Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007029.1

Orthogroup ID

OG0010207

Physical Location & Seq

Genomic Coordinates Reverse (-)

105912 .. 110875

Gene Structure 4964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007029.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggtgagaggattactcaagcacctcacttctcgctctctctccatcgccggaaaatggcagcagcaacagctccgccgcctcaacatccacgaataccagggggctgagttgatgagcaaatatgggatcaatgttcccaaaggtgtggccgtcggtagtgttgatgaagtcaagaaggtgatagagagtgttttccccaatcaaagtgagttggtggttaagagccaagttttggctggtggaagaggtttgggaacatttaaaaatggtctcaagggcggtgttcacattgtcaaggctgaccaagttgaagaactcgctgggaagatgcttgggcagatacttgttacaaaacaaacaggtgctgaggggaaaattgtcagcaaggtgtatttgtgtgaaaaattgtcgcttgtcaacgaaatgtattttgctattactctggatcgcaaaagtgctggtccccttattattgcctgcgcaaagggaggaacgagcattgaagaccttgctgagaaattccctgatatgatagtaaaggtacctatcgatgttttcaaaggaattacagatgaagatgctgcaaaggttgttgatggtttggctctcaaaggggctgatagaaatagttcaattgaacaagtgaagaaattatataatctgttctgtgagactgactgcacactgttggaagtacctatcgatgttttcaaaggaattacagatgaagatgctgcaaaggttgttgatggtttggctctcaaaggagctgatagaaatagttcaattgaacaagtgaagaaattatataatctgttctgtgagactgactgcacactgttggaaatcaacccacttgcagagactgctgataaccagctagtagctgctgatgcgaagttgaactttgatgacaacgccgcttttcgtcagaaagaaatttttgccctccgtgatcctacacaggaggatccccgagaggtggctgctgccaaagcagatttaaactatattggtttagatggggaaatcggatgcatggtgaatggtgctggtttagctatgtctacaatggatattattaaactacatggaggaactcctgccaattttctagatgtaggtgggaatgcgtctgaaggccaggttgttgaggcatttaagattttgacttcagatgacaaagttaaagccattttggtgaacatctttggtggaataatgaaatgtgatgtgattgcaagtggaattgtaaatgcagctaaacaggttcaactaaaagtaccagttgttgtccgtcttgagggtaccaatgttgaccaaggaaagagaattttgaaggaaagtgggatgacattgatcacagcagaagatctcgatgatgctgctaagaaagctgttgaggcaatatcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ATP-grasp_2 Ligase_CoA

Protein Analysis

473

Amino Acids

50.79

Weight (kDa)

