AT4G29000

tesmin tso1-like cxc

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14293513 .. 14297066
3554 bp
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UTR
Exon/CDS
Intron
AT4G29000.1

Sequence Viewer

Length: 1812 bp
ATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGACGGTGTTGAAGAGGGTTTTCCGACGAAGAAGCCAGCAAGGCAGCTCGACTTCACTGGTGGCTCCGATGAACATTCACTGTCTAAACCAGCGGCTCCTACCGTCGTAGCTACGTCGGTGAAACCCATCATTAGTAGCTCTGTCCCTTCGACGATACGGCCGGGTATGACCATAGCAATCGGTCAGGTTACTCAGGTACGACCGACGTTACCAATGGCGACGACGATGTCAAATCCGCCGTCACAGTCACAAATCGTTAACGCGCCAATTAGGCATCCGATACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCTAATGTGGAAGGTAGAGATGGAACCCCTCAAAAGAAGAAGCAGTGTAACTGTAAACACTCACGCTGCTTGAAATTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTTGTAACTGTGTAAATTGTTTCAACAATGTTGATAATGAACCTGCTAGACGAGAAGCTGTGGAAGCAACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGGGCGGGATAAAAGGGAGGATATCGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGCCACTGCAAAAAATCAGGATGCCTTAAGAAGTATTGCGAGTGCTTTCAAGCAAATATTCTTTGTTCCGAGAACTGCAAATGCTTGGATTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAAGCTTTGTTTCACGGTGAACATTCCAACCACATGGCTTATCTTCAACAAGCAGCAAATGCAGCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGGAAAGGTCAAGAGATTTTGTTCAACCAAGCAATTAAAGATTCATCTAGGCTTAGCCACTTTCCACAGGTAAATAATGGAAGAACTGGTGGACCAACCTCAGGCACATCTCCATCACCTGTTTCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGGGTGGACGATCAAACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCTCAAGGCAATAACAATGCAGCTGATGTGGAGATGGTTGCAACTGATCATAATCAAGCTGATAAGTCTGGACCAGAGGAATCCAATTCAGATGGTGTTGATGCCTCTAAAGTGACCCCGCTATCTCCAGCAACTTTGGCTTTGATGTGCGATGAACAAGACACTATCTTCATGGTGGCTGCACCTTCACCTAATGGCTCAGTCGATCCCAATGGCTGCAGACCAAACTCACAGGGCCAGTCAGAAATTTACGCAGAGCAGGAGAGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCGAACCAATTGTCAACCTACACTCAACAAACCGCAGCCTATGCAGCTGATGAACACAACATCAGCAGCACCAGCAACAGCAACAAACACTCAACATCTTCAAAAACCTCCAGCTTTATCAGAGAAGAAAGACCCCTGA

Protein Analysis

603

Amino Acids

64.63

Weight (kDa)

