Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010207

Physical Location & Seq

Genomic Coordinates Forward (+)

8805342 .. 8808171

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCTCTCTCCATCTCCGGGAAATGGCAGAACCAACAGCTTCGTCGTCTCAACATCCACGAGTATCAGGGAGCTGAATTGATGGGGAAATATGGAGTTAATGTGCCGAAAGGAGTAGCTGCTTCTTCGTTGGAAGAAGTTAAAAAGGCTATTCAAGATGTTTTCCCTAATGAAAGCGAGTTGGTTGTTAAGAGCCAGATTTTGGCTGGTGGAAGAGGTCTTGGAACATTCAAGAGTGGTCTTAAGGGTGGTGTTCACATTGTTAAACGTGATGAGGCTGAAGAGATTGCTGGAAAGATGCTAGGACAAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTGTGGATGGTCTGGCTCCCAAAGCTGCTGACAGAAAAGATTCGATTGAACAAGTGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTTCCGACAAAAAGAGGTTTTCGCCATGCGTGATCCAACACAGGAGGATCCACGAGAGGTGGCTGCTGCTAAAGTTGACCTGAACTACATCGGTTTAGATGGAGAGATTGGTTGCATGGTGAATGGTGCTGGATTGGCCATGGCAACCATGGACATCATTAAATTACACGGTGGAACACCCGCCAATTTCCTTGACGTTGGTGGAAATGCTTCTGAGCACCAGGTGGTGGAAGCGTTTAAGATACTGACATCGGACGATAAAGTGAAAGCAATCTTGGTGAACATATTTGGTGGGATAATGAAATGTGATGTGATTGCTAGTGGAATCGTGAACGCTGCAAAAGAGGTCGCATTGAAAGTGCCAGTGGTGGTTCGTCTAGAAGGAACGAATGTTGAGCAGGGAAAGAGAATCCTCAAGGAAAGTGGAATGAAACTCATAACAGCTGATGATTTGGATGATGCAGCTGAGAAAGCGGTTAAAGCTTTAGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ATP-grasp_2 Ligase_CoA

Protein Analysis

421

Amino Acids

45.35

Weight (kDa)

