pycom02g03580

tesmin TSO1-like CXC

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
2401886 .. 2405914
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03580.3

Sequence Viewer

Length: 1254 bp
ATGGGGGAAGGCGACGGGGCCGATTCGGCTCCGAAGAAGACTCAATCGGATGCTGCAGCGGGCGCTGCCACGACGTCATCCTCGTCATCGATGAACGATGTTCCGGCGAGGAAGCTGGCGAGGCAGCTCGATTTCACGGTGTTTGGTAGCGCTCCGGCGAGTGTGGCGGTGCCTGAGCTTCCTAAGCCACCACTGCCGACCGTTGCGGTGCCACCGAGTCTGCCAAAGCCCCCCGTGGTGTCCGTGCCAGTGCCGGTGTCGTTGCCGCAGCAACCGCATACACTGAAGCCTGGGAAACCAGAATCCCCAAAATCGAGACCAAGACCCAATGTTGATGCAAAAGATGGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCTCGCTGCTTAAAGCTGTATTGCGAGTGTTTTGCATCTGGAATTTACTGTGACGGATGCAACTGCGTAAACTGTTGCAATAATGTTGAAAATGAAAGTGCTAGGAATGATGCAATTGAAGCTACTTTAGAGCGTAATCCAAATGCATTCAGGCCAAAAATTGCGAGTAGCCCTCATGGAGCAAGGGATACTCGGGAGGAAGCCGGCGAGGTTTTGATTTTGGGGAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTGAAGAAATACTGTGAATGCTTCCAAGCCAACATTCTCTGCTCGGAGAACTGCAAGTGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAAGCTCTATTCCACGGAGACCATGGCAACAACATGGCATATCTTCAACAGGCAGCAAATGCTGCCATTACTGGAGCTATAGGATCCTCTGGCTATGCATCATCACCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTTGGACCGACAGCAAAGGATCCATCATTACACCGGATTGGACAGTTTCAACAGGGAAACAATATCAGAGCCCCTGCACCCTCTCCGCTGTCTTCGGTCCCTGTTAATCACCTTGGTGGTACTACAGGATTAGGGCCTTCTAAGTTTACATACAGGTCTCTCCTAGCAGACATCATCCAACCACAGGACTTGAAGGAGCTTTGTTCGGTTTTGGTTGTAGTAGCTGAAGAAGCTGCAAACACACTTGCAGACCAAAGAAATACAGCAGGGAAGCCGACAGAAACTTCCCTTGCTTCAACGACACAAGACAGGTTGCAAAACGAAAAGGAATCTGATGCTCAGAATGCTGTGGCTGATCGATCGTTCTAG

Protein Analysis

418

Amino Acids

44.31

Weight (kDa)

