Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010207

Physical Location & Seq

Genomic Coordinates Forward (+)

49682075 .. 49686717

Gene Structure 4643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGCAAATATGGGATCAATGTTCCCAAAGGTGTGGCCGTCGGTAGTGTTGATGAAGTCAAGAAGGTGATAGAGAGTGTTTTCCCCAATCAAAGTGAGTTGGTGGTTAAGAGCCAAGTTTTGGCTGGTGGAAGAGGTTTGGGAACATTTAAAAATGGTCTCAAGGGCGGTGTTCACATTGTCAAGGCTGACCAAGTTGAAGAACTCGCTGGGAAGATGCTTGGGCAGATACTTGTTACAAAACAAACAGGTGCTGAGGGAAAAATTGTCAGCAAGGTGTATTTGTGTGAAAAATTGTCGCTTGTCAACGAAATGTATTTTGCTATTACTCTGGATCGCAAAAGTGCTGGTCCCCTTATTATTGCCTGCGCAAAGGGAGGAACGAGCATTGAAGACCTTGCTGAGAAATTCCCTGATATGATAGTAAAGGTACCTATCGATGTTTTCAAAGGAATTACAGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGGGGCTGATAGAAATAGTTCAATTGAACAAGTGAAGAAATTATATAATCTGTTCTGTGAGACTGACTGCACACTGTTGGAAATCAACCCACTTGCAGAGACTGCTGATAACCAGCTAGTAGCTGCTGATGCGAAGTTGAACTTTGATGACAACGCCGCTTTTCGTCAGAAAGAAATTTTTGCCCTCCGTGATCCTACACAGGAGGATCCCCGAGAGGTGGCTGCTGCCAAAGCAGATTTAAACTATATTGGTTTAGATGGGGAAATCGGATGCATGGTGAATGGTGCTGGTTTAGCTATGTCTACAATGGATATTATTAAACTACATGGAGGAACTCCTGCCAATTTTCTAGATGTAGGTGGGAATGCGTCTGAAGGCCAGGTTGTTGAGGCATTTAAGATTTTGACTTCAGATGACAAAGTTAAAGCCATTTTGGTGAACATCTTTGGTGGAATAATGAAATGTGATGTGATTGCAAGTGGAATTGTCAATGCAGCTAAACAGGTTCAACTAAAAGTACCAGTTGTTGTCCGTCTTGAGGGTACCAATGTTGACCAAGGAAAGAGAATTTTGAAGGAAAGTGGGATGACATTGATCACAGCAGAAGATCTCGATGATGCTGCTAAGAAAGCTGTTGAGGCAATATCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ATP-grasp_2 Ligase_CoA

Protein Analysis

384

Amino Acids

40.78

Weight (kDa)