8.22

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCR PF03638 131 - 166 1e-10 Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR PF03638 217 - 251 2.5e-12 Tesmin/TSO1-like CXC domain, cysteine-rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1615
AasI GACNNNNNNGTC 1 cut(s) 268
Acc36I ACCTGC 2 cut(s) 520, 1615
AccB7I CCANNNNNTGG 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 3 cut(s) 305, 1616, 1675
AccIII TCCGGA 1 cut(s) 452
AciI CCGC 8 cut(s) 15, 32, 134, 278, 547, 598, 1355, 1706
AclWI GGATC 1 cut(s) 1436
AcoI YGGCCR 1 cut(s) 200
AcsI RAATTY 3 cut(s) 26, 1482, 1517
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 3 cut(s) 240, 434, 1653
AfiI CCNNNNNNNGG 3 cut(s) 593, 995, 1635
AflII CTTAAG 1 cut(s) 680
AgsI TTSAA 9 cut(s) 53, 427, 493, 704, 758, 821, 919, 1643, 1775
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 3 cut(s) 766, 1495, 1518
AlwI GGATC 1 cut(s) 1436
AlwNI CAGNNNCTG 1 cut(s) 1527
Aor13HI TCCGGA 1 cut(s) 452
AoxI GGCC 4 cut(s) 200, 353, 566, 1471
ApoI RAATTY 3 cut(s) 26, 1482, 1517
ArsI GACNNNNNNTTYG 4 cut(s) 266, 298, 1669, 1701
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 5 cut(s) 347, 986, 1068, 1307, 1471
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 6 cut(s) 17, 172, 632, 803, 1002, 1416
AsuNHI GCTAGC 1 cut(s) 578
AvaII GGWCC 4 cut(s) 347, 986, 1068, 1307
AxyI CCTNAGG 1 cut(s) 994
BauI CACGAG 1 cut(s) 1020
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 1111
BccI CCATC 6 cut(s) 176, 368, 1015, 1057, 1264, 1322
BceAI ACGGC 3 cut(s) 28, 215, 265
BclI TGATCA 1 cut(s) 1282
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 766, 1495, 1518
BfaI CTAG 4 cut(s) 342, 516, 579, 942
BfmI CTRYAG 2 cut(s) 1131, 1453
BfrI CTTAAG 1 cut(s) 680
BfuAI ACCTGC 2 cut(s) 520, 1615
BglI GCCNNNNNGGC 2 cut(s) 82, 313
BlpI GCTNAGC 1 cut(s) 947
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 4 cut(s) 347, 986, 1068, 1307
BmgT120I GGNCC 5 cut(s) 347, 986, 1068, 1307, 1471
BmiI GGNNCC 5 cut(s) 106, 138, 379, 859, 1070
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 6 cut(s) 325, 458, 644, 665, 1046, 1327
BmtI GCTAGC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 5 cut(s) 563, 864, 867, 1347, 1767
Bpu1102I GCTNAGC 1 cut(s) 947
BpuEI CTTGAG 1 cut(s) 1224
BpuMI CCSGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 1287
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 2 cut(s) 325, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 593, 995, 1635
Bse1I ACTGG 5 cut(s) 103, 850, 985, 1474, 1509
Bse21I CCTNAGG 1 cut(s) 994
Bse3DI GCAATG 1 cut(s) 1039
Bse8I GATNNNNATC 1 cut(s) 1287
BseAI TCCGGA 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 4 cut(s) 316, 449, 659, 680
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 3 cut(s) 593, 995, 1635
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 3 cut(s) 248, 1008, 1449
BseNI ACTGG 5 cut(s) 103, 850, 985, 1474, 1509
BseRI GAGGAG 1 cut(s) 33
BseX3I CGGCCG 1 cut(s) 200
BsgI GTGCAG 2 cut(s) 1209, 1401
Bsh1236I CGCG 3 cut(s) 305, 1616, 1675
Bsh1285I CGRYCG 2 cut(s) 203, 245
BshFI GGCC 4 cut(s) 202, 355, 568, 1473
BsiEI CGRYCG 2 cut(s) 203, 245
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 5 cut(s) 203, 326, 453, 864, 1137
BslFI GGGAC 2 cut(s) 170, 1054
BslI CCNNNNNNNGG 3 cut(s) 593, 995, 1635
BsmAI GTCTC 3 cut(s) 766, 1495, 1518
BsmFI GGGAC 2 cut(s) 170, 1054
BsmI GAATGC 2 cut(s) 446, 1596
BsnI GGCC 4 cut(s) 202, 355, 568, 1473
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp13I TCCGGA 1 cut(s) 452
Bsp143I GATC 4 cut(s) 1195, 1231, 1282, 1441
Bsp1720I GCTNAGC 1 cut(s) 947
Bsp68I TCGCGA 2 cut(s) 1616, 1675
BspACI CCGC 8 cut(s) 15, 32, 134, 278, 547, 598, 1355, 1706