8.51

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 77
AccB1I GGYRCC 3 cut(s) 169, 208, 645
AciI CCGC 6 cut(s) 59, 167, 206, 266, 275, 971
AclWI GGATC 4 cut(s) 822, 835, 899, 912
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 3 cut(s) 305, 671, 1131
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 2 cut(s) 349, 1006
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 1069
AgsI TTSAA 7 cut(s) 473, 503, 728, 791, 935, 1078, 1182
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AleI CACNNNNGTG 1 cut(s) 999
Alw26I GTCTC 4 cut(s) 310, 736, 756, 1047
AlwI GGATC 4 cut(s) 822, 835, 899, 912
Ama87I CYCGRG 1 cut(s) 576
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 3 cut(s) 18, 536, 1019
ApeKI GCWGC 9 cut(s) 53, 56, 65, 124, 268, 390, 797, 806, 1118
ApoI RAATTY 1 cut(s) 426
AspLEI GCGC 2 cut(s) 65, 152
AspS9I GGNCC 4 cut(s) 18, 890, 982, 1019
AsuHPI GGTGA 2 cut(s) 840, 986
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 2 cut(s) 890, 982
BamHI GGATCC 2 cut(s) 827, 904
BanI GGYRCC 3 cut(s) 169, 208, 645
BanII GRGCYC 1 cut(s) 958
BbsI GAAGAC 2 cut(s) 44, 969
BbvI GCAGC 9 cut(s) 40, 52, 68, 136, 280, 377, 793, 809, 1105
BccI CCATC 2 cut(s) 338, 916
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 2 cut(s) 565, 868
BcoDI GTCTC 4 cut(s) 310, 736, 756, 1047
BfaI CTAG 3 cut(s) 486, 1049, 1252
BfmI CTRYAG 3 cut(s) 54, 822, 1008
BfoI RGCGCY 2 cut(s) 66, 153
BfuI GTATCC 2 cut(s) 565, 868
BglI GCCNNNNNGGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 890, 982
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 4 cut(s) 18, 890, 982, 1019
BmiI GGNNCC 8 cut(s) 19, 30, 171, 210, 647, 829, 906, 984
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 8 cut(s) 40, 325, 428, 431, 484, 614, 851, 1210
BpiI GAAGAC 2 cut(s) 44, 969
BplI GAGNNNNNCTC 4 cut(s) 541, 573, 733, 765
BpmI CTGGAG 2 cut(s) 837, 837
Bpu10I CCTNAGC 2 cut(s) 174, 183
Bsa29I ATCGAT 2 cut(s) 89, 1243
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 3 cut(s) 310, 756, 1047
BsaJI CCNNGG 5 cut(s) 234, 290, 757, 766, 997
BsaWI WCCGGW 1 cut(s) 918
Bsc4I CCNNNNNNNGG 1 cut(s) 1069
Bse118I RCCGGY 2 cut(s) 253, 587
Bse1I ACTGG 3 cut(s) 248, 820, 854
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 2 cut(s) 89, 1243
BseDI CCNNGG 5 cut(s) 234, 290, 757, 766, 997
BseGI GGATG 5 cut(s) 55, 77, 446, 629, 1059
BseLI CCNNNNNNNGG 1 cut(s) 1069
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 165, 1238
BseNI ACTGG 3 cut(s) 248, 820, 854
BseXI GCAGC 9 cut(s) 40, 52, 68, 136, 280, 377, 793, 809, 1105
BsgI GTGCAG 1 cut(s) 945
Bsh1285I CGRYCG 2 cut(s) 201, 1247
BshFI GGCC 3 cut(s) 20, 538, 1021
BshNI GGYRCC 3 cut(s) 169, 208, 645
BshVI ATCGAT 2 cut(s) 89, 1243
BsiEI CGRYCG 2 cut(s) 201, 1247
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 5 cut(s) 104, 155, 254, 588, 919
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 1 cut(s) 1069
BsmAI GTCTC 4 cut(s) 310, 736, 756, 1047
BsmFI GGGAC 1 cut(s) 968
BsmI GAATGC 3 cut(s) 530, 671, 1234
BsnI GGCC 3 cut(s) 20, 538, 1021
Bso31I GGTCTC 3 cut(s) 310, 756, 1047
BsoBI CYCGRG 1 cut(s) 576
Bsp1286I GDGCHC 1 cut(s) 958
Bsp143I GATC 4 cut(s) 827, 904, 1240, 1244
Bsp19I CCATGG 1 cut(s) 766
BspACI CCGC 6 cut(s) 59, 167, 206, 266, 275, 971
BspANI GGCC 3 cut(s) 20, 538, 1021
BspCNI CTCAG 2 cut(s) 166, 1237
BspDI ATCGAT 2 cut(s) 89, 1243
BspLI GGNNCC 8 cut(s) 19, 30, 171, 210, 647, 829, 906, 984
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 4 cut(s) 822, 835, 899, 912