5.15

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-grasp_2	PF08442	1 - 199	7.1e-56	ATP-grasp domain
Citrate_synth_N	PF24948	18 - 224	2.1e-12	ATP-citrate synthase ATP-grasp domain
Ligase_CoA	PF00549	259 - 379	3.4e-36	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20420
fragaria_vesca	FvH4_2g20990 FvH4_2g20990 FvH4_2g20990
malus_domestica	MD05G1193100.v1.1 MD10G1179600.v1.1
prunus_persica	Prupe.8G219400_v2.0.a1 Prupe.8G219400_v2.0.a1
pyrus_communis	pycom05g18000 pycom10g15570
rosa_chinensis	RchiOBHm_Chr6g0287371
rosa_laevigata	RLG00000012494
rosa_multiflora	Rmu_sc0007029.1_g000025
rosa_roxburghii	Rroxscaffold_7G00181490
rosa_rugosa	Rorug06G0187700.1
rosa_samantha	Rh6AG298900 Rh6BG304500 Rh6CG305200 Rh6CG313000 Rh6DG296300
rosa_wichuraiana	Rw6G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
Acc65I	GGTACC	2 cut(s)	430, 1043
AccB1I	GGYRCC	2 cut(s)	430, 1043
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	803
AciI	CCGC	2 cut(s)	168, 657
AclWI	GGATC	5 cut(s)	23, 342, 686, 701, 714
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	407, 675, 1068
AcuI	CTGAAG	2 cut(s)	894, 894
AfaI	GTAC	3 cut(s)	432, 1020, 1045
AfiI	CCNNNNNNNGG	3 cut(s)	121, 718, 1039
AgsI	TTSAA	8 cut(s)	200, 392, 448, 522, 527, 640, 1010, 1075
AjnI	CCWGG	1 cut(s)	879
AluBI	AGCT	5 cut(s)	616, 623, 797, 998, 1133
AluI	AGCT	5 cut(s)	616, 623, 797, 998, 1133
Alw26I	GTCTC	3 cut(s)	164, 554, 593
AlwI	GGATC	5 cut(s)	23, 342, 686, 701, 714
AlwNI	CAGNNNCTG	2 cut(s)	254, 602
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	2 cut(s)	36, 877
ApeKI	GCWGC	6 cut(s)	470, 623, 722, 725, 995, 1121
ApoI	RAATTY	3 cut(s)	407, 675, 1068
Asp700I	GAANNNNTTC	1 cut(s)	517
Asp718I	GGTACC	2 cut(s)	430, 1043
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	79, 790, 949
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	1035, 1068
BamHI	GGATCC	1 cut(s)	706
BanI	GGYRCC	2 cut(s)	430, 1043
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	6 cut(s)	457, 610, 709, 712, 1007, 1108
BccI	CCATC	2 cut(s)	479, 752
BceAI	ACGGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	1103, 1137
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	1095
BcoDI	GTCTC	3 cut(s)	164, 554, 593
BfaI	CTAG	2 cut(s)	617, 851
BglII	AGATCT	1 cut(s)	1108
BisI	GCNGC	7 cut(s)	471, 624, 657, 723, 726, 996, 1122
BlsI	GCNGC	7 cut(s)	472, 625, 658, 724, 727, 997, 1123
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	4 cut(s)	352, 432, 708, 1045
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	5 cut(s)	207, 457, 619, 761, 1108
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	146, 1058
Bsa29I	ATCGAT	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	1057
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 718, 1039
Bse1I	ACTGG	1 cut(s)	1022
BseBI	CCWGG	1 cut(s)	881
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	1057
BseGI	GGATG	2 cut(s)	776, 1092
BseLI	CCNNNNNNNGG	3 cut(s)	121, 718, 1039
BseMII	CTCAG	2 cut(s)	246, 393
BseNI	ACTGG	1 cut(s)	1022
BseXI	GCAGC	6 cut(s)	457, 610, 709, 712, 1007, 1108
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	38, 879
BshNI	GGYRCC	2 cut(s)	430, 1043
BshVI	ATCGAT	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	121, 718, 1039
BsmAI	GTCTC	3 cut(s)	164, 554, 593
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	38, 879
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	711
Bsp143I	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
BspACI	CCGC	2 cut(s)	168, 657
BspANI	GGCC	2 cut(s)	38, 879
BspCNI	CTCAG	2 cut(s)	247, 394
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	352, 432, 708, 1045
BspPI	GGATC	5 cut(s)	23, 342, 686, 701, 714
BspT107I	GGYRCC	2 cut(s)	430, 1043
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	1 cut(s)	1057
BssMI	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
BssT1I	CCWWGG	1 cut(s)	1057
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	255, 402, 1125
BstF5I	GGATG	2 cut(s)	776, 1092
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	6 cut(s)	18, 337, 694, 709, 1098, 1111
BstMAI	GTCTC	3 cut(s)	164, 554, 593
BstMBI	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
BstMWI	GCNNNNNNNGC	6 cut(s)	602, 629, 731, 794, 1130, 1139
BstNI	CCWGG	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	879
BstV1I	GCAGC	6 cut(s)	457, 610, 709, 712, 1007, 1108
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	706, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	706, 1108
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	38, 879
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	776, 1092
