Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005972

Physical Location & Seq

Genomic Coordinates Forward (+)

3350884 .. 3355350

Gene Structure 4467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGCGAGCAAGGTCACGGATCCTACGGTTAAGATCGACCCGAAATCCACCGTCGGCGGCGGCGTTGAGGATGTATACGGTGAGGACACTGCCACCGAGGACCAACTCGTCACCCCCTGGACTTACTCCGTTGCCAGTGGTTATTCGTTGCTGAGAGATCCTCAATACAACAAGGGGCTAGCATTTACAGAGAAAGAGAGGGACGCCCATTACTTGCGTGGTCTTCTTCCTCCGGCAACTATTTCTCAACAAGTCCAGGAGAAGAAGTTGATGAATACCATCCGACAATATCAAGTCCCGTTGCAAAAATATATGGCACTGACGGAACTCCAGGAGAGGAATGAGAGGCTGTTCTACAAACTTCTCATTGATAATGTCGAGGAATTGCTACCAATTGTCTACACTCCGACTGTTGGTGAGGCTTGCCAGAAATTCGGGAGCATCTTCAGGCGCCCTCAGGGTCTTTACATAAGTCTAAAAGAGAAGGGTAAAGTTCTTGAGGTATTGAAGAACTGGCCTGTAAGGGCTGTTCAAGTTATTGTTGTGACTGATGGTGAACGTATACTGGGACTCGGTGACCTTGGTTGTCAGGGGATGGGAATTCCTGTGGGGAAGTTGGCATTGTACACGGCACTTGGAGGAGTTCGCCCCTCAGCGTGTTTGCCTGTAACAATTGATGTTGGGACAAACAATGAGAAGATGCTGGATGATGAGTTTTACATTGGACTCAGACAAAAGAGGACAAGGGGAAAGGAGTACGAGATCGATCTTTTAGAAGAGTTCATGAGTGCTGTCAAGCAGAACTATGGCGAAAAAGTTCTTGTACAGTTCGAAGATTTTGCAAACCACAATGCTTTTGAGCTGCTGGCCAAATATAGATCATCTCATCTCGTCTTCAATGATGACATACAGGGGACGGCATCTGTAGTTCTTGCAGGAGTTGTGGCAGCACTGAAGTTAATCGGTGGTTCCCTGTCTGAGCATAGGTTTTTGTTCCTTGGCGCTGGAGAAGCTGGTACCGGTATAGCAGAACTAATAGCTCTTGAGATCTCGAAAAGGACAAAAGTTCCTGTGGAAGAGGCCCGTAAGAATGTTCCAGATCGATCTGGCTTGTTGATTCAAAGGTGGGGATTGATTGTTATCTCTCGTAAAGATTCTCTTCAACATTTTAAGCAGCCTTGGGCTCATGAGCATGAGCCTGTTGATAATCTTTTGGATGCTGTCAAGGCAATTAAACCAACAGTTCTTATTGGATCGTCTGGTGTTGGAAGAACATTTACAAAGGAGGTGATTGAAGCAGTATCGTCCTTCAATGAGAAACCTCTCATTTTGGCTCTTTCCAACCCAACATCACAATCTGAATGTACCGCTGAAGAAGCTTATACTTACAGTGAGGGTCGCGCAATTTTTGCCAGCGGAAGTCCATTTGATCCTGTTGAGTACAATGGCAAAGTTTTTGTTCCTGGCCAGTCCAACAATGCATACATTTTTCCTGGATTTGGTCTGGGTTTGGTTATCTCTGGAGCAATCCGTGTTCACGATGACATGCTTCTGGCAGCCTCGGAAGCCTTGGCGGGGCAAGTTTCCGAGGAGAATTTTGCACAGGGGCTGATCTATCCACCATTGTCGAACATCAGAAAGATCTCTGCCCAAGTAGCTGCTAATGTAGCTGCCAAGGCATATGACCTTGGCGTGGCTACGCGTCTCCCTCGTCCTGAGAATCTTGTGAAGCATGCCGAGAGTTGCATGTACAGTCCCGTCTACAGAAACTACCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006108 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0055114 GO:0065003 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

593

Amino Acids

65.19

Weight (kDa)

5.98

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19900 AT2G19900
fragaria_vesca	FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000
malus_domestica	MD02G1064800.v1.1 MD15G1195500.v1.1
prunus_persica	Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1
pyrus_communis	pycom02g05090 pycom15g17470
rosa_chinensis	RchiOBHm_Chr2g0091741
rosa_laevigata	RLG00000016248
rosa_roxburghii	Rroxscaffold_2G00149780