BspT107I GGYRCC 3 cut(s) 169, 208, 645
BspTNI GGTCTC 3 cut(s) 310, 756, 1047
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 2 cut(s) 253, 587
BsrI ACTGG 3 cut(s) 248, 820, 854
BssAI RCCGGY 2 cut(s) 253, 587
BssECI CCNNGG 5 cut(s) 234, 290, 757, 766, 997
BssMI GATC 4 cut(s) 827, 904, 1240, 1244
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 766, 997
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 8 cut(s) 139, 202, 369, 377, 434, 458, 662, 930
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 3 cut(s) 714, 803, 806
BstC8I GCNNGC 3 cut(s) 61, 117, 589
BstDEI CTNAG 5 cut(s) 174, 183, 354, 1026, 1224
BstDSI CCRYGG 3 cut(s) 234, 757, 766
BstF5I GGATG 5 cut(s) 55, 77, 446, 629, 1059
BstH2I RGCGCY 2 cut(s) 66, 153
BstHHI GCGC 2 cut(s) 65, 152
BstKTI GATC 4 cut(s) 830, 907, 1243, 1247
BstMAI GTCTC 4 cut(s) 310, 736, 756, 1047
BstMBI GATC 4 cut(s) 827, 904, 1240, 1244
BstMCI CGRYCG 2 cut(s) 201, 1247
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 3 cut(s) 54, 822, 1008
BstV1I GCAGC 9 cut(s) 40, 52, 68, 136, 280, 377, 793, 809, 1105
BstV2I GAAGAC 2 cut(s) 44, 969
BstX2I RGATCY 2 cut(s) 827, 904
BstYI RGATCY 2 cut(s) 827, 904
Bsu15I ATCGAT 2 cut(s) 89, 1243
BsuI GTATCC 2 cut(s) 565, 868
BsuRI GGCC 3 cut(s) 20, 538, 1021
BsuTUI ATCGAT 2 cut(s) 89, 1243
BtgI CCRYGG 3 cut(s) 234, 757, 766
BtsCI GGATG 5 cut(s) 55, 77, 446, 629, 1059
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 4 cut(s) 191, 255, 281, 374
Cac8I GCNNGC 3 cut(s) 61, 117, 589
CfoI GCGC 2 cut(s) 65, 152
Cfr10I RCCGGY 2 cut(s) 253, 587
Cfr13I GGNCC 4 cut(s) 18, 890, 982, 1019
ClaI ATCGAT 2 cut(s) 89, 1243
Csp6I GTAC 2 cut(s) 348, 1005
CspCI CAANNNNNGTGG 2 cut(s) 1056, 1091
CviAII CATG 4 cut(s) 560, 709, 767, 778
CviQI GTAC 2 cut(s) 348, 1005
DdeI CTNAG 5 cut(s) 174, 183, 354, 1026, 1224
DpnI GATC 4 cut(s) 829, 906, 1242, 1246
DpnII GATC 4 cut(s) 827, 904, 1240, 1244
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Eco130I CCWWGG 2 cut(s) 766, 997
Eco24I GRGCYC 1 cut(s) 958
Eco31I GGTCTC 3 cut(s) 310, 756, 1047
Eco47I GGWCC 2 cut(s) 890, 982
Eco47III AGCGCT 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 305, 671, 1131
Eco88I CYCGRG 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 766, 997
EcoT22I ATGCAT 2 cut(s) 532, 844
EcoT38I GRGCYC 1 cut(s) 958
ErhI CCWWGG 2 cut(s) 766, 997
FaeI CATG 4 cut(s) 563, 712, 770, 781
FaiI YATR 9 cut(s) 279, 561, 710, 768, 779, 784, 824, 840, 1036
FaqI GGGAC 1 cut(s) 968
FatI CATG 4 cut(s) 559, 708, 766, 777
FauI CCCGC 1 cut(s) 52
FokI GGATG 5 cut(s) 62, 64, 453, 636, 1046
FriOI GRGCYC 1 cut(s) 958
FspBI CTAG 3 cut(s) 486, 1049, 1252
GlaI GCGC 2 cut(s) 64, 151
GsuI CTGGAG 2 cut(s) 837, 837
HaeII RGCGCY 2 cut(s) 66, 153
HaeIII GGCC 3 cut(s) 20, 538, 1021
HapII CCGG 5 cut(s) 104, 155, 254, 588, 919
HhaI GCGC 2 cut(s) 65, 152
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 4 cut(s) 563, 712, 770, 781
Hin6I GCGC 2 cut(s) 63, 150
HinP1I GCGC 2 cut(s) 63, 150
HinfI GANTC 5 cut(s) 23, 40, 217, 302, 1214
HpaII CCGG 5 cut(s) 104, 155, 254, 588, 919
HphI GGTGA 2 cut(s) 840, 986
Hpy166II GTNNAC 3 cut(s) 380, 454, 1032
Hpy188I TCNGA 6 cut(s) 33, 49, 694, 953, 1219, 1227
Hpy188III TCNNGA 4 cut(s) 315, 423, 578, 878
Hpy8I GTNNAC 3 cut(s) 380, 454, 1032
Hpy99I CGWCG 2 cut(s) 17, 76
HpyAV CCTTC 3 cut(s) 722, 1032, 1072
HpyCH4III ACNGT 8 cut(s) 139, 202, 369, 377, 434, 458, 662, 930
HpyCH4IV ACGT 1 cut(s) 74