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	2 cut(s)	254, 602
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	858
Csp6I	GTAC	3 cut(s)	431, 1019, 1044
CviAII	CATG	2 cut(s)	775, 827
CviQI	GTAC	3 cut(s)	431, 1019, 1044
DdeI	CTNAG	3 cut(s)	255, 402, 1125
DpnI	GATC	6 cut(s)	17, 336, 693, 708, 1097, 1110
DpnII	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
DraI	TTTAAA	2 cut(s)	151, 741
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	1057
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	894, 894
Eco88I	CYCGRG	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	1057
EcoT22I	ATGCAT	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	1057
FaeI	CATG	2 cut(s)	778, 830
FaiI	YATR	8 cut(s)	12, 419, 544, 546, 747, 776, 800, 828
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	2 cut(s)	774, 826
FbaI	TGATCA	1 cut(s)	1095
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	7 cut(s)	471, 624, 657, 723, 726, 996, 1122
FokI	GGATG	2 cut(s)	783, 1099
Fsp4HI	GCNGC	7 cut(s)	471, 624, 657, 723, 726, 996, 1122
FspBI	CTAG	2 cut(s)	617, 851
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	7 cut(s)	471, 624, 657, 723, 726, 996, 1122
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	38, 879
HgaI	GACGC	1 cut(s)	858
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	778, 830
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	2 cut(s)	307, 1054
HindII	GTYRAC	2 cut(s)	307, 1054
HphI	GGTGA	3 cut(s)	79, 790, 949
Hpy166II	GTNNAC	5 cut(s)	175, 307, 804, 940, 1054
Hpy188I	TCNGA	4 cut(s)	669, 770, 874, 913
Hpy188III	TCNNGA	5 cut(s)	61, 332, 851, 1037, 1112
Hpy8I	GTNNAC	5 cut(s)	175, 307, 804, 940, 1054
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	58, 869, 1069
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	6 cut(s)	473, 570, 596, 774, 977, 995
HpyF10VI	GCNNNNNNNGC	6 cut(s)	602, 629, 731, 794, 1130, 1139
HpyF3I	CTNAG	3 cut(s)	255, 402, 1125
Hsp92II	CATG	2 cut(s)	778, 830
HspAI	GCGC	1 cut(s)	369
KpnI	GGTACC	2 cut(s)	434, 1047
Ksp22I	TGATCA	1 cut(s)	1095
Kzo9I	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
Lsp1109I	GCAGC	6 cut(s)	457, 610, 709, 712, 1007, 1108
LweI	GCATC	5 cut(s)	207, 457, 619, 761, 1108
MaeI	CTAG	2 cut(s)	617, 851
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	6 cut(s)	17, 336, 693, 708, 1097, 1110
MboI	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
MboII	GAAGA	7 cut(s)	144, 212, 226, 404, 476, 547, 1118
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	706, 1108
MmeI	TCCRAC	1 cut(s)	558
Mph1103I	ATGCAT	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	6 cut(s)	108, 150, 740, 819, 897, 924
MslI	CAYNNNNRTG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	881
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	6 cut(s)	602, 629, 731, 794, 1130, 1139
NdeII	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
NlaIII	CATG	2 cut(s)	778, 830
NlaIV	GGNNCC	4 cut(s)	352, 432, 708, 1045
NsbI	TGCGCA	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	776
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	7 cut(s)	472, 625, 658, 724, 727, 997, 1123
Psp6I	CCWGG	1 cut(s)	879
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	4 cut(s)	352, 432, 708, 1045
PspPI	GGNCC	1 cut(s)	350
PstNI	CAGNNNCTG	2 cut(s)	254, 602
PsuI	RGATCY	2 cut(s)	706, 1108
RsaI	GTAC	3 cut(s)	432, 1020, 1045
RsaNI	GTAC	3 cut(s)	431, 1019, 1044
RseI	CAYNNNNRTG	1 cut(s)	935
SaqAI	TTAA	6 cut(s)	108, 150, 740, 819, 897, 924
SatI	GCNGC	7 cut(s)	471, 624, 657, 723, 726, 996, 1122
Sau3AI	GATC	6 cut(s)	15, 334, 691, 706, 1095, 1108
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	881
SfaNI	GCATC	5 cut(s)	207, 457, 619, 761, 1108
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	935
SmlI	CTYRAG	2 cut(s)	161, 1037
SmoI	CTYRAG	2 cut(s)	161, 1037
SsiI	CCGC	2 cut(s)	168, 657
SspMI	CTAG	2 cut(s)	617, 851
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	1057
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	438, 1113
TauI	GCSGC	1 cut(s)	659
Tru1I	TTAA	6 cut(s)	108, 150, 740, 819, 897, 924
Tru9I	TTAA	6 cut(s)	108, 150, 740, 819, 897, 924
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	6 cut(s)	470, 623, 722, 725, 995, 1121
TspDTI	ATGAA	3 cut(s)	69, 477, 974
TspGWI	ACGGA	2 cut(s)	677, 1022
TspRI	CASTG	1 cut(s)	579
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	3 cut(s)	407, 675, 1068
XbaI	TCTAGA	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	2 cut(s)	617, 851
Zsp2I	ATGCAT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.