rosa_rugosa	Rorug02G0020300
rosa_samantha	Rh2BG064200 Rh2CG065800 Rh2DG064300
rosa_wichuraiana	Rw2G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	1016
AccB1I	GGYRCC	2 cut(s)	450, 1016
AccI	GTMKAC	4 cut(s)	75, 399, 562, 1761
AccII	CGCG	2 cut(s)	1401, 1702
AciI	CCGC	6 cut(s)	57, 60, 1368, 1416, 1574, 1774
AclWI	GGATC	5 cut(s)	14, 27, 152, 1261, 1424
AcoI	YGGCCR	2 cut(s)	867, 1465
AcsI	RAATTY	3 cut(s)	431, 600, 1594
AcuI	CTGAAG	3 cut(s)	430, 974, 1392
AcyI	GRCGYC	2 cut(s)	204, 451
AfaI	GTAC	7 cut(s)	626, 758, 825, 1018, 1366, 1442, 1751
AfiI	CCNNNNNNNGG	4 cut(s)	413, 1499, 1575, 1693
AflIII	ACRYGT	1 cut(s)	1700
AgeI	ACCGGT	1 cut(s)	1019
AgsI	TTSAA	7 cut(s)	508, 533, 898, 1121, 1163, 1295, 1312
AjnI	CCWGG	5 cut(s)	116, 255, 330, 1462, 1492
AluBI	AGCT	6 cut(s)	862, 1013, 1040, 1379, 1658, 1670
AluI	AGCT	6 cut(s)	862, 1013, 1040, 1379, 1658, 1670
Alw26I	GTCTC	1 cut(s)	1709
AlwI	GGATC	5 cut(s)	14, 27, 152, 1261, 1424
AlwNI	CAGNNNCTG	1 cut(s)	1609
AoxI	GGCC	4 cut(s)	515, 867, 1080, 1465
ApeKI	GCWGC	6 cut(s)	862, 947, 1174, 1556, 1658, 1670
ApoI	RAATTY	3 cut(s)	431, 600, 1594
AsiGI	ACCGGT	1 cut(s)	1019
Asp700I	GAANNNNTTC	1 cut(s)	816
Asp718I	GGTACC	1 cut(s)	1016
AspLEI	GCGC	3 cut(s)	453, 1004, 1403
AspS9I	GGNCC	2 cut(s)	100, 1081
AsuHPI	GGTGA	6 cut(s)	92, 103, 428, 566, 587, 1300
AsuII	TTCGAA	1 cut(s)	831
AsuNHI	GCTAGC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	456
BalI	TGGCCA	2 cut(s)	869, 1467
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	2 cut(s)	450, 1016
BanII	GRGCYC	1 cut(s)	1186
BarI	GAAGNNNNNNTAC	2 cut(s)	1261, 1293
BbsI	GAAGAC	2 cut(s)	215, 886
BbvCI	CCTCAGC	1 cut(s)	652
BbvI	GCAGC	6 cut(s)	849, 959, 1186, 1568, 1645, 1657
BccI	CCATC	3 cut(s)	287, 545, 589
BceAI	ACGGC	2 cut(s)	645, 933
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	5 cut(s)	118, 257, 332, 1464, 1494
BcoDI	GTCTC	1 cut(s)	1709
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	924, 1762
BfoI	RGCGCY	2 cut(s)	454, 1005
BglII	AGATCT	2 cut(s)	1047, 1641
BisI	GCNGC	8 cut(s)	58, 61, 863, 948, 1175, 1557, 1659, 1671
BlsI	GCNGC	8 cut(s)	59, 62, 864, 949, 1176, 1558, 1660, 1672
Bme1390I	CCNGG	5 cut(s)	118, 257, 332, 1464, 1494
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 1081
BmiI	GGNNCC	4 cut(s)	21, 452, 970, 1018
BmrFI	CCNGG	5 cut(s)	118, 257, 332, 1464, 1494
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	4 cut(s)	450, 690, 929, 1207
BmtI	GCTAGC	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	215, 886
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	3 cut(s)	314, 1026, 1542
Bpu10I	CCTNAGC	1 cut(s)	652
Bpu14I	TTCGAA	1 cut(s)	831
BpuEI	CTTGAG	2 cut(s)	518, 1064
Bsa29I	ATCGAT	2 cut(s)	765, 1102
