AT2G20110

tesmin tso1-like cxc

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
8683979 .. 8687283
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20110.3

Sequence Viewer

Length: 1716 bp
ATGGGAGAAGGTGAAGAAGGAGACAAATTCCCGCCAAAAACGGATGAGGTTACACAAGAGTCTATGAAGTCGGCGAGGCAACTCGATTTTACTGGTGGTTCTTCCGATGTTGAGCATTCACACTCTAATCAAGCTTCTTCGATGGCTGCTGCATCAATCCCTTCACCGATTGTGACGGTTACGCGGCCAATAATTACCAGTCAGGCACCACCGACGGTGGCGACTCCGATTCCACCGCCGCCACAATCTCAGGGCATCATCCTTCACGTCCCAATTAGACATCCGAGGCCCGAATCTCCGAATTCGATGCCAAGGCCTGCTGGGGAAACTAGAGATGGAACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACACTCACGGTGCTTGAAGCTGTATTGTGAATGTTTTGCATCTGGCACTTACTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAACGTTGAAAATGAACCTGCGAGACGACAAGCGGTTGAATCAACTCTGGAACGGAATCCGAATGCGTTCAGGCCAAAGATTGCTGCTAGTCCACATGGTGGACGAGATAACAGGGAGGAGGTTGGTGACGTTGTGATGTTAGCGAGACACAACAAAGGCTGTCACTGCAAGAAATCCGGATGTCTTAAGAAGTATTGTGAGTGCTTTCAAGCAAACATTCTTTGTTCTGAGAACTGCAAATGCTTGGATTGCAAAAACTTTGAAGGGAGTGAAGTTAGACAATCTCTTTTTCACGGTGAACATTCCCACAACTTGGCTTATCTTCAACACGCAAATGCTGCCATAACCGGAGCTATTGGTTCCTCTGGCTTTGCATCTGCTCCACCTCCTAAGAGAAGGAAAGGTCAGGAGATTTTCTTCAACCAAGGAACCAAAGATTCATCCACTCATAGGCTTGGCCAGGCAAATAACGGAAGAACCACATCTTCGCAAACTGGTTCTCGTGCTGGAGGCAATGCGTCGTTAGGCCCATCCAAAGTTGTATATAAGTCTCTTTTGGCAAACATAATTAAACCAATGGATGTGAAAGCACTATGTTCTGTTCTGGTTGCTGTAGCTGGGGAAGCTGCAAAGACATTAACAGAAAAACGGTTAGCAAATCAGAAAGAAACTTCCGTAGCTTCTTCTGTGCAAGATCAAGGACACGTCAATAATAAAGCTGAGAAATCTGGTTTAGAGGATTCAAATGCAGATGGCTCCAAAGGGAGGTCACTATCTCCAGAAACTTTGGCATTGATGTGTGACGAACGGGACACAATGTTAATGGTTGCAGCTTCACCTAATTGTTCGGTGGAGCCTACGTCACAGCTACCAAACGGGCAAGACCAGGTTTATGCAGAACAAGAAAAAGTAGTATTAACCAAGTTCCGTGACTGCCTTAACCGAATAATCTCCTGTGGAGAAGTAAAAGAATCAAATTGTTCTATGTCAAGAATGGATCTAGATACACCTGTACAAACGACTGTCAGAATCGACCCAGTGGTTCAACAAGCTCCAGTTGCAAATGGAGTTTCACAAACCGCAAAGCAACCTTCCCAGCTAAACACAACAACACCAAACACATCCTCACAAACTGCAAATGGAGTTTCACAAACGGCAAAGCAACCTTCCCAGCTAACCACAACAACAACAACACCAAACACATCCTCACAAACTCATCTTCATAAAACTCCAGCTTTGTCTGAGAAGAAAGACCTCTAA

Protein Analysis

571

Amino Acids

61.31

Weight (kDa)