HpyF3I CTNAG 5 cut(s) 174, 183, 354, 1026, 1224
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 4 cut(s) 563, 712, 770, 781
HspAI GCGC 2 cut(s) 63, 150
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
Kzo9I GATC 4 cut(s) 827, 904, 1240, 1244
LmnI GCTCC 5 cut(s) 34, 157, 563, 818, 1081
Lsp1109I GCAGC 9 cut(s) 40, 52, 68, 136, 280, 377, 793, 809, 1105
LweI GCATC 8 cut(s) 40, 325, 428, 431, 484, 614, 851, 1210
MaeI CTAG 3 cut(s) 486, 1049, 1252
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 371, 434
MalI GATC 4 cut(s) 829, 906, 1242, 1246
MboI GATC 4 cut(s) 827, 904, 1240, 1244
MboII GAAGA 7 cut(s) 46, 49, 664, 749, 779, 969, 1124
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 827, 904
MhlI GDGCHC 1 cut(s) 958
MluCI AATT 3 cut(s) 426, 498, 543
MlyI GAGTC 2 cut(s) 34, 226
MmeI TCCRAC 1 cut(s) 1087
MnlI CCTC 9 cut(s) 91, 102, 114, 567, 574, 586, 841, 861, 976
Mph1103I ATGCAT 2 cut(s) 532, 844
MroNI GCCGGC 1 cut(s) 587
MseI TTAA 2 cut(s) 395, 990
MslI CAYNNNNRTG 1 cut(s) 999
MspA1I CMGCKG 2 cut(s) 59, 973
MspI CCGG 5 cut(s) 104, 155, 254, 588, 919
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 3 cut(s) 530, 671, 1234
MvaI CCWGG 1 cut(s) 291
NaeI GCCGGC 1 cut(s) 589
NcoI CCATGG 1 cut(s) 766
NdeII GATC 4 cut(s) 827, 904, 1240, 1244
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 4 cut(s) 563, 712, 770, 781
NlaIV GGNNCC 8 cut(s) 19, 30, 171, 210, 647, 829, 906, 984
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 532, 844
OliI CACNNNNGTG 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 3 cut(s) 530, 671, 1234
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 23, 302, 1214
Ple19I CGATCG 1 cut(s) 1247
PleI GAGTC 2 cut(s) 34, 225
PpsI GAGTC 2 cut(s) 34, 225
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 8 cut(s) 19, 30, 171, 210, 647, 829, 906, 984
PspPI GGNCC 4 cut(s) 18, 890, 982, 1019
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 2 cut(s) 827, 904
PvuI CGATCG 1 cut(s) 1247
RsaI GTAC 2 cut(s) 349, 1006
RsaNI GTAC 2 cut(s) 348, 1005
RseI CAYNNNNRTG 1 cut(s) 999
SaqAI TTAA 2 cut(s) 395, 990
Sau3AI GATC 4 cut(s) 827, 904, 1240, 1244
Sau96I GGNCC 4 cut(s) 18, 890, 982, 1019
SchI GAGTC 2 cut(s) 34, 226
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 8 cut(s) 40, 325, 428, 431, 484, 614, 851, 1210
SfcI CTRYAG 3 cut(s) 54, 822, 1008
SinI GGWCC 2 cut(s) 890, 982
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 3 cut(s) 426, 498, 543
SsiI CCGC 6 cut(s) 59, 167, 206, 266, 275, 971
SspMI CTAG 3 cut(s) 486, 1049, 1252
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 766, 997
TaaI ACNGT 8 cut(s) 139, 202, 369, 377, 434, 458, 662, 930
TaiI ACGT 1 cut(s) 77
TaqI TCGA 4 cut(s) 89, 129, 314, 1243
TaqII GACCGA 2 cut(s) 907, 970
TasI AATT 3 cut(s) 426, 498, 543
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 3 cut(s) 23, 302, 1214
Tru1I TTAA 2 cut(s) 395, 990
Tru9I TTAA 2 cut(s) 395, 990
TscAI CASTG 4 cut(s) 198, 255, 288, 374
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 9 cut(s) 53, 56, 65, 124, 268, 390, 797, 806, 1118
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 107, 492
TspGWI ACGGA 3 cut(s) 232, 453, 774
TspRI CASTG 4 cut(s) 198, 255, 288, 374
VpaK11BI GGWCC 2 cut(s) 890, 982
XapI RAATTY 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 764
XspI CTAG 3 cut(s) 486, 1049, 1252
ZraI GACGTC 1 cut(s) 75
Zsp2I ATGCAT 2 cut(s) 532, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.