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaHI	GRCGYC	2 cut(s)	204, 451
BsaWI	WCCGGW	1 cut(s)	1019
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 1499, 1575, 1693
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	4 cut(s)	135, 518, 570, 1468
Bse21I	CCTNAGG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	5 cut(s)	118, 257, 332, 1464, 1494
BseCI	ATCGAT	2 cut(s)	765, 1102
BseGI	GGATG	5 cut(s)	76, 279, 600, 712, 1222
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	4 cut(s)	413, 1499, 1575, 1693
BseMII	CTCAG	6 cut(s)	143, 470, 666, 742, 969, 1707
BseNI	ACTGG	4 cut(s)	135, 518, 570, 1468
BseRI	GAGGAG	2 cut(s)	654, 1604
BseXI	GCAGC	6 cut(s)	849, 959, 1186, 1568, 1645, 1657
Bsh1236I	CGCG	2 cut(s)	1401, 1702
BshFI	GGCC	4 cut(s)	517, 869, 1082, 1467
BshNI	GGYRCC	2 cut(s)	450, 1016
BshTI	ACCGGT	1 cut(s)	1019
BshVI	ATCGAT	2 cut(s)	765, 1102
BsiSI	CCGG	2 cut(s)	233, 1020
BslFI	GGGAC	6 cut(s)	215, 281, 582, 697, 928, 1740
BslI	CCNNNNNNNGG	4 cut(s)	413, 1499, 1575, 1693
BsmAI	GTCTC	1 cut(s)	1709
BsmBI	CGTCTC	1 cut(s)	1709
BsmFI	GGGAC	6 cut(s)	215, 281, 582, 697, 928, 1740
BsnI	GGCC	4 cut(s)	517, 869, 1082, 1467
Bsp119I	TTCGAA	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	1186
Bsp1407I	TGTACA	3 cut(s)	624, 823, 1749
BspACI	CCGC	6 cut(s)	57, 60, 1368, 1416, 1574, 1774
BspANI	GGCC	4 cut(s)	517, 869, 1082, 1467
BspCNI	CTCAG	6 cut(s)	144, 469, 665, 741, 970, 1708
BspDI	ATCGAT	2 cut(s)	765, 1102
BspFNI	CGCG	2 cut(s)	1401, 1702
BspHI	TCATGA	2 cut(s)	783, 1186
BspLI	GGNNCC	4 cut(s)	21, 452, 970, 1018
BspOI	GCTAGC	1 cut(s)	182
BspPI	GGATC	5 cut(s)	14, 27, 152, 1261, 1424
BspT104I	TTCGAA	1 cut(s)	831
BspT107I	GGYRCC	2 cut(s)	450, 1016
BsrFI	RCCGGY	1 cut(s)	1019
BsrGI	TGTACA	3 cut(s)	624, 823, 1749
BsrI	ACTGG	4 cut(s)	135, 518, 570, 1468
BssAI	RCCGGY	1 cut(s)	1019
BssNAI	GTATAC	2 cut(s)	76, 563
BssNI	GRCGYC	2 cut(s)	204, 451
BssT1I	CCWWGG	6 cut(s)	580, 997, 1178, 1569, 1674, 1687
Bst1107I	GTATAC	2 cut(s)	76, 563
Bst2UI	CCWGG	5 cut(s)	118, 257, 332, 1464, 1494
Bst4CI	ACNGT	8 cut(s)	28, 52, 80, 412, 828, 1243, 1391, 1754
Bst6I	CTCTTC	3 cut(s)	771, 1071, 1164
BstACI	GRCGYC	2 cut(s)	204, 451
BstAPI	GCANNNNNTGC	1 cut(s)	1409
BstAUI	TGTACA	3 cut(s)	624, 823, 1749
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	6 cut(s)	7, 180, 424, 867, 1414, 1734
BstDEI	CTNAG	6 cut(s)	152, 456, 652, 728, 978, 1716
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	5 cut(s)	76, 279, 600, 712, 1222
BstFNI	CGCG	2 cut(s)	1401, 1702
BstH2I	RGCGCY	2 cut(s)	454, 1005
BstHHI	GCGC	3 cut(s)	453, 1004, 1403
BstMAI	GTCTC	1 cut(s)	1709
BstMWI	GCNNNNNNNGC	8 cut(s)	1010, 1226, 1376, 1409, 1565, 1655, 1667, 1676