8.5

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCR PF03638 118 - 153 8.8e-11 Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR PF03638 204 - 238 2.2e-12 Tesmin/TSO1-like CXC domain, cysteine-rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 2 cut(s) 554, 769
AccII CGCG 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 632
AciI CCGC 6 cut(s) 32, 184, 236, 239, 488, 1536
AclI AACGTT 1 cut(s) 459
AclWI GGATC 1 cut(s) 1461
AcoI YGGCCR 2 cut(s) 185, 913
AcsI RAATTY 2 cut(s) 26, 301
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 1 cut(s) 1470
AfiI CCNNNNNNNGG 4 cut(s) 554, 769, 906, 1221
AflII CTTAAG 1 cut(s) 641
AflIII ACRYGT 1 cut(s) 1159
AjiI CACGTC 2 cut(s) 268, 1162
AjnI CCWGG 2 cut(s) 915, 1341
Alw26I GTCTC 4 cut(s) 15, 472, 595, 1011
AlwI GGATC 1 cut(s) 1461
Aor13HI TCCGGA 1 cut(s) 632
AoxI GGCC 6 cut(s) 185, 287, 314, 527, 913, 982
ApeKI GCWGC 6 cut(s) 146, 149, 539, 794, 1082, 1286
ApoI RAATTY 2 cut(s) 26, 301
Asp700I GAANNNNTTC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 288, 983
AsuHPI GGTGA 5 cut(s) 23, 156, 593, 764, 1284
BaeI ACNNNNGTAYC 2 cut(s) 1452, 1485
BalI TGGCCA 1 cut(s) 915
BanI GGYRCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 957
BbvI GCAGC 6 cut(s) 133, 136, 526, 781, 1069, 1298
BccI CCATC 5 cut(s) 136, 329, 422, 994, 1202
BceAI ACGGC 1 cut(s) 1626
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 917, 1343
BcoDI GTCTC 4 cut(s) 15, 472, 595, 1011
BfaI CTAG 3 cut(s) 330, 543, 1457
BfmI CTRYAG 1 cut(s) 1068
BfrI CTTAAG 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 8 cut(s) 147, 150, 185, 239, 540, 795, 1083, 1287
BlsI GCNGC 8 cut(s) 148, 151, 186, 240, 541, 796, 1084, 1288
Bme1390I CCNGG 2 cut(s) 917, 1343
BmgBI CACGTC 2 cut(s) 268, 1162
BmgT120I GGNCC 2 cut(s) 288, 983
BmiI GGNNCC 6 cut(s) 207, 340, 817, 886, 1213, 1311
BmrFI CCNGG 2 cut(s) 917, 1343
BmrI ACTGGG 1 cut(s) 1487
BmsI GCATC 5 cut(s) 161, 264, 297, 419, 839
BmuI ACTGGG 1 cut(s) 1487
BpmI CTGGAG 4 cut(s) 984, 1218, 1494, 1671
BsaJI CCNNGG 3 cut(s) 284, 311, 880
BsaWI WCCGGW 2 cut(s) 632, 803
BsaXI ACNNNNNCTCC 2 cut(s) 1301, 1331
Bsc4I CCNNNNNNNGG 4 cut(s) 554, 769, 906, 1221
Bse1I ACTGG 5 cut(s) 97, 198, 955, 1493, 1511
Bse3DI GCAATG 1 cut(s) 976
BseAI TCCGGA 1 cut(s) 632
BseBI CCWGG 2 cut(s) 917, 1343
BseDI CCNNGG 3 cut(s) 284, 311, 880
BseGI GGATG 9 cut(s) 49, 258, 280, 641, 896, 986, 1042, 1577, 1658
BseLI CCNNNNNNNGG 4 cut(s) 554, 769, 906, 1221
BseMI GCAATG 1 cut(s) 976
BseMII CTCAG 5 cut(s) 263, 359, 675, 1167, 1689
BseNI ACTGG 5 cut(s) 97, 198, 955, 1493, 1511
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 6 cut(s) 133, 136, 526, 781, 1069, 1298
BseYI CCCAGC 4 cut(s) 320, 1073, 1551, 1626
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 6 cut(s) 187, 289, 316, 529, 915, 984
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 633, 804
BslFI GGGAC 2 cut(s) 254, 1280
BslI CCNNNNNNNGG 4 cut(s) 554, 769, 906, 1221
BsmAI GTCTC 4 cut(s) 15, 472, 595, 1011
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 254, 1280
BsmI GAATGC 2 cut(s) 115, 523
BsnI GGCC 6 cut(s) 187, 289, 316, 529, 915, 984
Bsp13I TCCGGA 1 cut(s) 632
Bsp1407I TGTACA 1 cut(s) 1468
Bsp143I GATC 2 cut(s) 1150, 1453
BspACI CCGC 6 cut(s) 32, 184, 236, 239, 488, 1536
BspANI GGCC 6 cut(s) 187, 289, 316, 529, 915, 984
BspCNI CTCAG 5 cut(s) 262, 358, 676, 1168, 1690
