tesmin TSO1-like CXC
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20110 AT2G20110 AT2G20110 AT4G29000 |
| fragaria_vesca | FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 |
| malus_domestica | MD02G1043000.v1.1 MD15G1181800.v1.1 |
| prunus_persica | Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 |
| pyrus_communis | pycom02g03580 pycom02g03590 pycom15g16400 |
| rosa_chinensis | RchiOBHm_Chr2g0089991 |
| rosa_laevigata | RLG00000016067 |
| rosa_multiflora | Rmu_sc0000226.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00151480 |
| rosa_rugosa | Rorug02G0004300 Rorug02G0004400 Rorug02G0004500 |
| rosa_samantha | Rh2AG049700 Rh2BG048400 Rh2CG050600 Rh2DG049900 |
| rosa_wichuraiana | Rw2G004080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 77 |
| AccB1I | GGYRCC | 3 cut(s) | 169, 208, 645 |
| AciI | CCGC | 6 cut(s) | 59, 167, 206, 266, 275, 971 |
| AclWI | GGATC | 4 cut(s) | 822, 835, 899, 912 |
| AcsI | RAATTY | 1 cut(s) | 426 |
| AcuI | CTGAAG | 3 cut(s) | 305, 671, 1131 |
| AcyI | GRCGYC | 1 cut(s) | 74 |
| AfaI | GTAC | 2 cut(s) | 349, 1006 |
| AfeI | AGCGCT | 1 cut(s) | 151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1069 |
| AgsI | TTSAA | 7 cut(s) | 473, 503, 728, 791, 935, 1078, 1182 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 666, 698 |
| AleI | CACNNNNGTG | 1 cut(s) | 999 |
| Alw26I | GTCTC | 4 cut(s) | 310, 736, 756, 1047 |
| AlwI | GGATC | 4 cut(s) | 822, 835, 899, 912 |
| Ama87I | CYCGRG | 1 cut(s) | 576 |
| Aor51HI | AGCGCT | 1 cut(s) | 151 |
| AoxI | GGCC | 3 cut(s) | 18, 536, 1019 |
| ApeKI | GCWGC | 9 cut(s) | 53, 56, 65, 124, 268, 390, 797, 806, 1118 |
| ApoI | RAATTY | 1 cut(s) | 426 |
| AspLEI | GCGC | 2 cut(s) | 65, 152 |
| AspS9I | GGNCC | 4 cut(s) | 18, 890, 982, 1019 |
| AsuHPI | GGTGA | 2 cut(s) | 840, 986 |
| AvaI | CYCGRG | 1 cut(s) | 576 |
| AvaII | GGWCC | 2 cut(s) | 890, 982 |
| BamHI | GGATCC | 2 cut(s) | 827, 904 |
| BanI | GGYRCC | 3 cut(s) | 169, 208, 645 |
| BanII | GRGCYC | 1 cut(s) | 958 |
| BbsI | GAAGAC | 2 cut(s) | 44, 969 |
| BbvI | GCAGC | 9 cut(s) | 40, 52, 68, 136, 280, 377, 793, 809, 1105 |
| BccI | CCATC | 2 cut(s) | 338, 916 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 398, 432 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BciVI | GTATCC | 2 cut(s) | 565, 868 |
| BcoDI | GTCTC | 4 cut(s) | 310, 736, 756, 1047 |
| BfaI | CTAG | 3 cut(s) | 486, 1049, 1252 |
| BfmI | CTRYAG | 3 cut(s) | 54, 822, 1008 |
| BfoI | RGCGCY | 2 cut(s) | 66, 153 |
| BfuI | GTATCC | 2 cut(s) | 565, 868 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 26 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 2 cut(s) | 890, 982 |
| BmeT110I | CYCGRG | 1 cut(s) | 576 |
| BmgT120I | GGNCC | 4 cut(s) | 18, 890, 982, 1019 |
