Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003177

Physical Location & Seq

Genomic Coordinates Reverse (-)

498339 .. 500107

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAAGCAGTGGCTATAGAGCTCACGTTTTAGCAATTCCTTATCCATCTCAAGGCCACATAAACCCGCTACTCCAATTCTCCAAACGCCTGGCCTCTTCTAAGGGCCTCAAAGTGACCCTGGCCAATACCATCTTCATCGCCAACTCTTTGAACCTACCCAAATCGGCAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCCCTAGCTGAAAGCATCGCCGCCTATCTATCCCGTTTAGAAGCCGAGGGCTCCAAATCCGTAGCTGAGATCATTACAAGGCACAAGTCAACACCAAACCCTATTGACTGCATAATTTATGACCCCTTCTTGCCTTGGGCTTTGGATGTAGCTAAACAATTTGGTCTAGCCACTGCTGCCTTCTTTACTCAAACCTGCGCCGTTAATTACACTTACTATCTTGAGCATCATCATGGACTAATTAGGAATCCAGCTTCTCCTCCTAATAATCTTCCTCTCGGACTGCATATTCTTGAACCTCAAGATATGCCGTCCTTCTTTTCAGTGCCGGGCTCGTATCCAGCTTACTTTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATTTTCGCCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCGATGTCTCAAGTTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACGACAAGGAGTATGGGCTTCATCTCTTCGAGATAGACTCGGCTTGCACCGACTGGCTCAACACCAAGCCAGCAGGCTCTGTCGTGTACGTAGCCTTTGGTAGTATGGCCAATCTGAGTGACAAGCAAATGCAGGAACTTGCCTTGGGCTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGATTCCGAAGAGGCAAAGCTTCCAGAAAAATTCAAAGAAGAGATGGCCGAAAAAGGCTTGTTAGTGAATTGGAGCCCTCAGCTCGAAGTGCTGTCACACGAAGCAGTAGGGTGTTTTTTCACTCACGGTGGGTGGAATTCGACGATTGAAGCATTAAGCTTGGGAGTGTCGATGGTTGTAATGCCACAGTGGACCGACCAGCCTACTAATTCCAAATTGGTTGAGGGTCTTTGGAAGGTTGGAGTTAGAGTAACGGTTGATCAGAATAGTGGGTTGGTTGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGGAGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGTGAGGGGGGCACCTCGGATAAGAATATTGATGAATTTGTATCGAAGTTGGTAATTGCTAAGCCAGCCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

462

Amino Acids

51.02

Weight (kDa)