5.38

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20420
fragaria_vesca	FvH4_2g20990 FvH4_2g20990 FvH4_2g20990
malus_domestica	MD05G1193100.v1.1 MD10G1179600.v1.1
prunus_persica	Prupe.8G219400_v2.0.a1 Prupe.8G219400_v2.0.a1
pyrus_communis	pycom05g18000 pycom10g15570
rosa_chinensis	RchiOBHm_Chr6g0287371
rosa_laevigata	RLG00000012494
rosa_multiflora	Rmu_sc0007029.1_g000025
rosa_roxburghii	Rroxscaffold_7G00181490
rosa_rugosa	Rorug06G0187700.1
rosa_samantha	Rh6AG298900 Rh6BG304500 Rh6CG305200 Rh6CG313000 Rh6DG296300
rosa_wichuraiana	Rw6G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	484
Acc65I	GGTACC	2 cut(s)	544, 1310
AccB1I	GGYRCC	2 cut(s)	544, 1310
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	1070
AciI	CCGC	4 cut(s)	76, 79, 282, 924
AclWI	GGATC	5 cut(s)	137, 456, 953, 968, 981
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	521, 942, 1335
AcuI	CTGAAG	2 cut(s)	1161, 1161
AfaI	GTAC	4 cut(s)	546, 699, 1287, 1312
AfiI	CCNNNNNNNGG	4 cut(s)	57, 235, 985, 1306
AjnI	CCWGG	2 cut(s)	99, 1146
AluBI	AGCT	7 cut(s)	73, 773, 883, 890, 1064, 1265, 1400
AluI	AGCT	7 cut(s)	73, 773, 883, 890, 1064, 1265, 1400
Alw26I	GTCTC	4 cut(s)	278, 668, 821, 860
AlwI	GGATC	5 cut(s)	137, 456, 953, 968, 981
AlwNI	CAGNNNCTG	2 cut(s)	368, 869
Ama87I	CYCGRG	1 cut(s)	978
AoxI	GGCC	2 cut(s)	150, 1144
ApeKI	GCWGC	9 cut(s)	61, 64, 584, 737, 890, 989, 992, 1262, 1388
ApoI	RAATTY	3 cut(s)	521, 942, 1335
Asp700I	GAANNNNTTC	2 cut(s)	631, 784
Asp718I	GGTACC	2 cut(s)	544, 1310
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	4 cut(s)	16, 193, 1057, 1216
AvaI	CYCGRG	1 cut(s)	978
AvaII	GGWCC	1 cut(s)	464
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BamHI	GGATCC	1 cut(s)	973
BanI	GGYRCC	2 cut(s)	544, 1310
BbsI	GAAGAC	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	9 cut(s)	73, 76, 571, 724, 877, 976, 979, 1274, 1375
BccI	CCATC	4 cut(s)	53, 593, 746, 1019
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	1370, 1404
BciT130I	CCWGG	2 cut(s)	101, 1148
BclI	TGATCA	1 cut(s)	1362
BcoDI	GTCTC	4 cut(s)	278, 668, 821, 860
BfaI	CTAG	2 cut(s)	884, 1118
BglII	AGATCT	1 cut(s)	1375
Bme1390I	CCNGG	2 cut(s)	101, 1148
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	978
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	4 cut(s)	466, 546, 975, 1312
BmrFI	CCNGG	2 cut(s)	101, 1148
BmsI	GCATC	6 cut(s)	321, 571, 724, 886, 1028, 1375
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	260, 1325
Bsa29I	ATCGAT	2 cut(s)	552, 705
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	100, 1324
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 235, 985, 1306
Bse1I	ACTGG	1 cut(s)	1289
BseBI	CCWGG	2 cut(s)	101, 1148
BseCI	ATCGAT	2 cut(s)	552, 705
BseDI	CCNNGG	2 cut(s)	100, 1324
BseGI	GGATG	3 cut(s)	87, 1043, 1359
BseLI	CCNNNNNNNGG	4 cut(s)	57, 235, 985, 1306
BseMII	CTCAG	3 cut(s)	99, 360, 507
BseNI	ACTGG	1 cut(s)	1289
BseXI	GCAGC	9 cut(s)	73, 76, 571, 724, 877, 976, 979, 1274, 1375
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	2 cut(s)	667, 820
BshFI	GGCC	2 cut(s)	152, 1146
BshNI	GGYRCC	2 cut(s)	544, 1310
BshVI	ATCGAT	2 cut(s)	552, 705
BsiHKCI	CYCGRG	1 cut(s)	978
