AT2G19900

malic enzyme

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8591808 .. 8595559
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19900.2

Sequence Viewer

Length: 1746 bp
ATGGAGAAAGTGACCAACTCAGACTTGAAATCCTCTGTTGATGGTGGCGTTGTTGATGTGTATGGAGAAGATTCAGCCACCATTGAGCACAACATAACTCCTTGGTCTCTCTCTGTTTCTAGTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGACTTGCTTTCACTGAGAAAGAGAGAGACACTCATTACTTGCGTGGTCTTCTCCCTCCAGTTGTTCTTGATCAAAAGCTTCAGGAGAAGAGGCTGTTGAACAATATCCGACAATATCAATTCCCATTACAAAAGTACATGGCTCTGACAGAACTTCAGGAAAGAAACGAGAGACTGTTTTACAAGCTATTGATAGATAATGTTGAGGAGCTACTTCCTATTGTTTATACTCCAACTGTTGGTGAAGCTTGTCAGAAATTTGGAAGTATTTTCAGGCGACCTCAGGGTTTATTCATCAGTTTAAAAGACAAGGGAAAGATTCTAGATGTGTTAAAGAACTGGCCTGAAAGGAACATACAGGTTATTGTTGTTACTGACGGTGAAAGGATTTTAGGATTAGGAGATCTTGGATGTCAGGGGATGGGTATACCGGTTGGTAAGTTGGCGTTATATTCAGCACTTGGAGGTGTTCGTCCTTCAGCGTGTTTACCTGTCACCATTGATGTGGGAACAAACAATGAGAAACTGTTGAATGATGAGTTCTACATAGGACTCAGGCAAAAGAGAGCAACGGGACAGGAATATAGTGAACTCTTGAATGAATTCATGAGTGCTGTGAAACAGAACTATGGTGAAAAAGTTCTTATTCAGTTTGAAGATTTTGCTAATCATAATGCCTTTGAGTTGCTTGCAAAATACAGCGATACTCATCTCGTCTTCAACGATGATATACAGGGGACAGCATCAGTTGTTTTAGCAGGATTAGTTTCCGCACAGAAGTTAACGAATAGCCCACTTGCAGAGCATACCTTCCTCTTTCTTGGTGCTGGTGAAGCTGGAACTGGAATAGCAGAACTCATAGCTCTCTATATGTCAAAACAGATGAATGCTTCGGTAGAGGAAAGCCGCAAGAAAATCTGGCTTGTTGATTCCAAGGGATTGATTGTTAACTCCCGCAAAGATTCACTTCAAGACTTTAAGAAACCATGGGCTCATGAACATGAACCAGTCAAAGACCTCTTAGGTGCTATCAAGGCAATAAAACCGACTGTTCTGATTGGATCTTCTGGCGTTGGACGGTCTTTTACAAAAGAAGTGATAGAAGCCATGTCCTCCATTAATGAGAGACCACTGATAATGGCTCTCTCTAACCCCACAACACAATCTGAATGTACAGCCGAAGAAGCTTATACTTGGAGTAAGGGCCGTGCCATTTTTGCTAGTGGAAGCCCTTTTGATCCAGTTGAGTATGAAGGAAAGGTGTTTGTATCTACACAGGCGAACAATGCGTACATATTCCCGGGCTTTGGACTTGGTTTGGTTATCTCTGGAGCAATACGGGTACATGACGATATGCTTCTAGCTGCTGCTGAGGCATTAGCTGGACAAGTAAGCAAAGAGAACTATGAGAAAGGAATGATATATCCTTCATTCTCTTCCATCCGGAAAATATCAGCTCAGATTGCAGCCAATGTAGCAACTAAGGCGTATGAACTAGGATTGGCAGGGCGGCTTCCACGGCCGAAAGATATTGTCAAATGTGCAGAGAGTAGCATGTACAGCCCCACATACCGTCTCTACCGTTGA

Protein Analysis

581

Amino Acids

64.28

Weight (kDa)