5.09

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 44	4e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	267 - 395	1e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20110 AT2G20110 AT2G20110 AT4G29000
fragaria_vesca	FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340
malus_domestica	MD02G1043000.v1.1 MD15G1181800.v1.1
prunus_persica	Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1
pyrus_communis	pycom02g03580 pycom02g03590 pycom15g16400
rosa_chinensis	RchiOBHm_Chr2g0089991
rosa_laevigata	RLG00000016067
rosa_multiflora	Rmu_sc0000226.1_g000019
rosa_roxburghii	Rroxscaffold_2G00151480
rosa_rugosa	Rorug02G0004300 Rorug02G0004400 Rorug02G0004500
rosa_samantha	Rh2AG049700 Rh2BG048400 Rh2CG050600 Rh2DG049900
rosa_wichuraiana	Rw2G004080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	1322
AciI	CCGC	3 cut(s)	68, 216, 243
AcoI	YGGCCR	3 cut(s)	123, 846, 972
AcsI	RAATTY	3 cut(s)	956, 1063, 1346
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	154, 518, 586, 892, 961, 1076, 1262
AjnI	CCWGG	2 cut(s)	90, 120
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 1184, 1216
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	3 cut(s)	182, 675, 732
AlwNI	CAGNNNCTG	1 cut(s)	818
AoxI	GGCC	7 cut(s)	55, 93, 106, 123, 698, 846, 972
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	3 cut(s)	956, 1063, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	106, 698, 1119
AsuC2I	CCSGG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	1119
BaeGI	GKGCMC	1 cut(s)	1325
BalI	TGGCCA	2 cut(s)	125, 848
BanI	GGYRCC	1 cut(s)	1322
BanII	GRGCYC	4 cut(s)	25, 275, 557, 1004
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	1005
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	8 cut(s)	55, 140, 194, 571, 718, 964, 1093, 1237
BceAI	ACGGC	3 cut(s)	229, 407, 517
BciT130I	CCWGG	2 cut(s)	92, 122
BciVI	GTATCC	1 cut(s)	570
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	182, 675, 732
BfaI	CTAG	2 cut(s)	227, 389
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	3 cut(s)	217, 243, 399
BlpI	GCTNAGC	1 cut(s)	1371
BlsI	GCNGC	3 cut(s)	218, 244, 400
Bme1390I	CCNGG	3 cut(s)	92, 122, 552
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	3 cut(s)	106, 698, 1119
BmiI	GGNNCC	4 cut(s)	175, 274, 1001, 1324
BmrFI	CCNGG	3 cut(s)	92, 122, 552
BmsI	GCATC	3 cut(s)	246, 457, 741
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu10I	CCTNAGC	1 cut(s)	1005
Bpu1102I	GCTNAGC	1 cut(s)	1371
BpuEI	CTTGAG	5 cut(s)	36, 206, 464, 507, 657
BpuMI	CCSGG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	829
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	5 cut(s)	120, 267, 356, 882, 1326
BsaXI	ACNNNNNCTCC	2 cut(s)	1161, 1191
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	797
BseBI	CCWGG	2 cut(s)	92, 122
BseDI	CCNNGG	5 cut(s)	120, 267, 356, 882, 1326
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	279, 845, 1019
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	471, 1265
BseSI	GKGCMC	1 cut(s)	1325
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BshNI	GGYRCC	1 cut(s)	1322
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	182, 675, 732
BsmBI	CGTCTC	1 cut(s)	732
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
Bsp143I	GATC	2 cut(s)	291, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1371
BspACI	CCGC	3 cut(s)	68, 216, 243
BspANI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BspCNI	CTCAG	3 cut(s)	280, 846, 1018
BspLI	GGNNCC	4 cut(s)	175, 274, 1001, 1324
BspMI	ACCTGC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	1322
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	5 cut(s)	120, 267, 356, 882, 1326
BssMI	GATC	2 cut(s)	291, 1186
BssT1I	CCWWGG	2 cut(s)	356, 882
Bst2UI	CCWGG	2 cut(s)	92, 122
Bst4CI	ACNGT	3 cut(s)	1055, 1116, 1183
Bst6I	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	8 cut(s)	7, 172, 784, 810, 814, 1296, 1377, 1381
BstDEI	CTNAG	5 cut(s)	102, 288, 854, 1005, 1371
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	294, 1189
BstMAI	GTCTC	3 cut(s)	182, 675, 732
BstMBI	GATC	2 cut(s)	291, 1186
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 1015, 1304, 1376
BstNI	CCWGG	2 cut(s)	92, 122
BstSCI	CCNGG	3 cut(s)	90, 120, 550
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	1325
BstSNI	TACGTA	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BtgZI	GCGATG	2 cut(s)	124, 223
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	3 cut(s)	16, 393, 1314
BtsIMutI	CAGTG	5 cut(s)	16, 393, 552, 1121, 1314
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	8 cut(s)	7, 172, 784, 810, 814, 1296, 1377, 1381
CaiI	CAGNNNCTG	1 cut(s)	818
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	106, 698, 1119
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	5 cut(s)	102, 288, 854, 1005, 1371
DpnI	GATC	2 cut(s)	293, 1188
