Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003177

Physical Location & Seq

Genomic Coordinates Forward (+)

2405988 .. 2406638

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCTCCCGGAACTTTGGCATTGATGTGTGATGAGCAAGATACAATGTTCATGTCAGCTGCTTCTAATGGGTTAATGGGCGATGGTAACACATCTTCACGGTTACCTAGTGCACAAGGAATGACAGAAGTCTACGCAGAACAGGAAAGGATTGTCTTGACGAAATTCCGAGATTGTCTTAACAGGCTCATCACTTTTGGTGAAATAAAAGAAACGAAGTGCTCATCTTTAGCCAGAAGTGAAGCGGAGACTCAAAAAGACCAACACAGCAATGGCAGTACAAACGCAAGAATAGATTCGCAGACTGCGCAGGGACCAATTACCAACGGTGTTACAAAACCTGTTGTTCCACTCGCAGCCAAGACAACGACATCACAGACGGTTACTGCAGCAGTCTCAGCCCTTAGTAAAACTCCCTCCCATCCGGAAAACGGAGATGGGAGACCAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

152

Amino Acids

15.98

Weight (kDa)

6.1

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20110 AT2G20110 AT2G20110 AT4G29000
fragaria_vesca	FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340 FvH4_1g04340
malus_domestica	MD02G1043000.v1.1 MD15G1181800.v1.1
prunus_persica	Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1 Prupe.7G233800_v2.0.a1
pyrus_communis	pycom02g03580 pycom02g03590 pycom15g16400
rosa_chinensis	RchiOBHm_Chr2g0089991
rosa_laevigata	RLG00000016067
rosa_multiflora	Rmu_sc0000226.1_g000019
rosa_roxburghii	Rroxscaffold_2G00151480
rosa_rugosa	Rorug02G0004300 Rorug02G0004400 Rorug02G0004500
rosa_samantha	Rh2AG049700 Rh2BG048400 Rh2CG050600 Rh2DG049900
rosa_wichuraiana	Rw2G004080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	59, 452
AluI	AGCT	2 cut(s)	59, 452
Alw21I	GWGCWC	2 cut(s)	115, 224
Alw26I	GTCTC	4 cut(s)	9, 242, 400, 436
Alw44I	GTGCAC	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	59, 356, 389
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
Bbv12I	GWGCWC	2 cut(s)	115, 224
BbvI	GCAGC	3 cut(s)	46, 368, 401
BccI	CCATC	3 cut(s)	77, 429, 431
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	4 cut(s)	9, 242, 400, 436
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	3 cut(s)	60, 357, 390
BlsI	GCNGC	3 cut(s)	61, 358, 391
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	277
BseAI	TCCGGA	1 cut(s)	424
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	46, 368, 401
BsiHKAI	GWGCWC	2 cut(s)	115, 224
BsiSI	CCGG	2 cut(s)	9, 425
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	4 cut(s)	9, 242, 400, 436
BsmFI	GGGAC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	115, 224
Bsp13I	TCCGGA	1 cut(s)	424
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	410
BspEI	TCCGGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	102, 329, 382
BstDEI	CTNAG	2 cut(s)	397, 404
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	310
BstMAI	GTCTC	4 cut(s)	9, 242, 400, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 398
BstPAI	GACNNNNGTC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	46, 368, 401
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	421
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	59, 187, 233, 359, 401, 452
CviKI_1	RGCY	6 cut(s)	59, 187, 233, 359, 401, 452
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	397, 404
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	102
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	60, 357, 390
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	60, 357, 390
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	60, 357, 390
HapII	CCGG	2 cut(s)	9, 425
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	2 cut(s)	250, 296
HpaII	CCGG	2 cut(s)	9, 425
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	113, 133
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	157, 425
Hpy8I	GTNNAC	2 cut(s)	113, 133
HpyCH4III	ACNGT	3 cut(s)	102, 329, 382
HpyCH4V	TGCA	2 cut(s)	113, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 398
HpyF3I	CTNAG	2 cut(s)	397, 404
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	424
LpnPI	CCDG	7 cut(s)	22, 128, 169, 247, 296, 354, 438
Lsp1109I	GCAGC	3 cut(s)	46, 368, 401
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	4 cut(s)	86, 102, 331, 382
MboII	GAAGA	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	115, 224
MluCI	AATT	2 cut(s)	164, 318
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	2 cut(s)	74, 180
MslI	CAYNNNNRTG	2 cut(s)	25, 270
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	9, 425
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	307, 398
NciI	CCSGG	1 cut(s)	9
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	61, 358, 391
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	2 cut(s)	25, 270
SaqAI	TTAA	2 cut(s)	74, 180
SatI	GCNGC	3 cut(s)	60, 357, 390
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	115, 224
SetI	ASST	4 cut(s)	61, 109, 343, 454
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	25, 270
Sse9I	AATT	2 cut(s)	164, 318
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	102, 329, 382
TasI	AATT	2 cut(s)	164, 318
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	74, 180
Tru9I	TTAA	2 cut(s)	74, 180
TseI	GCWGC	3 cut(s)	59, 356, 389
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.