6.32

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
malic PF00390 7 - 187 2.2e-79 Malic enzyme, N-terminal domain
Malic_M PF03949 198 - 451 3e-98 Malic enzyme, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AccI GTMKAC 1 cut(s) 586
AccIII TCCGGA 1 cut(s) 1602
AciI CCGC 4 cut(s) 930, 1066, 1114, 1669
AclWI GGATC 3 cut(s) 137, 1228, 1391
AcoI YGGCCR 1 cut(s) 1679
AcsI RAATTY 2 cut(s) 416, 761
AcuI CTGAAG 3 cut(s) 224, 299, 621
AfaI GTAC 5 cut(s) 296, 1333, 1451, 1503, 1718
AfiI CCNNNNNNNGG 2 cut(s) 398, 1466
AgeI ACCGGT 1 cut(s) 589
AgsI TTSAA 7 cut(s) 28, 259, 691, 757, 815, 880, 1130
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 5 cut(s) 111, 180, 325, 1279, 1739
AlwI GGATC 3 cut(s) 137, 1228, 1391
Ama87I CYCGRG 1 cut(s) 1459
Aor13HI TCCGGA 1 cut(s) 1602
AoxI GGCC 3 cut(s) 500, 1363, 1679
ApeKI GCWGC 3 cut(s) 1523, 1526, 1625
ApoI RAATTY 2 cut(s) 416, 761
AseI ATTAAT 1 cut(s) 1278
AsiGI ACCGGT 1 cut(s) 589
Asp700I GAANNNNTTC 2 cut(s) 761, 798
AspS9I GGNCC 1 cut(s) 1363
AsuC2I CCSGG 2 cut(s) 1460, 1461
AsuHPI GGTGA 5 cut(s) 413, 551, 646, 803, 1001
AvaI CYCGRG 1 cut(s) 1459
AxyI CCTNAGG 1 cut(s) 441
BanII GRGCYC 1 cut(s) 1153
BbsI GAAGAC 2 cut(s) 200, 868
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 1530
BbvI GCAGC 3 cut(s) 1510, 1513, 1637
BccI CCATC 3 cut(s) 35, 574, 1607
BceAI ACGGC 2 cut(s) 1350, 1694
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 2 cut(s) 1460, 1461
BcoDI GTCTC 5 cut(s) 111, 180, 325, 1279, 1739
BfaI CTAG 5 cut(s) 120, 482, 1380, 1520, 1655
BglII AGATCT 1 cut(s) 562
BisI GCNGC 5 cut(s) 1066, 1524, 1527, 1626, 1670
BlsI GCNGC 5 cut(s) 1067, 1525, 1528, 1627, 1671
Bme1390I CCNGG 2 cut(s) 1460, 1461
BmeT110I CYCGRG 1 cut(s) 1459
BmgT120I GGNCC 1 cut(s) 1363
BmrFI CCNGG 2 cut(s) 1460, 1461
BmsI GCATC 1 cut(s) 911
BpiI GAAGAC 2 cut(s) 200, 868
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 175, 207
BpmI CTGGAG 2 cut(s) 201, 1509
Bpu10I CCTNAGC 1 cut(s) 1530
BpuMI CCSGG 2 cut(s) 1460, 1461
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 111, 1279
BsaJI CCNNGG 5 cut(s) 101, 1092, 1145, 1459, 1676
BsaWI WCCGGW 2 cut(s) 589, 1602
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 1466
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 5 cut(s) 218, 503, 1006, 1166, 1400
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 867
BseAI TCCGGA 1 cut(s) 1602
BseDI CCNNGG 5 cut(s) 101, 1092, 1145, 1459, 1676
BseGI GGATG 3 cut(s) 575, 585, 1599
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 398, 1466
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 7 cut(s) 33, 128, 165, 455, 727, 1521, 1631
BseNI ACTGG 5 cut(s) 218, 503, 1006, 1166, 1400