BspANI GGCC 4 cut(s) 202, 355, 568, 1473
BspCNI CTCAG 3 cut(s) 247, 1007, 1448
BspEI TCCGGA 1 cut(s) 452
BspFNI CGCG 3 cut(s) 305, 1616, 1675
BspLI GGNNCC 5 cut(s) 106, 138, 379, 859, 1070
BspMAI CTGCAG 1 cut(s) 1457
BspMI ACCTGC 2 cut(s) 520, 1615
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 1 cut(s) 1436
BspTI CTTAAG 1 cut(s) 680
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 1039
BsrI ACTGG 5 cut(s) 103, 850, 985, 1474, 1509
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 4 cut(s) 1195, 1231, 1282, 1441
BssNAI GTATAC 1 cut(s) 1063
BssSI CACGAG 1 cut(s) 1020
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 1063
Bst2BI CACGAG 1 cut(s) 1020
Bst6I CTCTTC 2 cut(s) 48, 762
BstAFI CTTAAG 1 cut(s) 680
BstAPI GCANNNNNTGC 2 cut(s) 833, 1714
BstC8I GCNNGC 2 cut(s) 78, 580
BstDEI CTNAG 5 cut(s) 234, 888, 947, 994, 1435
BstF5I GGATG 4 cut(s) 316, 449, 659, 680
BstFNI CGCG 3 cut(s) 305, 1616, 1675
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 1198, 1234, 1285, 1444
BstMAI GTCTC 3 cut(s) 766, 1495, 1518
BstMBI GATC 4 cut(s) 1195, 1231, 1282, 1441
BstMCI CGRYCG 2 cut(s) 203, 245
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 1131, 1453
BstUI CGCG 3 cut(s) 305, 1616, 1675
BstV2I GAAGAC 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 808
BstZ17I GTATAC 1 cut(s) 1063
BstZI CGGCCG 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 994
BsuRI GGCC 4 cut(s) 202, 355, 568, 1473
BtgZI GCGATG 1 cut(s) 1401
BtsCI GGATG 4 cut(s) 316, 449, 659, 680
BtsI GCAGTG 2 cut(s) 404, 658
BtsIMutI CAGTG 5 cut(s) 96, 119, 404, 658, 1128
BtuMI TCGCGA 2 cut(s) 1616, 1675
BveI ACCTGC 2 cut(s) 520, 1615
Cac8I GCNNGC 2 cut(s) 78, 580
CaiI CAGNNNCTG 1 cut(s) 1527
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 5 cut(s) 347, 986, 1068, 1307, 1471
Csp6I GTAC 3 cut(s) 239, 433, 1652
CviAII CATG 4 cut(s) 590, 808, 1097, 1408
CviQI GTAC 3 cut(s) 239, 433, 1652
DdeI CTNAG 5 cut(s) 234, 888, 947, 994, 1435
DpnI GATC 4 cut(s) 1197, 1233, 1284, 1443
DpnII GATC 4 cut(s) 1195, 1231, 1282, 1441
DraIII CACNNNGTG 1 cut(s) 593
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 200
EagI CGGCCG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 48, 762
EarI CTCTTC 2 cut(s) 48, 762
EciI GGCGGA 2 cut(s) 30, 267
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 350
Eco147I AGGCCT 2 cut(s) 355, 568
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 4 cut(s) 347, 986, 1068, 1307
Eco52I CGGCCG 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 994
EcoO109I RGGNCCY 1 cut(s) 1068
EcoRI GAATTC 1 cut(s) 26
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 593, 811, 1100, 1411
FaqI GGGAC 2 cut(s) 170, 1054
FatI CATG 4 cut(s) 589, 807, 1096, 1407
FauI CCCGC 3 cut(s) 39, 591, 1362
FbaI TGATCA 1 cut(s) 1282
FblI GTMKAC 1 cut(s) 1062
FokI GGATG 4 cut(s) 303, 436, 666, 687
FspBI CTAG 4 cut(s) 342, 516, 579, 942
GlaI GCGC 1 cut(s) 306
GsuI CTGGAG 5 cut(s) 563, 864, 867, 1347, 1767
HaeIII GGCC 4 cut(s) 202, 355, 568, 1473
HapII CCGG 5 cut(s) 203, 326, 453, 864, 1137
HhaI GCGC 1 cut(s) 307
Hin1II CATG 4 cut(s) 593, 811, 1100, 1411
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 3 cut(s) 301, 1512, 1688
HindII GTYRAC 3 cut(s) 301, 1512, 1688
HindIII AAGCTT 1 cut(s) 777
HinfI GANTC 6 cut(s) 329, 550, 935, 1316, 1565, 1639
HpaI GTTAAC 2 cut(s) 301, 1512
HpaII CCGG 5 cut(s) 203, 326, 453, 864, 1137
HphI GGTGA 6 cut(s) 17, 172, 632, 803, 1002, 1416
Hpy166II GTNNAC 9 cut(s) 301, 410, 587, 794, 986, 1063, 1192, 1512, 1688
Hpy188I TCNGA 8 cut(s) 66, 109, 321, 724, 1327, 1480, 1523, 1795
Hpy188III TCNNGA 7 cut(s) 453, 542, 672, 905, 1305, 1615, 1674