BstNI	CCWGG	5 cut(s)	118, 257, 332, 1464, 1494
BstNSI	RCATGY	3 cut(s)	1549, 1736, 1750
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	5 cut(s)	116, 255, 330, 1462, 1492
BstSFI	CTRYAG	2 cut(s)	924, 1762
BstUI	CGCG	2 cut(s)	1401, 1702
BstV1I	GCAGC	6 cut(s)	849, 959, 1186, 1568, 1645, 1657
BstV2I	GAAGAC	2 cut(s)	215, 886
BstX2I	RGATCY	4 cut(s)	19, 157, 1047, 1641
BstYI	RGATCY	4 cut(s)	19, 157, 1047, 1641
BstZ17I	GTATAC	2 cut(s)	76, 563
Bsu15I	ATCGAT	2 cut(s)	765, 1102
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	517, 869, 1082, 1467
BsuTUI	ATCGAT	2 cut(s)	765, 1102
BtsCI	GGATG	5 cut(s)	76, 279, 600, 712, 1222
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	5 cut(s)	87, 142, 317, 950, 1396
Cac8I	GCNNGC	6 cut(s)	7, 180, 424, 867, 1414, 1734
CaiI	CAGNNNCTG	1 cut(s)	1609
CciI	TCATGA	2 cut(s)	783, 1186
CfoI	GCGC	3 cut(s)	453, 1004, 1403
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	2 cut(s)	100, 1081
ClaI	ATCGAT	2 cut(s)	765, 1102
CseI	GACGC	2 cut(s)	212, 1691
Csp6I	GTAC	7 cut(s)	625, 757, 824, 1017, 1365, 1441, 1750
CspAI	ACCGGT	1 cut(s)	1019
CviAII	CATG	6 cut(s)	784, 1187, 1193, 1546, 1733, 1747
CviQI	GTAC	7 cut(s)	625, 757, 824, 1017, 1365, 1441, 1750
DdeI	CTNAG	6 cut(s)	152, 456, 652, 728, 978, 1716
DinI	GGCGCC	1 cut(s)	452
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	867, 1465
Eam1104I	CTCTTC	3 cut(s)	771, 1071, 1164
EarI	CTCTTC	3 cut(s)	771, 1071, 1164
Eco130I	CCWWGG	6 cut(s)	580, 997, 1178, 1569, 1674, 1687
Eco24I	GRGCYC	1 cut(s)	1186
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	430, 974, 1392
Eco81I	CCTNAGG	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	575
EcoO65I	GGTNACC	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	5 cut(s)	116, 255, 330, 1462, 1492
EcoT14I	CCWWGG	6 cut(s)	580, 997, 1178, 1569, 1674, 1687
EcoT22I	ATGCAT	1 cut(s)	1483
EcoT38I	GRGCYC	1 cut(s)	1186
EgeI	GGCGCC	1 cut(s)	452
EheI	GGCGCC	1 cut(s)	452
ErhI	CCWWGG	6 cut(s)	580, 997, 1178, 1569, 1674, 1687
Esp3I	CGTCTC	1 cut(s)	1709
FaeI	CATG	6 cut(s)	787, 1190, 1196, 1549, 1736, 1750
FalI	AAGNNNNNCTT	2 cut(s)	1143, 1175
FaqI	GGGAC	6 cut(s)	215, 281, 582, 697, 928, 1740
FatI	CATG	6 cut(s)	783, 1186, 1192, 1545, 1732, 1746
FauI	CCCGC	1 cut(s)	1567
FauNDI	CATATG	1 cut(s)	1681
FblI	GTMKAC	4 cut(s)	75, 399, 562, 1761
Fnu4HI	GCNGC	8 cut(s)	58, 61, 863, 948, 1175, 1557, 1659, 1671
FokI	GGATG	5 cut(s)	83, 266, 607, 719, 1229
FriOI	GRGCYC	1 cut(s)	1186
Fsp4HI	GCNGC	8 cut(s)	58, 61, 863, 948, 1175, 1557, 1659, 1671
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	3 cut(s)	452, 1003, 1402
GluI	GCNGC	8 cut(s)	58, 61, 863, 948, 1175, 1557, 1659, 1671
GsuI	CTGGAG	3 cut(s)	314, 1026, 1542