6.3

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-grasp_2	PF08442	28 - 236	9.5e-61	ATP-grasp domain
Citrate_synth_N	PF24948	55 - 262	2.8e-12	ATP-citrate synthase ATP-grasp domain
Ligase_CoA	PF00549	296 - 416	1e-36	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20420
fragaria_vesca	FvH4_2g20990 FvH4_2g20990 FvH4_2g20990
malus_domestica	MD05G1193100.v1.1 MD10G1179600.v1.1
prunus_persica	Prupe.8G219400_v2.0.a1 Prupe.8G219400_v2.0.a1
pyrus_communis	pycom05g18000 pycom10g15570
rosa_chinensis	RchiOBHm_Chr6g0287371
rosa_laevigata	RLG00000012494
rosa_multiflora	Rmu_sc0007029.1_g000025
rosa_roxburghii	Rroxscaffold_7G00181490
rosa_rugosa	Rorug06G0187700.1
rosa_samantha	Rh6AG298900 Rh6BG304500 Rh6CG305200 Rh6CG313000 Rh6DG296300
rosa_wichuraiana	Rw6G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	491, 541
AccB1I	GGYRCC	2 cut(s)	491, 541
AccB7I	CCANNNNNTGG	2 cut(s)	232, 997
AciI	CCGC	4 cut(s)	667, 707, 951, 1244
AclWI	GGATC	3 cut(s)	797, 812, 825
AcoI	YGGCCR	1 cut(s)	906
AcuI	CTGAAG	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	994
AfaI	GTAC	4 cut(s)	342, 428, 493, 543
AfiI	CCNNNNNNNGG	4 cut(s)	48, 54, 232, 997
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	185, 262, 503, 638, 751, 1126
AjnI	CCWGG	1 cut(s)	990
AjuI	GAANNNNNNNTTGG	4 cut(s)	737, 769, 1028, 1060
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	2 cut(s)	83, 704
AlwI	GGATC	3 cut(s)	797, 812, 825
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	9 cut(s)	149, 581, 614, 734, 767, 833, 836, 1106, 1232
Asp700I	GAANNNNTTC	2 cut(s)	628, 979
Asp718I	GGTACC	2 cut(s)	491, 541
AspS9I	GGNCC	3 cut(s)	362, 445, 461
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	4 cut(s)	25, 340, 901, 1060
AvaII	GGWCC	3 cut(s)	362, 445, 461
BalI	TGGCCA	1 cut(s)	908
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	2 cut(s)	491, 541
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BauI	CACGAG	3 cut(s)	23, 89, 822
Bbv12I	GWGCWC	1 cut(s)	990
BbvI	GCAGC	9 cut(s)	136, 568, 601, 721, 754, 820, 823, 1093, 1244
BccI	CCATC	4 cut(s)	50, 106, 590, 863
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	1 cut(s)	992
BclI	TGATCA	2 cut(s)	468, 531
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	83, 704
BfaI	CTAG	3 cut(s)	332, 1089, 1148
BfrI	CTTAAG	1 cut(s)	272
BglII	AGATCT	2 cut(s)	32, 505
BisI	GCNGC	9 cut(s)	150, 582, 615, 735, 768, 834, 837, 1107, 1233
BlsI	GCNGC	9 cut(s)	151, 583, 616, 736, 769, 835, 838, 1108, 1234
BmcAI	AGTACT	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	49, 992
Bme18I	GGWCC	3 cut(s)	362, 445, 461
BmgT120I	GGNCC	3 cut(s)	362, 445, 461
BmiI	GGNNCC	4 cut(s)	493, 543, 606, 819
BmrFI	CCNGG	2 cut(s)	49, 992
BmsI	GCATC	4 cut(s)	318, 568, 730, 1219
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	351, 1169
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	909, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 54, 232, 997
Bse1I	ACTGG	3 cut(s)	364, 495, 1133
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	992
BseDI	CCNNGG	2 cut(s)	909, 918
BseGI	GGATG	3 cut(s)	84, 601, 1231
BseLI	CCNNNNNNNGG	4 cut(s)	48, 54, 232, 997
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	504, 975, 1227
BseNI	ACTGG	3 cut(s)	364, 495, 1133
BseXI	GCAGC	9 cut(s)	136, 568, 601, 721, 754, 820, 823, 1093, 1244
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	908
BshNI	GGYRCC	2 cut(s)	491, 541
BsiHKAI	GWGCWC	1 cut(s)	990
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	4 cut(s)	48, 54, 232, 997
BsmAI	GTCTC	2 cut(s)	83, 704
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	908