Hpy8I GTNNAC 9 cut(s) 301, 410, 587, 794, 986, 1063, 1192, 1512, 1688
Hpy99I CGWCG 7 cut(s) 70, 149, 160, 196, 250, 265, 268
HpyAV CCTTC 6 cut(s) 198, 359, 752, 885, 888, 1431
HpyCH4IV ACGT 2 cut(s) 155, 248
HpyF3I CTNAG 5 cut(s) 234, 888, 947, 994, 1435
HpySE526I ACGT 2 cut(s) 155, 248
Hsp92II CATG 4 cut(s) 593, 811, 1100, 1411
HspAI GCGC 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 1282
KspAI GTTAAC 2 cut(s) 301, 1512
Kzo9I GATC 4 cut(s) 1195, 1231, 1282, 1441
LmnI GCTCC 6 cut(s) 110, 142, 544, 848, 877, 1667
LweI GCATC 6 cut(s) 325, 458, 644, 665, 1046, 1327
MaeI CTAG 4 cut(s) 342, 516, 579, 942
MaeII ACGT 2 cut(s) 155, 248
MaeIII GTNAC 9 cut(s) 229, 249, 282, 288, 401, 464, 473, 1126, 1348
MalI GATC 4 cut(s) 1197, 1233, 1284, 1443
MbiI CCGCTC 1 cut(s) 547
MboI GATC 4 cut(s) 1195, 1231, 1282, 1441
MfeI CAATTG 2 cut(s) 1656, 1681
MhlI GDGCHC 1 cut(s) 1111
MmeI TCCRAC 3 cut(s) 89, 825, 1114
Mph1103I ATGCAT 1 cut(s) 1039
MroI TCCGGA 1 cut(s) 452
MseI TTAA 5 cut(s) 300, 681, 930, 1511, 1533
MspA1I CMGCKG 3 cut(s) 134, 1259, 1720
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 5 cut(s) 203, 326, 453, 864, 1137
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 2 cut(s) 1656, 1681
Mva1269I GAATGC 2 cut(s) 446, 1596
MvnI CGCG 3 cut(s) 305, 1616, 1675
NciI CCSGG 1 cut(s) 204
NdeII GATC 4 cut(s) 1195, 1231, 1282, 1441
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 4 cut(s) 593, 811, 1100, 1411
NlaIV GGNNCC 5 cut(s) 106, 138, 379, 859, 1070
NmuCI GTSAC 5 cut(s) 282, 288, 464, 1126, 1348
NruI TCGCGA 2 cut(s) 1616, 1675
NsiI ATGCAT 1 cut(s) 1039
PaqCI CACCTGC 1 cut(s) 1615
PceI AGGCCT 2 cut(s) 355, 568
PctI GAATGC 2 cut(s) 446, 1596
PfeI GAWTC 6 cut(s) 329, 550, 935, 1316, 1565, 1639
PflFI GACNNNGTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 593
PpuMI RGGWCCY 1 cut(s) 1068
Psp5II RGGWCCY 1 cut(s) 1068
PspN4I GGNNCC 5 cut(s) 106, 138, 379, 859, 1070
PspPI GGNCC 5 cut(s) 347, 986, 1068, 1307, 1471
PspPPI RGGWCCY 1 cut(s) 1068
PstI CTGCAG 1 cut(s) 1457
PstNI CAGNNNCTG 1 cut(s) 1527
PsyI GACNNNGTC 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 1259, 1720
RruI TCGCGA 2 cut(s) 1616, 1675
RsaI GTAC 3 cut(s) 240, 434, 1653
RsaNI GTAC 3 cut(s) 239, 433, 1652
SaqAI TTAA 5 cut(s) 300, 681, 930, 1511, 1533
Sau3AI GATC 4 cut(s) 1195, 1231, 1282, 1441
Sau96I GGNCC 5 cut(s) 347, 986, 1068, 1307, 1471
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 1111
SfaNI GCATC 6 cut(s) 325, 458, 644, 665, 1046, 1327
SfcI CTRYAG 2 cut(s) 1131, 1453
SinI GGWCC 4 cut(s) 347, 986, 1068, 1307
SmlI CTYRAG 2 cut(s) 680, 1239
SmoI CTYRAG 2 cut(s) 680, 1239
SseBI AGGCCT 2 cut(s) 355, 568
SsiI CCGC 8 cut(s) 15, 32, 134, 278, 547, 598, 1355, 1706
SspI AATATT 1 cut(s) 712
SspMI CTAG 4 cut(s) 342, 516, 579, 942
StuI AGGCCT 2 cut(s) 355, 568
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 2 cut(s) 158, 251
TaqI TCGA 4 cut(s) 90, 191, 1440, 1537
TaqII GACCGA 2 cut(s) 212, 259
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 6 cut(s) 329, 550, 935, 1316, 1565, 1639
Tru1I TTAA 5 cut(s) 300, 681, 930, 1511, 1533
Tru9I TTAA 5 cut(s) 300, 681, 930, 1511, 1533
TscAI CASTG 5 cut(s) 103, 126, 404, 665, 1135
TseFI GTSAC 5 cut(s) 282, 288, 464, 1126, 1348
Tsp45I GTSAC 5 cut(s) 282, 288, 464, 1126, 1348
TspDTI ATGAA 7 cut(s) 126, 522, 927, 1188, 1396, 1404, 1739
TspRI CASTG 5 cut(s) 103, 126, 404, 665, 1135
Tth111I GACNNNGTC 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 593
Vha464I CTTAAG 1 cut(s) 680
VpaK11BI GGWCC 4 cut(s) 347, 986, 1068, 1307
XapI RAATTY 3 cut(s) 26, 1482, 1517
XmiI GTMKAC 1 cut(s) 1062
XspI CTAG 4 cut(s) 342, 516, 579, 942
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.