HaeII	RGCGCY	2 cut(s)	454, 1005
HaeIII	GGCC	4 cut(s)	517, 869, 1082, 1467
HapII	CCGG	2 cut(s)	233, 1020
HgaI	GACGC	2 cut(s)	212, 1691
HhaI	GCGC	3 cut(s)	453, 1004, 1403
Hin1I	GRCGYC	2 cut(s)	204, 451
Hin1II	CATG	6 cut(s)	787, 1190, 1196, 1549, 1736, 1750
Hin6I	GCGC	3 cut(s)	451, 1002, 1401
HinP1I	GCGC	3 cut(s)	451, 1002, 1401
HindIII	AAGCTT	1 cut(s)	1377
HinfI	GANTC	5 cut(s)	570, 726, 1117, 1154, 1720
HpaII	CCGG	2 cut(s)	233, 1020
HphI	GGTGA	6 cut(s)	92, 103, 428, 566, 587, 1300
Hpy166II	GTNNAC	7 cut(s)	76, 400, 557, 563, 627, 1537, 1762
Hpy188I	TCNGA	8 cut(s)	284, 408, 731, 979, 1360, 1564, 1588, 1637
Hpy8I	GTNNAC	7 cut(s)	76, 400, 557, 563, 627, 1537, 1762
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	478, 1318
HpyCH4III	ACNGT	8 cut(s)	28, 52, 80, 412, 828, 1243, 1391, 1754
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	304, 842, 935, 1481, 1601, 1746
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1010, 1226, 1376, 1409, 1565, 1655, 1667, 1676
HpyF3I	CTNAG	6 cut(s)	152, 456, 652, 728, 978, 1716
HpySE526I	ACGT	1 cut(s)	559
Hsp92I	GRCGYC	2 cut(s)	204, 451
Hsp92II	CATG	6 cut(s)	787, 1190, 1196, 1549, 1736, 1750
HspAI	GCGC	3 cut(s)	451, 1002, 1401
KasI	GGCGCC	1 cut(s)	450
KpnI	GGTACC	1 cut(s)	1020
LmnI	GCTCC	2 cut(s)	438, 1523
Lsp1109I	GCAGC	6 cut(s)	849, 959, 1186, 1568, 1645, 1657
LweI	GCATC	4 cut(s)	450, 690, 929, 1207
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	5 cut(s)	13, 109, 544, 575, 667
MfeI	CAATTG	2 cut(s)	393, 672
MflI	RGATCY	4 cut(s)	19, 157, 1047, 1641
MhlI	GDGCHC	1 cut(s)	1186
MlsI	TGGCCA	2 cut(s)	869, 1467
MluCI	AATT	8 cut(s)	383, 393, 431, 600, 672, 1230, 1404, 1594
MluI	ACGCGT	1 cut(s)	1700
MluNI	TGGCCA	2 cut(s)	869, 1467
Mly113I	GGCGCC	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	564, 720
MmeI	TCCRAC	5 cut(s)	307, 431, 1246, 1365, 1497
Mox20I	TGGCCA	2 cut(s)	869, 1467
Mph1103I	ATGCAT	1 cut(s)	1483
MroXI	GAANNNNTTC	1 cut(s)	816
MscI	TGGCCA	2 cut(s)	869, 1467
MseI	TTAA	4 cut(s)	30, 959, 1170, 1233
MslI	CAYNNNNRTG	1 cut(s)	1191
Msp20I	TGGCCA	2 cut(s)	869, 1467
MspA1I	CMGCKG	2 cut(s)	1370, 1416
MspI	CCGG	2 cut(s)	233, 1020
MspR9I	CCNGG	5 cut(s)	118, 257, 332, 1464, 1494
MunI	CAATTG	2 cut(s)	393, 672
MvaI	CCWGG	5 cut(s)	118, 257, 332, 1464, 1494
MvnI	CGCG	2 cut(s)	1401, 1702
MwoI	GCNNNNNNNGC	8 cut(s)	1010, 1226, 1376, 1409, 1565, 1655, 1667, 1676
NarI	GGCGCC	1 cut(s)	451
NdeI	CATATG	1 cut(s)	1681
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	6 cut(s)	787, 1190, 1196, 1549, 1736, 1750
NlaIV	GGNNCC	4 cut(s)	21, 452, 970, 1018
NmeAIII	GCCGAG	1 cut(s)	1762
NmuCI	GTSAC	4 cut(s)	13, 109, 544, 575
NsiI	ATGCAT	1 cut(s)	1483