BseRI GAGGAG 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 1679
BseXI GCAGC 3 cut(s) 1510, 1513, 1637
BsgI GTGCAG 1 cut(s) 1722
Bsh1285I CGRYCG 1 cut(s) 1682
BshFI GGCC 3 cut(s) 502, 1365, 1681
BshTI ACCGGT 1 cut(s) 589
BsiEI CGRYCG 1 cut(s) 1682
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 1459
BsiSI CCGG 3 cut(s) 590, 1460, 1603
BslFI GGGAC 2 cut(s) 747, 910
BslI CCNNNNNNNGG 2 cut(s) 398, 1466
BsmAI GTCTC 5 cut(s) 111, 180, 325, 1279, 1739
BsmBI CGTCTC 1 cut(s) 1739
BsmFI GGGAC 2 cut(s) 747, 910
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 3 cut(s) 502, 1365, 1681
Bso31I GGTCTC 2 cut(s) 111, 1279
BsoBI CYCGRG 1 cut(s) 1459
Bsp1286I GDGCHC 2 cut(s) 90, 1153
Bsp13I TCCGGA 1 cut(s) 1602
Bsp1407I TGTACA 2 cut(s) 1331, 1716
Bsp143I GATC 5 cut(s) 142, 229, 562, 1220, 1396
Bsp19I CCATGG 1 cut(s) 1145
BspACI CCGC 4 cut(s) 930, 1066, 1114, 1669
BspANI GGCC 3 cut(s) 502, 1365, 1681
BspCNI CTCAG 7 cut(s) 32, 129, 166, 454, 726, 1522, 1630
BspEI TCCGGA 1 cut(s) 1602
BspHI TCATGA 2 cut(s) 765, 1153
BspPI GGATC 3 cut(s) 137, 1228, 1391
BspTNI GGTCTC 2 cut(s) 111, 1279
BsrDI GCAATG 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 589
BsrGI TGTACA 2 cut(s) 1331, 1716
BsrI ACTGG 5 cut(s) 218, 503, 1006, 1166, 1400
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 5 cut(s) 101, 1092, 1145, 1459, 1676
BssMI GATC 5 cut(s) 142, 229, 562, 1220, 1396
BssNAI GTATAC 1 cut(s) 587
BssT1I CCWWGG 3 cut(s) 101, 1092, 1145
Bst1107I GTATAC 1 cut(s) 587
Bst4CI ACNGT 8 cut(s) 336, 397, 539, 687, 1210, 1239, 1733, 1742
Bst6I CTCTTC 2 cut(s) 242, 1600
BstAUI TGTACA 2 cut(s) 1331, 1716
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 9 cut(s) 19, 137, 174, 441, 713, 1180, 1530, 1617, 1641
BstDSI CCRYGG 2 cut(s) 1145, 1676
BstF5I GGATG 3 cut(s) 575, 585, 1599
BstKTI GATC 5 cut(s) 145, 232, 565, 1223, 1399
BstMAI GTCTC 5 cut(s) 111, 180, 325, 1279, 1739
BstMBI GATC 5 cut(s) 142, 229, 562, 1220, 1396
BstMCI CGRYCG 1 cut(s) 1682
BstNSI RCATGY 1 cut(s) 1717
BstSCI CCNGG 2 cut(s) 1458, 1459
BstV1I GCAGC 3 cut(s) 1510, 1513, 1637
BstV2I GAAGAC 2 cut(s) 200, 868
BstX2I RGATCY 3 cut(s) 142, 562, 1220
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 142, 562, 1220
BstZ17I GTATAC 1 cut(s) 587
BstZI CGGCCG 1 cut(s) 1679
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 3 cut(s) 502, 1365, 1681
BtgI CCRYGG 2 cut(s) 1145, 1676
BtsCI GGATG 3 cut(s) 575, 585, 1599
BtsIMutI CAGTG 2 cut(s) 171, 1289
Cac8I GCNNGC 1 cut(s) 849
CciI TCATGA 2 cut(s) 765, 1153
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 1363
Cfr9I CCCGGG 1 cut(s) 1459
Csp6I GTAC 5 cut(s) 295, 1332, 1450, 1502, 1717
CspAI ACCGGT 1 cut(s) 589