Bsp1286I	GDGCHC	1 cut(s)	990
Bsp143I	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
Bsp19I	CCATGG	2 cut(s)	909, 918
BspACI	CCGC	4 cut(s)	667, 707, 951, 1244
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	3 cut(s)	505, 976, 1228
BspLI	GGNNCC	4 cut(s)	493, 543, 606, 819
BspPI	GGATC	3 cut(s)	797, 812, 825
BspT107I	GGYRCC	2 cut(s)	491, 541
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	364, 495, 1133
BssECI	CCNNGG	2 cut(s)	909, 918
BssMI	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
BssSI	CACGAG	3 cut(s)	23, 89, 822
BssT1I	CCWWGG	2 cut(s)	909, 918
Bst2BI	CACGAG	3 cut(s)	23, 89, 822
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	3 cut(s)	449, 465, 941
Bst6I	CTCTTC	3 cut(s)	238, 306, 668
BstAFI	CTTAAG	1 cut(s)	272
BstDEI	CTNAG	4 cut(s)	513, 585, 984, 1236
BstDSI	CCRYGG	2 cut(s)	909, 918
BstF5I	GGATG	3 cut(s)	84, 601, 1231
BstKTI	GATC	6 cut(s)	35, 471, 508, 534, 805, 820
BstMAI	GTCTC	2 cut(s)	83, 704
BstMBI	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	611, 740, 905, 1241, 1250
BstNI	CCWGG	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	47, 990
BstV1I	GCAGC	9 cut(s)	136, 568, 601, 721, 754, 820, 823, 1093, 1244
BstX2I	RGATCY	3 cut(s)	32, 505, 817
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	3 cut(s)	32, 505, 817
BsuRI	GGCC	1 cut(s)	908
BtgI	CCRYGG	2 cut(s)	909, 918
BtsCI	GGATG	3 cut(s)	84, 601, 1231
BtsIMutI	CAGTG	2 cut(s)	567, 1140
Cfr13I	GGNCC	3 cut(s)	362, 445, 461
CsiI	ACCWGGT	1 cut(s)	990
Csp6I	GTAC	4 cut(s)	341, 427, 492, 542
CspCI	CAANNNNNGTGG	2 cut(s)	1174, 1209
CviAII	CATG	5 cut(s)	529, 796, 886, 910, 919
CviQI	GTAC	4 cut(s)	341, 427, 492, 542
DdeI	CTNAG	4 cut(s)	513, 585, 984, 1236
DpnI	GATC	6 cut(s)	34, 470, 507, 533, 804, 819
DpnII	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
DraIII	CACNNNGTG	1 cut(s)	994
EaeI	YGGCCR	1 cut(s)	906
Eam1104I	CTCTTC	3 cut(s)	238, 306, 668
EarI	CTCTTC	3 cut(s)	238, 306, 668
Eco130I	CCWWGG	2 cut(s)	909, 918
Eco47I	GGWCC	3 cut(s)	362, 445, 461
Eco57I	CTGAAG	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	990
EcoT14I	CCWWGG	2 cut(s)	909, 918
ErhI	CCWWGG	2 cut(s)	909, 918
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	5 cut(s)	532, 799, 889, 913, 922
FaiI	YATR	9 cut(s)	123, 530, 655, 797, 887, 911, 920, 1055, 1208
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	5 cut(s)	528, 795, 885, 909, 918
FauI	CCCGC	1 cut(s)	958
FbaI	TGATCA	2 cut(s)	468, 531
Fnu4HI	GCNGC	9 cut(s)	150, 582, 615, 735, 768, 834, 837, 1107, 1233
FokI	GGATG	3 cut(s)	71, 608, 1238
Fsp4HI	GCNGC	9 cut(s)	150, 582, 615, 735, 768, 834, 837, 1107, 1233
FspBI	CTAG	3 cut(s)	332, 1089, 1148
GluI	GCNGC	9 cut(s)	150, 582, 615, 735, 768, 834, 837, 1107, 1233
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	5 cut(s)	532, 799, 889, 913, 922
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	1251
HinfI	GANTC	4 cut(s)	564, 629, 1095, 1179
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	4 cut(s)	25, 340, 901, 1060
Hpy166II	GTNNAC	6 cut(s)	16, 286, 391, 847, 1051, 1102
Hpy188I	TCNGA	3 cut(s)	776, 985, 1024
Hpy188III	TCNNGA	6 cut(s)	30, 185, 262, 443, 1099, 1148
Hpy8I	GTNNAC	6 cut(s)	16, 286, 391, 847, 1051, 1102
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	1145
HpyCH4III	ACNGT	3 cut(s)	449, 465, 941
HpyCH4IV	ACGT	2 cut(s)	298, 966
HpyCH4V	TGCA	5 cut(s)	560, 681, 885, 1109, 1232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	611, 740, 905, 1241, 1250
HpyF3I	CTNAG	4 cut(s)	513, 585, 984, 1236
HpySE526I	ACGT	2 cut(s)	298, 966
Hsp92II	CATG	5 cut(s)	532, 799, 889, 913, 922
KpnI	GGTACC	2 cut(s)	495, 545