| BmiI | GGNNCC | 8 cut(s) | 19, 30, 171, 210, 647, 829, 906, 984 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 8 cut(s) | 40, 325, 428, 431, 484, 614, 851, 1210 |
| BpiI | GAAGAC | 2 cut(s) | 44, 969 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 541, 573, 733, 765 |
| BpmI | CTGGAG | 2 cut(s) | 837, 837 |
| Bpu10I | CCTNAGC | 2 cut(s) | 174, 183 |
| Bsa29I | ATCGAT | 2 cut(s) | 89, 1243 |
| BsaHI | GRCGYC | 1 cut(s) | 74 |
| BsaI | GGTCTC | 3 cut(s) | 310, 756, 1047 |
| BsaJI | CCNNGG | 5 cut(s) | 234, 290, 757, 766, 997 |
| BsaWI | WCCGGW | 1 cut(s) | 918 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1069 |
| Bse118I | RCCGGY | 2 cut(s) | 253, 587 |
| Bse1I | ACTGG | 3 cut(s) | 248, 820, 854 |
| Bse3DI | GCAATG | 1 cut(s) | 628 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseCI | ATCGAT | 2 cut(s) | 89, 1243 |
| BseDI | CCNNGG | 5 cut(s) | 234, 290, 757, 766, 997 |
| BseGI | GGATG | 5 cut(s) | 55, 77, 446, 629, 1059 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1069 |
| BseMI | GCAATG | 1 cut(s) | 628 |
| BseMII | CTCAG | 2 cut(s) | 165, 1238 |
| BseNI | ACTGG | 3 cut(s) | 248, 820, 854 |
| BseXI | GCAGC | 9 cut(s) | 40, 52, 68, 136, 280, 377, 793, 809, 1105 |
| BsgI | GTGCAG | 1 cut(s) | 945 |
| Bsh1285I | CGRYCG | 2 cut(s) | 201, 1247 |
| BshFI | GGCC | 3 cut(s) | 20, 538, 1021 |
| BshNI | GGYRCC | 3 cut(s) | 169, 208, 645 |
| BshVI | ATCGAT | 2 cut(s) | 89, 1243 |
| BsiEI | CGRYCG | 2 cut(s) | 201, 1247 |
| BsiHKCI | CYCGRG | 1 cut(s) | 576 |
| BsiSI | CCGG | 5 cut(s) | 104, 155, 254, 588, 919 |
| BslFI | GGGAC | 1 cut(s) | 968 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1069 |
| BsmAI | GTCTC | 4 cut(s) | 310, 736, 756, 1047 |
| BsmFI | GGGAC | 1 cut(s) | 968 |
| BsmI | GAATGC | 3 cut(s) | 530, 671, 1234 |
| BsnI | GGCC | 3 cut(s) | 20, 538, 1021 |
| Bso31I | GGTCTC | 3 cut(s) | 310, 756, 1047 |
| BsoBI | CYCGRG | 1 cut(s) | 576 |
| Bsp1286I | GDGCHC | 1 cut(s) | 958 |
| Bsp143I | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| Bsp19I | CCATGG | 1 cut(s) | 766 |
| BspACI | CCGC | 6 cut(s) | 59, 167, 206, 266, 275, 971 |
| BspANI | GGCC | 3 cut(s) | 20, 538, 1021 |
| BspCNI | CTCAG | 2 cut(s) | 166, 1237 |
| BspDI | ATCGAT | 2 cut(s) | 89, 1243 |
| BspLI | GGNNCC | 8 cut(s) | 19, 30, 171, 210, 647, 829, 906, 984 |
| BspMAI | CTGCAG | 1 cut(s) | 58 |
| BspPI | GGATC | 4 cut(s) | 822, 835, 899, 912 |
| BspT107I | GGYRCC | 3 cut(s) | 169, 208, 645 |
| BspTNI | GGTCTC | 3 cut(s) | 310, 756, 1047 |
| BsrDI | GCAATG | 1 cut(s) | 628 |
| BsrFI | RCCGGY | 2 cut(s) | 253, 587 |
| BsrI | ACTGG | 3 cut(s) | 248, 820, 854 |
| BssAI | RCCGGY | 2 cut(s) | 253, 587 |
| BssECI | CCNNGG | 5 cut(s) | 234, 290, 757, 766, 997 |
| BssMI | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| BssNI | GRCGYC | 1 cut(s) | 74 |