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	4 cut(s)	57, 235, 985, 1306
BsmAI	GTCTC	4 cut(s)	278, 668, 821, 860
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	2 cut(s)	152, 1146
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	978
Bsp143I	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
BspACI	CCGC	4 cut(s)	76, 79, 282, 924
BspANI	GGCC	2 cut(s)	152, 1146
BspCNI	CTCAG	3 cut(s)	100, 361, 508
BspDI	ATCGAT	2 cut(s)	552, 705
BspLI	GGNNCC	4 cut(s)	466, 546, 975, 1312
BspPI	GGATC	5 cut(s)	137, 456, 953, 968, 981
BspT107I	GGYRCC	2 cut(s)	544, 1310
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	1289
BssECI	CCNNGG	2 cut(s)	100, 1324
BssMI	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
BssT1I	CCWWGG	1 cut(s)	1324
Bst2UI	CCWGG	2 cut(s)	101, 1148
Bst4CI	ACNGT	2 cut(s)	690, 843
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	108, 369, 516, 1392
BstF5I	GGATG	3 cut(s)	87, 1043, 1359
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	6 cut(s)	132, 451, 961, 976, 1365, 1378
BstMAI	GTCTC	4 cut(s)	278, 668, 821, 860
BstMBI	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 869, 896, 998, 1061, 1397, 1406
BstNI	CCWGG	2 cut(s)	101, 1148
BstSCI	CCNGG	2 cut(s)	99, 1146
BstV1I	GCAGC	9 cut(s)	73, 76, 571, 724, 877, 976, 979, 1274, 1375
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	973, 1375
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	973, 1375
Bsu15I	ATCGAT	2 cut(s)	552, 705
BsuRI	GGCC	2 cut(s)	152, 1146
BsuTUI	ATCGAT	2 cut(s)	552, 705
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	87, 1043, 1359
BtsIMutI	CAGTG	2 cut(s)	686, 839
Cac8I	GCNNGC	1 cut(s)	481
CaiI	CAGNNNCTG	2 cut(s)	368, 869
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	2 cut(s)	552, 705
CseI	GACGC	1 cut(s)	1125
Csp6I	GTAC	4 cut(s)	545, 698, 1286, 1311
CviAII	CATG	2 cut(s)	1042, 1094
CviQI	GTAC	4 cut(s)	545, 698, 1286, 1311
DdeI	CTNAG	4 cut(s)	108, 369, 516, 1392
DpnI	GATC	6 cut(s)	131, 450, 960, 975, 1364, 1377
DpnII	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
DraI	TTTAAA	2 cut(s)	265, 1008
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	1324
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	1161, 1161
Eco88I	CYCGRG	1 cut(s)	978
EcoRII	CCWGG	2 cut(s)	99, 1146
EcoT14I	CCWWGG	1 cut(s)	1324
EcoT22I	ATGCAT	1 cut(s)	1043
ErhI	CCWWGG	1 cut(s)	1324
FaeI	CATG	2 cut(s)	1045, 1097
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	1041, 1093
FbaI	TGATCA	1 cut(s)	1362
FblI	GTMKAC	1 cut(s)	1070
FokI	GGATG	3 cut(s)	74, 1050, 1366
FspBI	CTAG	2 cut(s)	884, 1118
FspI	TGCGCA	1 cut(s)	484
GlaI	GCGC	1 cut(s)	484
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	152, 1146
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	1125
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	1045, 1097
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	421, 1321
HindII	GTYRAC	2 cut(s)	421, 1321
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	16, 193, 1057, 1216
Hpy166II	GTNNAC	5 cut(s)	289, 421, 1071, 1207, 1321
Hpy188I	TCNGA	4 cut(s)	936, 1037, 1141, 1180
Hpy188III	TCNNGA	5 cut(s)	175, 446, 1118, 1304, 1379
Hpy8I	GTNNAC	5 cut(s)	289, 421, 1071, 1207, 1321