Ksp22I	TGATCA	2 cut(s)	468, 531
Kzo9I	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
LmnI	GCTCC	2 cut(s)	101, 610
Lsp1109I	GCAGC	9 cut(s)	136, 568, 601, 721, 754, 820, 823, 1093, 1244
LweI	GCATC	4 cut(s)	318, 568, 730, 1219
MabI	ACCWGGT	1 cut(s)	990
MaeI	CTAG	3 cut(s)	332, 1089, 1148
MaeII	ACGT	2 cut(s)	298, 966
MaeIII	GTNAC	2 cut(s)	346, 408
MalI	GATC	6 cut(s)	34, 470, 507, 533, 804, 819
MboI	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
MboII	GAAGA	8 cut(s)	147, 176, 255, 323, 515, 587, 655, 658
MfeI	CAATTG	2 cut(s)	546, 725
MflI	RGATCY	3 cut(s)	32, 505, 817
MhlI	GDGCHC	1 cut(s)	990
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	7 cut(s)	107, 404, 546, 725, 746, 932, 955
MluNI	TGGCCA	1 cut(s)	908
MmeI	TCCRAC	4 cut(s)	141, 669, 799, 830
MnlI	CCTC	8 cut(s)	239, 298, 375, 778, 808, 820, 1108, 1193
Mox20I	TGGCCA	1 cut(s)	908
MroXI	GAANNNNTTC	2 cut(s)	628, 979
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	8 cut(s)	129, 171, 219, 273, 294, 930, 1008, 1248
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	1214, 1235
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	49, 992
MunI	CAATTG	2 cut(s)	546, 725
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	5 cut(s)	611, 740, 905, 1241, 1250
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	2 cut(s)	909, 918
NdeII	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
NlaIII	CATG	5 cut(s)	532, 799, 889, 913, 922
NlaIV	GGNNCC	4 cut(s)	493, 543, 606, 819
NmuCI	GTSAC	2 cut(s)	346, 408
PdmI	GAANNNNTTC	2 cut(s)	628, 979
PfeI	GAWTC	4 cut(s)	564, 629, 1095, 1179
PflMI	CCANNNNNTGG	2 cut(s)	232, 997
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	9 cut(s)	151, 583, 616, 736, 769, 835, 838, 1108, 1234
Psp6I	CCWGG	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	990
PspN4I	GGNNCC	4 cut(s)	493, 543, 606, 819
PspPI	GGNCC	3 cut(s)	362, 445, 461
PsuI	RGATCY	3 cut(s)	32, 505, 817
PvuII	CAGCTG	2 cut(s)	1214, 1235
RsaI	GTAC	4 cut(s)	342, 428, 493, 543
RsaNI	GTAC	4 cut(s)	341, 427, 492, 542
SaqAI	TTAA	8 cut(s)	129, 171, 219, 273, 294, 930, 1008, 1248
SatI	GCNGC	9 cut(s)	150, 582, 615, 735, 768, 834, 837, 1107, 1233
Sau3AI	GATC	6 cut(s)	32, 468, 505, 531, 802, 817
Sau96I	GGNCC	3 cut(s)	362, 445, 461
ScaI	AGTACT	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	49, 992
SduI	GDGCHC	1 cut(s)	990
SexAI	ACCWGGT	1 cut(s)	990
SfaNI	GCATC	4 cut(s)	318, 568, 730, 1219
SinI	GGWCC	3 cut(s)	362, 445, 461
SmlI	CTYRAG	3 cut(s)	272, 366, 1184
SmoI	CTYRAG	3 cut(s)	272, 366, 1184
Sse9I	AATT	7 cut(s)	107, 404, 546, 725, 746, 932, 955
SsiI	CCGC	4 cut(s)	667, 707, 951, 1244
SspMI	CTAG	3 cut(s)	332, 1089, 1148
StyD4I	CCNGG	2 cut(s)	47, 990
StyI	CCWWGG	2 cut(s)	909, 918
TaaI	ACNGT	3 cut(s)	449, 465, 941
TaiI	ACGT	2 cut(s)	301, 969
TaqI	TCGA	2 cut(s)	632, 756
TasI	AATT	7 cut(s)	107, 404, 546, 725, 746, 932, 955
TatI	WGTACW	2 cut(s)	340, 426
TfiI	GAWTC	4 cut(s)	564, 629, 1095, 1179
Tru1I	TTAA	8 cut(s)	129, 171, 219, 273, 294, 930, 1008, 1248
Tru9I	TTAA	8 cut(s)	129, 171, 219, 273, 294, 930, 1008, 1248
TscAI	CASTG	2 cut(s)	574, 1140
TseFI	GTSAC	2 cut(s)	346, 408
TseI	GCWGC	9 cut(s)	149, 581, 614, 734, 767, 833, 836, 1106, 1232
Tsp45I	GTSAC	2 cut(s)	346, 408
TspDTI	ATGAA	4 cut(s)	216, 588, 1085, 1214
TspRI	CASTG	2 cut(s)	574, 1140
Van91I	CCANNNNNTGG	2 cut(s)	232, 997
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	362, 445, 461
XbaI	TCTAGA	1 cut(s)	1147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	233, 916
XmnI	GAANNNNTTC	2 cut(s)	628, 979
XspI	CTAG	3 cut(s)	332, 1089, 1148
ZrmI	AGTACT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.