CviAII CATG 8 cut(s) 298, 766, 1146, 1154, 1160, 1267, 1505, 1714
CviQI GTAC 5 cut(s) 295, 1332, 1450, 1502, 1717
DdeI CTNAG 9 cut(s) 19, 137, 174, 441, 713, 1180, 1530, 1617, 1641
DpnI GATC 5 cut(s) 144, 231, 564, 1222, 1398
DpnII GATC 5 cut(s) 142, 229, 562, 1220, 1396
DraI TTTAAA 1 cut(s) 462
EaeI YGGCCR 1 cut(s) 1679
EagI CGGCCG 1 cut(s) 1679
Eam1104I CTCTTC 2 cut(s) 242, 1600
EarI CTCTTC 2 cut(s) 242, 1600
EclXI CGGCCG 1 cut(s) 1679
Eco130I CCWWGG 3 cut(s) 101, 1092, 1145
Eco24I GRGCYC 1 cut(s) 1153
Eco31I GGTCTC 2 cut(s) 111, 1279
Eco52I CGGCCG 1 cut(s) 1679
Eco57I CTGAAG 3 cut(s) 224, 299, 621
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 1459
EcoRI GAATTC 1 cut(s) 761
EcoT14I CCWWGG 3 cut(s) 101, 1092, 1145
EcoT38I GRGCYC 1 cut(s) 1153
ErhI CCWWGG 3 cut(s) 101, 1092, 1145
Esp3I CGTCTC 1 cut(s) 1739
FaeI CATG 8 cut(s) 301, 769, 1149, 1157, 1163, 1270, 1508, 1717
FalI AAGNNNNNCTT 2 cut(s) 1110, 1142
FaqI GGGAC 2 cut(s) 747, 910
FatI CATG 8 cut(s) 297, 765, 1145, 1153, 1159, 1266, 1504, 1713
FauI CCCGC 1 cut(s) 1121
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 586
Fnu4HI GCNGC 5 cut(s) 1066, 1524, 1527, 1626, 1670
FokI GGATG 3 cut(s) 582, 592, 1586
FriOI GRGCYC 1 cut(s) 1153
Fsp4HI GCNGC 5 cut(s) 1066, 1524, 1527, 1626, 1670
FspBI CTAG 5 cut(s) 120, 482, 1380, 1520, 1655
GluI GCNGC 5 cut(s) 1066, 1524, 1527, 1626, 1670
GsuI CTGGAG 2 cut(s) 201, 1509
HaeIII GGCC 3 cut(s) 502, 1365, 1681
HapII CCGG 3 cut(s) 590, 1460, 1603
Hin1II CATG 8 cut(s) 301, 769, 1149, 1157, 1163, 1270, 1508, 1717
HincII GTYRAC 2 cut(s) 942, 1108
HindII GTYRAC 2 cut(s) 942, 1108
HindIII AAGCTT 3 cut(s) 236, 405, 1344
HinfI GANTC 5 cut(s) 71, 478, 711, 1088, 1121
HpaI GTTAAC 2 cut(s) 942, 1108
HpaII CCGG 3 cut(s) 590, 1460, 1603
HphI GGTGA 5 cut(s) 413, 551, 646, 803, 1001
Hpy166II GTNNAC 5 cut(s) 587, 647, 749, 942, 1108
Hpy188I TCNGA 7 cut(s) 22, 269, 306, 414, 1215, 1327, 1620
Hpy8I GTNNAC 5 cut(s) 587, 647, 749, 942, 1108
HpyAV CCTTC 4 cut(s) 645, 979, 1406, 1596
HpyCH4III ACNGT 8 cut(s) 336, 397, 539, 687, 1210, 1239, 1733, 1742
HpyCH4V TGCA 4 cut(s) 851, 959, 1625, 1703
HpyF3I CTNAG 9 cut(s) 19, 137, 174, 441, 713, 1180, 1530, 1617, 1641
Hsp92II CATG 8 cut(s) 301, 769, 1149, 1157, 1163, 1270, 1508, 1717
Kpn2I TCCGGA 1 cut(s) 1602
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 2 cut(s) 942, 1108
Kzo9I GATC 5 cut(s) 142, 229, 562, 1220, 1396
LmnI GCTCC 2 cut(s) 367, 1490
Lsp1109I GCAGC 3 cut(s) 1510, 1513, 1637
LweI GCATC 1 cut(s) 911
MaeI CTAG 5 cut(s) 120, 482, 1380, 1520, 1655
MaeIII GTNAC 3 cut(s) 10, 529, 652
MalI GATC 5 cut(s) 144, 231, 564, 1222, 1398
MboI GATC 5 cut(s) 142, 229, 562, 1220, 1396
MboII GAAGA 8 cut(s) 80, 200, 259, 827, 868, 1215, 1352, 1587