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	172, 1136, 1336
HpyCH4III	ACNGT	2 cut(s)	690, 843
HpyCH4V	TGCA	8 cut(s)	587, 684, 740, 837, 863, 1041, 1244, 1262
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 869, 896, 998, 1061, 1397, 1406
HpyF3I	CTNAG	4 cut(s)	108, 369, 516, 1392
Hsp92II	CATG	2 cut(s)	1045, 1097
HspAI	GCGC	1 cut(s)	483
KpnI	GGTACC	2 cut(s)	548, 1314
Ksp22I	TGATCA	1 cut(s)	1362
Kzo9I	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
LmnI	GCTCC	2 cut(s)	78, 770
Lsp1109I	GCAGC	9 cut(s)	73, 76, 571, 724, 877, 976, 979, 1274, 1375
LweI	GCATC	6 cut(s)	321, 571, 724, 886, 1028, 1375
MaeI	CTAG	2 cut(s)	884, 1118
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	6 cut(s)	131, 450, 960, 975, 1364, 1377
MboI	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
MboII	GAAGA	9 cut(s)	258, 326, 340, 518, 590, 661, 743, 814, 1385
MfeI	CAATTG	2 cut(s)	636, 789
MflI	RGATCY	2 cut(s)	973, 1375
MmeI	TCCRAC	2 cut(s)	672, 825
Mph1103I	ATGCAT	1 cut(s)	1043
MroXI	GAANNNNTTC	2 cut(s)	631, 784
MseI	TTAA	6 cut(s)	222, 264, 1007, 1086, 1164, 1191
MslI	CAYNNNNRTG	1 cut(s)	1202
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	101, 1148
MunI	CAATTG	2 cut(s)	636, 789
Mva1269I	GAATGC	1 cut(s)	1138
MvaI	CCWGG	2 cut(s)	101, 1148
MwoI	GCNNNNNNNGC	7 cut(s)	70, 869, 896, 998, 1061, 1397, 1406
NdeII	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
NlaIII	CATG	2 cut(s)	1045, 1097
NlaIV	GGNNCC	4 cut(s)	466, 546, 975, 1312
NsbI	TGCGCA	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	1043
PctI	GAATGC	1 cut(s)	1138
PdmI	GAANNNNTTC	2 cut(s)	631, 784
PflMI	CCANNNNNTGG	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	99, 1146
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	99, 1146
PspN4I	GGNNCC	4 cut(s)	466, 546, 975, 1312
PspPI	GGNCC	1 cut(s)	464
PstNI	CAGNNNCTG	2 cut(s)	368, 869
PsuI	RGATCY	2 cut(s)	973, 1375
RsaI	GTAC	4 cut(s)	546, 699, 1287, 1312
RsaNI	GTAC	4 cut(s)	545, 698, 1286, 1311
RseI	CAYNNNNRTG	1 cut(s)	1202
SaqAI	TTAA	6 cut(s)	222, 264, 1007, 1086, 1164, 1191
Sau3AI	GATC	6 cut(s)	129, 448, 958, 973, 1362, 1375
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	101, 1148
SfaNI	GCATC	6 cut(s)	321, 571, 724, 886, 1028, 1375
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	1202
SmlI	CTYRAG	3 cut(s)	17, 275, 1304
SmoI	CTYRAG	3 cut(s)	17, 275, 1304
SsiI	CCGC	4 cut(s)	76, 79, 282, 924
SspMI	CTAG	2 cut(s)	884, 1118
StyD4I	CCNGG	2 cut(s)	99, 1146
StyI	CCWWGG	1 cut(s)	1324
TaaI	ACNGT	2 cut(s)	690, 843
TaqI	TCGA	3 cut(s)	552, 705, 1380
TauI	GCSGC	2 cut(s)	81, 926
Tru1I	TTAA	6 cut(s)	222, 264, 1007, 1086, 1164, 1191
Tru9I	TTAA	6 cut(s)	222, 264, 1007, 1086, 1164, 1191
TscAI	CASTG	2 cut(s)	693, 846
TseI	GCWGC	9 cut(s)	61, 64, 584, 737, 890, 989, 992, 1262, 1388
TspDTI	ATGAA	4 cut(s)	183, 591, 744, 1241
TspGWI	ACGGA	2 cut(s)	944, 1289
TspRI	CASTG	2 cut(s)	693, 846
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	521, 942, 1335
XbaI	TCTAGA	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	1070
XmnI	GAANNNNTTC	2 cut(s)	631, 784
XspI	CTAG	2 cut(s)	884, 1118
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.