BspEI TCCGGA 1 cut(s) 632
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 6 cut(s) 207, 340, 817, 886, 1213, 1311
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 1461
BspT107I GGYRCC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 976
BsrGI TGTACA 1 cut(s) 1468
BsrI ACTGG 5 cut(s) 97, 198, 955, 1493, 1511
BssECI CCNNGG 3 cut(s) 284, 311, 880
BssMI GATC 2 cut(s) 1150, 1453
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 2 cut(s) 311, 880
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 2 cut(s) 917, 1343
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 1468
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 6 cut(s) 249, 345, 684, 846, 1176, 1698
BstF5I GGATG 9 cut(s) 49, 258, 280, 641, 896, 986, 1042, 1577, 1658
BstFNI CGCG 1 cut(s) 184
BstKTI GATC 2 cut(s) 1153, 1456
BstMAI GTCTC 4 cut(s) 15, 472, 595, 1011
BstMBI GATC 2 cut(s) 1150, 1453
BstMWI GCNNNNNNNGC 5 cut(s) 621, 705, 794, 1079, 1514
BstNI CCWGG 2 cut(s) 917, 1343
BstSCI CCNGG 2 cut(s) 915, 1341
BstSFI CTRYAG 1 cut(s) 1068
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 6 cut(s) 133, 136, 526, 781, 1069, 1298
BstX2I RGATCY 1 cut(s) 1453
BstYI RGATCY 1 cut(s) 1453
BsuRI GGCC 6 cut(s) 187, 289, 316, 529, 915, 984
BtrI CACGTC 2 cut(s) 268, 1162
BtsCI GGATG 9 cut(s) 49, 258, 280, 641, 896, 986, 1042, 1577, 1658
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 365, 619, 1500
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 288, 983
CseI GACGC 1 cut(s) 963
CsiI ACCWGGT 1 cut(s) 1341
Csp6I GTAC 1 cut(s) 1469
CviAII CATG 1 cut(s) 551
CviQI GTAC 1 cut(s) 1469
DdeI CTNAG 6 cut(s) 249, 345, 684, 846, 1176, 1698
DpnI GATC 2 cut(s) 1152, 1455
DpnII GATC 2 cut(s) 1150, 1453
DraIII CACNNNGTG 1 cut(s) 554
EaeI YGGCCR 2 cut(s) 185, 913
Eco130I CCWWGG 2 cut(s) 311, 880
Eco147I AGGCCT 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 915, 1341
EcoT14I CCWWGG 2 cut(s) 311, 880
ErhI CCWWGG 2 cut(s) 311, 880
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 1 cut(s) 554
FaqI GGGAC 2 cut(s) 254, 1280
FatI CATG 1 cut(s) 550
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 8 cut(s) 147, 150, 185, 239, 540, 795, 1083, 1287
FokI GGATG 9 cut(s) 56, 245, 267, 648, 883, 973, 1049, 1564, 1645
Fsp4HI GCNGC 8 cut(s) 147, 150, 185, 239, 540, 795, 1083, 1287
FspBI CTAG 3 cut(s) 330, 543, 1457
GluI GCNGC 8 cut(s) 147, 150, 185, 239, 540, 795, 1083, 1287
GsaI CCCAGC 4 cut(s) 324, 1077, 1555, 1630
GsuI CTGGAG 4 cut(s) 984, 1218, 1494, 1671
HaeIII GGCC 6 cut(s) 187, 289, 316, 529, 915, 984
HapII CCGG 2 cut(s) 633, 804
HgaI GACGC 1 cut(s) 963
Hin1II CATG 1 cut(s) 554
HindIII AAGCTT 1 cut(s) 132
HpaII CCGG 2 cut(s) 633, 804
HphI GGTGA 5 cut(s) 23, 156, 593, 764, 1284
Hpy166II GTNNAC 4 cut(s) 371, 548, 557, 755
Hpy188III TCNNGA 6 cut(s) 503, 633, 863, 1235, 1446, 1457
Hpy8I GTNNAC 4 cut(s) 371, 548, 557, 755
Hpy99I CGWCG 2 cut(s) 217, 979
HpyAV CCTTC 7 cut(s) 11, 171, 272, 713, 846, 1557, 1632
HpyCH4IV ACGT 5 cut(s) 267, 459, 585, 1161, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 621, 705, 794, 1079, 1514
HpyF3I CTNAG 6 cut(s) 249, 345, 684, 846, 1176, 1698
HpySE526I ACGT 5 cut(s) 267, 459, 585, 1161, 1316
Hsp92II CATG 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 632
Kzo9I GATC 2 cut(s) 1150, 1453
LmnI GCTCC 5 cut(s) 806, 841, 1217, 1309, 1513
Lsp1109I GCAGC 6 cut(s) 133, 136, 526, 781, 1069, 1298