MflI RGATCY 3 cut(s) 142, 562, 1220
MhlI GDGCHC 2 cut(s) 90, 1153
MluCI AATT 3 cut(s) 278, 416, 761
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 3 cut(s) 292, 416, 1213
MroI TCCGGA 1 cut(s) 1602
MroXI GAANNNNTTC 2 cut(s) 761, 798
MseI TTAA 6 cut(s) 461, 491, 941, 1107, 1137, 1278
MslI CAYNNNNRTG 2 cut(s) 662, 1158
MspI CCGG 3 cut(s) 590, 1460, 1603
MspR9I CCNGG 2 cut(s) 1460, 1461
Mva1269I GAATGC 1 cut(s) 1051
NciI CCSGG 2 cut(s) 1460, 1461
NcoI CCATGG 1 cut(s) 1145
NdeII GATC 5 cut(s) 142, 229, 562, 1220, 1396
NlaIII CATG 8 cut(s) 301, 769, 1149, 1157, 1163, 1270, 1508, 1717
NmuCI GTSAC 2 cut(s) 10, 652
NspI RCATGY 1 cut(s) 1717
PagI TCATGA 2 cut(s) 765, 1153
PcsI WCGNNNNNNNCGW 1 cut(s) 879
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 2 cut(s) 761, 798
PfeI GAWTC 4 cut(s) 71, 478, 1088, 1121
PflMI CCANNNNNTGG 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 589
PkrI GCNGC 5 cut(s) 1067, 1525, 1528, 1627, 1671
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PshBI ATTAAT 1 cut(s) 1278
PspPI GGNCC 1 cut(s) 1363
PsrI GAACNNNNNNTAC 2 cut(s) 1433, 1465
PsuI RGATCY 3 cut(s) 142, 562, 1220
RsaI GTAC 5 cut(s) 296, 1333, 1451, 1503, 1718
RsaNI GTAC 5 cut(s) 295, 1332, 1450, 1502, 1717
RseI CAYNNNNRTG 2 cut(s) 662, 1158
SaqAI TTAA 6 cut(s) 461, 491, 941, 1107, 1137, 1278
SatI GCNGC 5 cut(s) 1066, 1524, 1527, 1626, 1670
Sau3AI GATC 5 cut(s) 142, 229, 562, 1220, 1396
Sau96I GGNCC 1 cut(s) 1363
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 2 cut(s) 1460, 1461
SduI GDGCHC 2 cut(s) 90, 1153
SfaNI GCATC 1 cut(s) 911
SmaI CCCGGG 1 cut(s) 1461
SmiMI CAYNNNNRTG 2 cut(s) 662, 1158
Sse9I AATT 3 cut(s) 278, 416, 761
SsiI CCGC 4 cut(s) 930, 1066, 1114, 1669
SspMI CTAG 5 cut(s) 120, 482, 1380, 1520, 1655
StyD4I CCNGG 2 cut(s) 1458, 1459
StyI CCWWGG 3 cut(s) 101, 1092, 1145
TaaI ACNGT 8 cut(s) 336, 397, 539, 687, 1210, 1239, 1733, 1742
TasI AATT 3 cut(s) 278, 416, 761
TatI WGTACW 3 cut(s) 294, 1331, 1716
TauI GCSGC 2 cut(s) 1068, 1672
TfiI GAWTC 4 cut(s) 71, 478, 1088, 1121
Tru1I TTAA 6 cut(s) 461, 491, 941, 1107, 1137, 1278
Tru9I TTAA 6 cut(s) 461, 491, 941, 1107, 1137, 1278
TscAI CASTG 2 cut(s) 178, 1296
TseFI GTSAC 2 cut(s) 10, 652
TseI GCWGC 3 cut(s) 1523, 1526, 1625
Tsp45I GTSAC 2 cut(s) 10, 652
TspMI CCCGGG 1 cut(s) 1459
TspRI CASTG 2 cut(s) 178, 1296
Van91I CCANNNNNTGG 1 cut(s) 398
VspI ATTAAT 1 cut(s) 1278
XapI RAATTY 2 cut(s) 416, 761
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 1717
XmaI CCCGGG 1 cut(s) 1459
XmiI GTMKAC 1 cut(s) 586
XmnI GAANNNNTTC 2 cut(s) 761, 798
XspI CTAG 5 cut(s) 120, 482, 1380, 1520, 1655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.