 518
NdeII GATC 5 cut(s) 102, 263, 381, 412, 513
NlaIII CATG 3 cut(s) 178, 214, 367
NlaIV GGNNCC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 225
PleI GAGTC 2 cut(s) 129, 135
PpsI GAGTC 2 cut(s) 129, 135
Psp6I CCWGG 3 cut(s) 253, 270, 408
PspFI CCCAGC 2 cut(s) 21, 373
PspGI CCWGG 3 cut(s) 253, 270, 408
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 4 cut(s) 274, 292, 316, 406
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 102, 263, 513
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 368
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
Sau3AI GATC 5 cut(s) 102, 263, 381, 412, 513
Sau96I GGNCC 4 cut(s) 274, 292, 316, 406
SchI GAGTC 2 cut(s) 129, 135
ScrFI CCNGG 6 cut(s) 255, 272, 320, 358, 410, 518
SetI ASST 3 cut(s) 119, 150, 206
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 2 cut(s) 112, 453
SinI GGWCC 2 cut(s) 274, 292
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 6 cut(s) 36, 69, 83, 124, 128, 277
StyD4I CCNGG 6 cut(s) 253, 270, 318, 356, 408, 516
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 5 cut(s) 78, 133, 246, 342, 415
TaqII GACCGA 2 cut(s) 280, 457
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 225
TscAI CASTG 1 cut(s) 457
TspDTI ATGAA 4 cut(s) 85, 199, 352, 518
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 274, 292
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.