DpnII	GATC	2 cut(s)	291, 1186
EaeI	YGGCCR	3 cut(s)	123, 846, 972
Eam1104I	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
EarI	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
Ecl136II	GAGCTC	1 cut(s)	23
Eco105I	TACGTA	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	356, 882
Eco24I	GRGCYC	4 cut(s)	25, 275, 557, 1004
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	2 cut(s)	90, 120
EcoT14I	CCWWGG	2 cut(s)	356, 882
EcoT38I	GRGCYC	4 cut(s)	25, 275, 557, 1004
ErhI	CCWWGG	2 cut(s)	356, 882
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	1 cut(s)	458
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	3 cut(s)	217, 243, 399
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	4 cut(s)	25, 275, 557, 1004
Fsp4HI	GCNGC	3 cut(s)	217, 243, 399
FspBI	CTAG	2 cut(s)	227, 389
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	3 cut(s)	217, 243, 399
HaeIII	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
HapII	CCGG	1 cut(s)	551
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	2 cut(s)	312, 690
HindII	GTYRAC	2 cut(s)	312, 690
HindIII	AAGCTT	2 cut(s)	944, 1084
HinfI	GANTC	4 cut(s)	469, 662, 776, 929
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	4 cut(s)	312, 690, 826, 1119
Hpy188I	TCNGA	7 cut(s)	199, 503, 737, 855, 934, 1191, 1330
Hpy188III	TCNNGA	5 cut(s)	443, 515, 524, 769, 950
Hpy8I	GTNNAC	4 cut(s)	312, 690, 826, 1119
Hpy99I	CGWCG	1 cut(s)	1072
HpyAV	CCTTC	5 cut(s)	358, 412, 547, 886, 1156
HpyCH4III	ACNGT	3 cut(s)	1055, 1116, 1183
HpyCH4IV	ACGT	2 cut(s)	27, 828
HpyCH4V	TGCA	5 cut(s)	333, 508, 786, 871, 1230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 1015, 1304, 1376
HpyF3I	CTNAG	5 cut(s)	102, 288, 854, 1005, 1371
HpySE526I	ACGT	2 cut(s)	27, 828
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	2 cut(s)	291, 1186
LmnI	GCTCC	4 cut(s)	179, 278, 999, 1291
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	246, 457, 741
MaeI	CTAG	2 cut(s)	227, 389
MaeII	ACGT	2 cut(s)	27, 828
MaeIII	GTNAC	4 cut(s)	115, 857, 1020, 1177
MalI	GATC	2 cut(s)	293, 1188
MboI	GATC	2 cut(s)	291, 1186
MboII	GAAGA	9 cut(s)	90, 127, 485, 662, 757, 947, 977, 1221, 1226
MhlI	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
MlsI	TGGCCA	2 cut(s)	125, 848
MluNI	TGGCCA	2 cut(s)	125, 848
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	3 cut(s)	205, 1147, 1186
Mox20I	TGGCCA	2 cut(s)	125, 848
MroXI	GAANNNNTTC	1 cut(s)	590
MscI	TGGCCA	2 cut(s)	125, 848
MseI	TTAA	2 cut(s)	426, 1082
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	2 cut(s)	125, 848
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	3 cut(s)	92, 122, 552
Mva1269I	GAATGC	1 cut(s)	1279
MvaI	CCWGG	2 cut(s)	92, 122
MwoI	GCNNNNNNNGC	4 cut(s)	398, 1015, 1304, 1376
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	291, 1186
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	4 cut(s)	175, 274, 1001, 1324
NmeAIII	GCCGAG	2 cut(s)	292, 758
NmuCI	GTSAC	3 cut(s)	115, 857, 1020
PctI	GAATGC	1 cut(s)	1279
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	469, 662, 929
PkrI	GCNGC	3 cut(s)	218, 244, 400
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
Ppu21I	YACGTR	1 cut(s)	829
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	90, 120
PspGI	CCWGG	2 cut(s)	90, 120
PspN4I	GGNNCC	4 cut(s)	175, 274, 1001, 1324
PspPI	GGNCC	3 cut(s)	106, 698, 1119
PstNI	CAGNNNCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	426, 1082
SatI	GCNGC	3 cut(s)	217, 243, 399
Sau3AI	GATC	2 cut(s)	291, 1186
Sau96I	GGNCC	3 cut(s)	106, 698, 1119
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	3 cut(s)	92, 122, 552
SduI	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
SfaNI	GCATC	3 cut(s)	246, 457, 741
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	5 cut(s)	51, 185, 443, 522, 672
SmoI	CTYRAG	5 cut(s)	51, 185, 443, 522, 672
SnaBI	TACGTA	1 cut(s)	829
SsiI	CCGC	3 cut(s)	68, 216, 243
SspI	AATATT	1 cut(s)	1339
SspMI	CTAG	2 cut(s)	227, 389
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	90, 120, 550
StyI	CCWWGG	2 cut(s)	356, 882
TaaI	ACNGT	3 cut(s)	1055, 1116, 1183
TaiI	ACGT	2 cut(s)	30, 831
TaqI	TCGA	6 cut(s)	665, 768, 1011, 1067, 1097, 1355
TaqII	GACCGA	1 cut(s)	1136
TauI	GCSGC	2 cut(s)	219, 245
TfiI	GAWTC	3 cut(s)	469, 662, 929
Tru1I	TTAA	2 cut(s)	426, 1082
Tru9I	TTAA	2 cut(s)	426, 1082
TscAI	CASTG	5 cut(s)	16, 400, 552, 1121, 1314
TseFI	GTSAC	3 cut(s)	115, 857, 1020
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	3 cut(s)	115, 857, 1020
TspDTI	ATGAA	6 cut(s)	127, 607, 749, 1280, 1286, 1359
TspGWI	ACGGA	2 cut(s)	166, 271
TspRI	CASTG	5 cut(s)	16, 400, 552, 1121, 1314
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	3 cut(s)	956, 1063, 1346
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	2 cut(s)	227, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.