NspI	RCATGY	3 cut(s)	1549, 1736, 1750
NspV	TTCGAA	1 cut(s)	831
PaeI	GCATGC	1 cut(s)	1736
PagI	TCATGA	2 cut(s)	783, 1186
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	3 cut(s)	1117, 1154, 1720
PfoI	TCCNGGA	3 cut(s)	255, 330, 1492
PinAI	ACCGGT	1 cut(s)	1019
PkrI	GCNGC	8 cut(s)	59, 62, 864, 949, 1176, 1558, 1660, 1672
PleI	GAGTC	2 cut(s)	564, 720
PluTI	GGCGCC	1 cut(s)	454
PpsI	GAGTC	2 cut(s)	564, 720
Psp6I	CCWGG	5 cut(s)	116, 255, 330, 1462, 1492
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	5 cut(s)	116, 255, 330, 1462, 1492
PspN4I	GGNNCC	4 cut(s)	21, 452, 970, 1018
PspPI	GGNCC	2 cut(s)	100, 1081
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PstNI	CAGNNNCTG	1 cut(s)	1609
PsuI	RGATCY	4 cut(s)	19, 157, 1047, 1641
RsaI	GTAC	7 cut(s)	626, 758, 825, 1018, 1366, 1442, 1751
RsaNI	GTAC	7 cut(s)	625, 757, 824, 1017, 1365, 1441, 1750
RseI	CAYNNNNRTG	1 cut(s)	1191
SaqAI	TTAA	4 cut(s)	30, 959, 1170, 1233
SatI	GCNGC	8 cut(s)	58, 61, 863, 948, 1175, 1557, 1659, 1671
Sau96I	GGNCC	2 cut(s)	100, 1081
SchI	GAGTC	2 cut(s)	564, 720
ScrFI	CCNGG	5 cut(s)	118, 257, 332, 1464, 1494
SduI	GDGCHC	1 cut(s)	1186
SfaNI	GCATC	4 cut(s)	450, 690, 929, 1207
SfcI	CTRYAG	2 cut(s)	924, 1762
SfoI	GGCGCC	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	831
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	1191
SmlI	CTYRAG	2 cut(s)	497, 1043
SmoI	CTYRAG	2 cut(s)	497, 1043
SphI	GCATGC	1 cut(s)	1736
Sse9I	AATT	8 cut(s)	383, 393, 431, 600, 672, 1230, 1404, 1594
SsiI	CCGC	6 cut(s)	57, 60, 1368, 1416, 1574, 1774
SspDI	GGCGCC	1 cut(s)	450
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	5 cut(s)	116, 255, 330, 1462, 1492
StyI	CCWWGG	6 cut(s)	580, 997, 1178, 1569, 1674, 1687
TaaI	ACNGT	8 cut(s)	28, 52, 80, 412, 828, 1243, 1391, 1754
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	7 cut(s)	36, 378, 765, 831, 1052, 1102, 1628
TasI	AATT	8 cut(s)	383, 393, 431, 600, 672, 1230, 1404, 1594
TatI	WGTACW	4 cut(s)	624, 823, 1440, 1749
TauI	GCSGC	2 cut(s)	60, 63
TfiI	GAWTC	3 cut(s)	1117, 1154, 1720
Tru1I	TTAA	4 cut(s)	30, 959, 1170, 1233
Tru9I	TTAA	4 cut(s)	30, 959, 1170, 1233
TscAI	CASTG	5 cut(s)	94, 142, 324, 957, 1396
TseFI	GTSAC	4 cut(s)	13, 109, 544, 575
TseI	GCWGC	6 cut(s)	862, 947, 1174, 1556, 1658, 1670
Tsp45I	GTSAC	4 cut(s)	13, 109, 544, 575
TspDTI	ATGAA	2 cut(s)	287, 772
TspGWI	ACGGA	4 cut(s)	32, 118, 338, 1520
TspRI	CASTG	5 cut(s)	94, 142, 324, 957, 1396
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	3 cut(s)	431, 600, 1594
XceI	RCATGY	3 cut(s)	1549, 1736, 1750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	4 cut(s)	75, 399, 562, 1761
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.