| BssT1I | CCWWGG | 2 cut(s) | 766, 997 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 8 cut(s) | 139, 202, 369, 377, 434, 458, 662, 930 |
| Bst6I | CTCTTC | 1 cut(s) | 732 |
| BstACI | GRCGYC | 1 cut(s) | 74 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 714, 803, 806 |
| BstC8I | GCNNGC | 3 cut(s) | 61, 117, 589 |
| BstDEI | CTNAG | 5 cut(s) | 174, 183, 354, 1026, 1224 |
| BstDSI | CCRYGG | 3 cut(s) | 234, 757, 766 |
| BstF5I | GGATG | 5 cut(s) | 55, 77, 446, 629, 1059 |
| BstH2I | RGCGCY | 2 cut(s) | 66, 153 |
| BstHHI | GCGC | 2 cut(s) | 65, 152 |
| BstKTI | GATC | 4 cut(s) | 830, 907, 1243, 1247 |
| BstMAI | GTCTC | 4 cut(s) | 310, 736, 756, 1047 |
| BstMBI | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| BstMCI | CGRYCG | 2 cut(s) | 201, 1247 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstSFI | CTRYAG | 3 cut(s) | 54, 822, 1008 |
| BstV1I | GCAGC | 9 cut(s) | 40, 52, 68, 136, 280, 377, 793, 809, 1105 |
| BstV2I | GAAGAC | 2 cut(s) | 44, 969 |
| BstX2I | RGATCY | 2 cut(s) | 827, 904 |
| BstYI | RGATCY | 2 cut(s) | 827, 904 |
| Bsu15I | ATCGAT | 2 cut(s) | 89, 1243 |
| BsuI | GTATCC | 2 cut(s) | 565, 868 |
| BsuRI | GGCC | 3 cut(s) | 20, 538, 1021 |
| BsuTUI | ATCGAT | 2 cut(s) | 89, 1243 |
| BtgI | CCRYGG | 3 cut(s) | 234, 757, 766 |
| BtsCI | GGATG | 5 cut(s) | 55, 77, 446, 629, 1059 |
| BtsI | GCAGTG | 1 cut(s) | 191 |
| BtsIMutI | CAGTG | 4 cut(s) | 191, 255, 281, 374 |
| Cac8I | GCNNGC | 3 cut(s) | 61, 117, 589 |
| CfoI | GCGC | 2 cut(s) | 65, 152 |
| Cfr10I | RCCGGY | 2 cut(s) | 253, 587 |
| Cfr13I | GGNCC | 4 cut(s) | 18, 890, 982, 1019 |
| ClaI | ATCGAT | 2 cut(s) | 89, 1243 |
| Csp6I | GTAC | 2 cut(s) | 348, 1005 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1056, 1091 |
| CviAII | CATG | 4 cut(s) | 560, 709, 767, 778 |
| CviQI | GTAC | 2 cut(s) | 348, 1005 |
| DdeI | CTNAG | 5 cut(s) | 174, 183, 354, 1026, 1224 |
| DpnI | GATC | 4 cut(s) | 829, 906, 1242, 1246 |
| DpnII | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| Eam1104I | CTCTTC | 1 cut(s) | 732 |
| EarI | CTCTTC | 1 cut(s) | 732 |
| Eco130I | CCWWGG | 2 cut(s) | 766, 997 |
| Eco24I | GRGCYC | 1 cut(s) | 958 |
| Eco31I | GGTCTC | 3 cut(s) | 310, 756, 1047 |
| Eco47I | GGWCC | 2 cut(s) | 890, 982 |
| Eco47III | AGCGCT | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 3 cut(s) | 305, 671, 1131 |
| Eco88I | CYCGRG | 1 cut(s) | 576 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1019 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 2 cut(s) | 766, 997 |
| EcoT22I | ATGCAT | 2 cut(s) | 532, 844 |
| EcoT38I | GRGCYC | 1 cut(s) | 958 |
| ErhI | CCWWGG | 2 cut(s) | 766, 997 |
| FaeI | CATG | 4 cut(s) | 563, 712, 770, 781 |
| FaiI | YATR | 9 cut(s) | 279, 561, 710, 768, 779, 784, 824, 840, 1036 |
