Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005972

Physical Location & Seq

Genomic Coordinates Reverse (-)

1642166 .. 1644444

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0020300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGGCTTTGTGCTCCTCTGAGAGAAACAGCTTCTGGGTCGGCTCTGTTTTGGAAGCTATGGTGGTCAACACTGTTCTTGCTGCTCACAACTCTCTTGCTCTGTTGCTCTTGGCGACTGGATCGCTGATGAATGATATCAATGTGTCGCCAAAATTAGCTGCATTCGCCGGAAGTGTTGCTCCCTTCTGCAGCTTTCCTTTTGAAGAACTATTCAAATTGGAAAAACCTGGTCCGGAAAACAAAGATGCCAGTGACACAGAAGATGACGAGGAAGATGATGATGATGATGTGCCTGACGATGAAGATGACGCAGGAGATGAGGACTTCTCAGGCGAAGAAGGGGAAGATGCAGATCCTGAGGATGTGCCTGAAGCCAATGGTGATGGAGGAAGTGATGACGATGATGACGAGGATGATGATGATGGTGATGATGATGAAGATGAGGATGCAGAGGATGAAGAAGAGGAAGAAGAGGAGGAGGAGGTTCCGCAGCCTCCTGCTAAAAAGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

172

Amino Acids

18.65

Weight (kDa)

4.05

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19900 AT2G19900
fragaria_vesca	FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000 FvH4_1g06000
malus_domestica	MD02G1064800.v1.1 MD15G1195500.v1.1
prunus_persica	Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1 Prupe.7G221100_v2.0.a1
pyrus_communis	pycom02g05090 pycom15g17470
rosa_chinensis	RchiOBHm_Chr2g0091741
rosa_laevigata	RLG00000016248
rosa_roxburghii	Rroxscaffold_2G00149780
rosa_rugosa	Rorug02G0020300
rosa_samantha	Rh2BG064200 Rh2CG065800 Rh2DG064300
rosa_wichuraiana	Rw2G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	130, 350
AcuI	CTGAAG	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	206, 217
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	33, 59, 161, 195
AluI	AGCT	4 cut(s)	33, 59, 161, 195
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	130, 350
AlwNI	CAGNNNCTG	2 cut(s)	36, 359
Aor13HI	TCCGGA	1 cut(s)	235
ApeKI	GCWGC	4 cut(s)	83, 161, 192, 493
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	395, 440
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	4 cut(s)	70, 148, 204, 505
BccI	CCATC	2 cut(s)	380, 419
BciT130I	CCWGG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	4 cut(s)	84, 162, 193, 494
BlsI	GCNGC	4 cut(s)	85, 163, 194, 495
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	238, 340, 439
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaBI	GATNNNNATC	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	124, 252
Bse21I	CCTNAGG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	370, 421, 454, 463
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	12, 345, 351
BseNI	ACTGG	2 cut(s)	124, 252
BseRI	GAGGAG	4 cut(s)	7, 491, 494, 497
BseXI	GCAGC	4 cut(s)	70, 148, 204, 505
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	171, 236
BsmI	GAATGC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	122, 355
BspACI	CCGC	1 cut(s)	491
BspCNI	CTCAG	3 cut(s)	13, 344, 352
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	194
BspPI	GGATC	2 cut(s)	130, 350
BsrI	ACTGG	2 cut(s)	124, 252
BssMI	GATC	2 cut(s)	122, 355
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	459, 468
BstDEI	CTNAG	3 cut(s)	21, 331, 360
BstF5I	GGATG	4 cut(s)	370, 421, 454, 463
BstKTI	GATC	2 cut(s)	125, 358
BstMBI	GATC	2 cut(s)	122, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	70, 148, 204, 505
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu36I	CCTNAGG	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	370, 421, 454, 463
BtsIMutI	CAGTG	2 cut(s)	72, 259
CaiI	CAGNNNCTG	2 cut(s)	36, 359
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	229
CviJI	RGCY	8 cut(s)	8, 33, 45, 59, 161, 195, 377, 496
CviKI_1	RGCY	8 cut(s)	8, 33, 45, 59, 161, 195, 377, 496
DdeI	CTNAG	3 cut(s)	21, 331, 360
DpnI	GATC	2 cut(s)	124, 357
DpnII	GATC	2 cut(s)	122, 355
Eam1104I	CTCTTC	2 cut(s)	459, 468
EarI	CTCTTC	2 cut(s)	459, 468
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	139
FaiI	YATR	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	84, 162, 193, 494
FokI	GGATG	4 cut(s)	377, 428, 461, 470
Fsp4HI	GCNGC	4 cut(s)	84, 162, 193, 494
GluI	GCNGC	4 cut(s)	84, 162, 193, 494
HapII	CCGG	2 cut(s)	171, 236
HgaI	GACGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	171, 236
HphI	GGTGA	2 cut(s)	395, 440
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	236, 359
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	196, 335
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	164, 192, 353, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	21, 331, 360
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	122, 355
LmnI	GCTCC	2 cut(s)	20, 187
Lsp1109I	GCAGC	4 cut(s)	70, 148, 204, 505
LweI	GCATC	3 cut(s)	238, 340, 439
MabI	ACCWGGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	124, 357
MboI	GATC	2 cut(s)	122, 355
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	155, 218
MroI	TCCGGA	1 cut(s)	235
MspI	CCGG	2 cut(s)	171, 236
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	122, 355
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	85, 163, 194, 495
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	194
PstNI	CAGNNNCTG	2 cut(s)	36, 359
PsuI	RGATCY	1 cut(s)	355
SatI	GCNGC	4 cut(s)	84, 162, 193, 494
Sau3AI	GATC	2 cut(s)	122, 355
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	35, 61, 163, 197, 232, 489
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	3 cut(s)	238, 340, 439
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	155, 218
SsiI	CCGC	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	2 cut(s)	155, 218
TscAI	CASTG	2 cut(s)	79, 259
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	83, 161, 192, 493
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	146, 318, 453, 474
TspRI	CASTG	2 cut(s)	79, 259
VpaK11BI	GGWCC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.