LweI GCATC 5 cut(s) 161, 264, 297, 419, 839
MabI ACCWGGT 1 cut(s) 1341
MaeI CTAG 3 cut(s) 330, 543, 1457
MaeII ACGT 5 cut(s) 267, 459, 585, 1161, 1316
MalI GATC 2 cut(s) 1152, 1455
MboI GATC 2 cut(s) 1150, 1453
MflI RGATCY 1 cut(s) 1453
MlsI TGGCCA 1 cut(s) 915
MluCI AATT 8 cut(s) 26, 192, 273, 301, 445, 1023, 1297, 1432
MluNI TGGCCA 1 cut(s) 915
MlyI GAGTC 2 cut(s) 68, 217
Mox20I TGGCCA 1 cut(s) 915
MroI TCCGGA 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 915
MseI TTAA 6 cut(s) 642, 1026, 1094, 1277, 1373, 1395
MslI CAYNNNNRTG 2 cut(s) 789, 1252
Msp20I TGGCCA 1 cut(s) 915
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 2 cut(s) 633, 804
MspR9I CCNGG 2 cut(s) 917, 1343
Mva1269I GAATGC 2 cut(s) 115, 523
MvaI CCWGG 2 cut(s) 917, 1343
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 5 cut(s) 621, 705, 794, 1079, 1514
NdeII GATC 2 cut(s) 1150, 1453
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 6 cut(s) 207, 340, 817, 886, 1213, 1311
NmuCI GTSAC 7 cut(s) 172, 581, 617, 1224, 1256, 1317, 1385
PceI AGGCCT 1 cut(s) 316
PctI GAATGC 2 cut(s) 115, 523
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 8 cut(s) 229, 293, 494, 511, 893, 1196, 1427, 1485
PflMI CCANNNNNTGG 2 cut(s) 554, 769
PkrI GCNGC 8 cut(s) 148, 151, 186, 240, 541, 796, 1084, 1288
PleI GAGTC 2 cut(s) 67, 217
PpsI GAGTC 2 cut(s) 67, 217
Psp1406I AACGTT 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 915, 1341
PspFI CCCAGC 4 cut(s) 320, 1073, 1551, 1626
PspGI CCWGG 2 cut(s) 915, 1341
PspN4I GGNNCC 6 cut(s) 207, 340, 817, 886, 1213, 1311
PspPI GGNCC 2 cut(s) 288, 983
PsuI RGATCY 1 cut(s) 1453
RsaI GTAC 1 cut(s) 1470
RsaNI GTAC 1 cut(s) 1469
RseI CAYNNNNRTG 2 cut(s) 789, 1252
SaqAI TTAA 6 cut(s) 642, 1026, 1094, 1277, 1373, 1395
SatI GCNGC 8 cut(s) 147, 150, 185, 239, 540, 795, 1083, 1287
Sau3AI GATC 2 cut(s) 1150, 1453
Sau96I GGNCC 2 cut(s) 288, 983
SchI GAGTC 2 cut(s) 68, 217
ScrFI CCNGG 2 cut(s) 917, 1343
SexAI ACCWGGT 1 cut(s) 1341
SfaNI GCATC 5 cut(s) 161, 264, 297, 419, 839
SfcI CTRYAG 1 cut(s) 1068
SmiMI CAYNNNNRTG 2 cut(s) 789, 1252
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 8 cut(s) 26, 192, 273, 301, 445, 1023, 1297, 1432
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 6 cut(s) 32, 184, 236, 239, 488, 1536
SspMI CTAG 3 cut(s) 330, 543, 1457
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 915, 1341
StyI CCWWGG 2 cut(s) 311, 880
TaiI ACGT 5 cut(s) 270, 462, 588, 1164, 1319
TaqI TCGA 4 cut(s) 84, 140, 305, 1488
TasI AATT 8 cut(s) 26, 192, 273, 301, 445, 1023, 1297, 1432
TatI WGTACW 1 cut(s) 1468
TauI GCSGC 2 cut(s) 187, 241
TfiI GAWTC 8 cut(s) 229, 293, 494, 511, 893, 1196, 1427, 1485
Tru1I TTAA 6 cut(s) 642, 1026, 1094, 1277, 1373, 1395
Tru9I TTAA 6 cut(s) 642, 1026, 1094, 1277, 1373, 1395
TscAI CASTG 3 cut(s) 365, 626, 1500
TseFI GTSAC 7 cut(s) 172, 581, 617, 1224, 1256, 1317, 1385
TseI GCWGC 6 cut(s) 146, 149, 539, 794, 1082, 1286
Tsp45I GTSAC 7 cut(s) 172, 581, 617, 1224, 1256, 1317, 1385
TspDTI ATGAA 4 cut(s) 80, 483, 885, 1667
TspGWI ACGGA 5 cut(s) 56, 523, 942, 1120, 1373
TspRI CASTG 3 cut(s) 365, 626, 1500
Van91I CCANNNNNTGG 2 cut(s) 554, 769
Vha464I CTTAAG 1 cut(s) 641
XapI RAATTY 2 cut(s) 26, 301
XbaI TCTAGA 1 cut(s) 1456
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 3 cut(s) 330, 543, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.