| FaqI | GGGAC | 1 cut(s) | 968 |
| FatI | CATG | 4 cut(s) | 559, 708, 766, 777 |
| FauI | CCCGC | 1 cut(s) | 52 |
| FokI | GGATG | 5 cut(s) | 62, 64, 453, 636, 1046 |
| FriOI | GRGCYC | 1 cut(s) | 958 |
| FspBI | CTAG | 3 cut(s) | 486, 1049, 1252 |
| GlaI | GCGC | 2 cut(s) | 64, 151 |
| GsuI | CTGGAG | 2 cut(s) | 837, 837 |
| HaeII | RGCGCY | 2 cut(s) | 66, 153 |
| HaeIII | GGCC | 3 cut(s) | 20, 538, 1021 |
| HapII | CCGG | 5 cut(s) | 104, 155, 254, 588, 919 |
| HhaI | GCGC | 2 cut(s) | 65, 152 |
| Hin1I | GRCGYC | 1 cut(s) | 74 |
| Hin1II | CATG | 4 cut(s) | 563, 712, 770, 781 |
| Hin6I | GCGC | 2 cut(s) | 63, 150 |
| HinP1I | GCGC | 2 cut(s) | 63, 150 |
| HinfI | GANTC | 5 cut(s) | 23, 40, 217, 302, 1214 |
| HpaII | CCGG | 5 cut(s) | 104, 155, 254, 588, 919 |
| HphI | GGTGA | 2 cut(s) | 840, 986 |
| Hpy166II | GTNNAC | 3 cut(s) | 380, 454, 1032 |
| Hpy188I | TCNGA | 6 cut(s) | 33, 49, 694, 953, 1219, 1227 |
| Hpy188III | TCNNGA | 4 cut(s) | 315, 423, 578, 878 |
| Hpy8I | GTNNAC | 3 cut(s) | 380, 454, 1032 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 76 |
| HpyAV | CCTTC | 3 cut(s) | 722, 1032, 1072 |
| HpyCH4III | ACNGT | 8 cut(s) | 139, 202, 369, 377, 434, 458, 662, 930 |
| HpyCH4IV | ACGT | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 183, 354, 1026, 1224 |
| HpySE526I | ACGT | 1 cut(s) | 74 |
| Hsp92I | GRCGYC | 1 cut(s) | 74 |
| Hsp92II | CATG | 4 cut(s) | 563, 712, 770, 781 |
| HspAI | GCGC | 2 cut(s) | 63, 150 |
| KroI | GCCGGC | 1 cut(s) | 587 |
| KroNI | GCCGGC | 1 cut(s) | 589 |
| Kzo9I | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| LmnI | GCTCC | 5 cut(s) | 34, 157, 563, 818, 1081 |
| Lsp1109I | GCAGC | 9 cut(s) | 40, 52, 68, 136, 280, 377, 793, 809, 1105 |
| LweI | GCATC | 8 cut(s) | 40, 325, 428, 431, 484, 614, 851, 1210 |
| MaeI | CTAG | 3 cut(s) | 486, 1049, 1252 |
| MaeII | ACGT | 1 cut(s) | 74 |
| MaeIII | GTNAC | 2 cut(s) | 371, 434 |
| MalI | GATC | 4 cut(s) | 829, 906, 1242, 1246 |
| MboI | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| MboII | GAAGA | 7 cut(s) | 46, 49, 664, 749, 779, 969, 1124 |
| MfeI | CAATTG | 1 cut(s) | 498 |
| MflI | RGATCY | 2 cut(s) | 827, 904 |
| MhlI | GDGCHC | 1 cut(s) | 958 |
| MluCI | AATT | 3 cut(s) | 426, 498, 543 |
| MlyI | GAGTC | 2 cut(s) | 34, 226 |
| MmeI | TCCRAC | 1 cut(s) | 1087 |
| MnlI | CCTC | 9 cut(s) | 91, 102, 114, 567, 574, 586, 841, 861, 976 |
| Mph1103I | ATGCAT | 2 cut(s) | 532, 844 |
| MroNI | GCCGGC | 1 cut(s) | 587 |
| MseI | TTAA | 2 cut(s) | 395, 990 |
| MslI | CAYNNNNRTG | 1 cut(s) | 999 |
| MspA1I | CMGCKG | 2 cut(s) | 59, 973 |
| MspI | CCGG | 5 cut(s) | 104, 155, 254, 588, 919 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MunI | CAATTG | 1 cut(s) | 498 |
| Mva1269I | GAATGC | 3 cut(s) | 530, 671, 1234 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| NaeI | GCCGGC | 1 cut(s) | 589 |
| NcoI | CCATGG | 1 cut(s) | 766 |
| NdeII | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| NgoMIV | GCCGGC | 1 cut(s) | 587 |
| NlaIII | CATG | 4 cut(s) | 563, 712, 770, 781 |
| NlaIV | GGNNCC | 8 cut(s) | 19, 30, 171, 210, 647, 829, 906, 984 |
| NmuCI | GTSAC | 1 cut(s) | 434 |
| NsiI | ATGCAT | 2 cut(s) | 532, 844 |
| OliI | CACNNNNGTG | 1 cut(s) | 999 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 80 |
| PctI | GAATGC | 3 cut(s) | 530, 671, 1234 |
| PdiI | GCCGGC | 1 cut(s) | 589 |
| PfeI | GAWTC | 3 cut(s) | 23, 302, 1214 |
| Ple19I | CGATCG | 1 cut(s) | 1247 |
| PleI | GAGTC | 2 cut(s) | 34, 225 |
| PpsI | GAGTC | 2 cut(s) | 34, 225 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 8 cut(s) | 19, 30, 171, 210, 647, 829, 906, 984 |
| PspPI | GGNCC | 4 cut(s) | 18, 890, 982, 1019 |
| PstI | CTGCAG | 1 cut(s) | 58 |
| PsuI | RGATCY | 2 cut(s) | 827, 904 |
| PvuI | CGATCG | 1 cut(s) | 1247 |
| RsaI | GTAC | 2 cut(s) | 349, 1006 |
| RsaNI | GTAC | 2 cut(s) | 348, 1005 |
| RseI | CAYNNNNRTG | 1 cut(s) | 999 |
| SaqAI | TTAA | 2 cut(s) | 395, 990 |
| Sau3AI | GATC | 4 cut(s) | 827, 904, 1240, 1244 |
| Sau96I | GGNCC | 4 cut(s) | 18, 890, 982, 1019 |
| SchI | GAGTC | 2 cut(s) | 34, 226 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 958 |
| SfaNI | GCATC | 8 cut(s) | 40, 325, 428, 431, 484, 614, 851, 1210 |
| SfcI | CTRYAG | 3 cut(s) | 54, 822, 1008 |
| SinI | GGWCC | 2 cut(s) | 890, 982 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 999 |
| Sse9I | AATT | 3 cut(s) | 426, 498, 543 |
| SsiI | CCGC | 6 cut(s) | 59, 167, 206, 266, 275, 971 |
| SspMI | CTAG | 3 cut(s) | 486, 1049, 1252 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 2 cut(s) | 766, 997 |
| TaaI | ACNGT | 8 cut(s) | 139, 202, 369, 377, 434, 458, 662, 930 |
| TaiI | ACGT | 1 cut(s) | 77 |
| TaqI | TCGA | 4 cut(s) | 89, 129, 314, 1243 |
| TaqII | GACCGA | 2 cut(s) | 907, 970 |
| TasI | AATT | 3 cut(s) | 426, 498, 543 |
| TauI | GCSGC | 1 cut(s) | 268 |
| TfiI | GAWTC | 3 cut(s) | 23, 302, 1214 |
| Tru1I | TTAA | 2 cut(s) | 395, 990 |
| Tru9I | TTAA | 2 cut(s) | 395, 990 |
| TscAI | CASTG | 4 cut(s) | 198, 255, 288, 374 |
| TseFI | GTSAC | 1 cut(s) | 434 |
| TseI | GCWGC | 9 cut(s) | 53, 56, 65, 124, 268, 390, 797, 806, 1118 |
| Tsp45I | GTSAC | 1 cut(s) | 434 |
| TspDTI | ATGAA | 2 cut(s) | 107, 492 |
| TspGWI | ACGGA | 3 cut(s) | 232, 453, 774 |
| TspRI | CASTG | 4 cut(s) | 198, 255, 288, 374 |
| VpaK11BI | GGWCC | 2 cut(s) | 890, 982 |
| XapI | RAATTY | 1 cut(s) | 426 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 764 |
| XspI | CTAG | 3 cut(s) | 486, 1049, 1252 |
| ZraI | GACGTC | 1 cut(s) | 75 |
| Zsp2I | ATGCAT | 2 cut(s) | 532, 844 |