MD05G1193100.v1.1

Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
32087850 .. 32092147
4298 bp
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UTR
Exon/CDS
Intron
MD05G1193100.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGGTGAGAGGATTACTGAAGCAGCTGACCTCCCGCTCTCTCTCCGTCGCCGGAAAATGGCAGCAGCAACAGCTCCGCCGCCTCAACATCCACGAATATCAGGGGGCTGAATTGATGAGCAAATACGGGGTCAATGTCCCGAAAGGTGTCGCAGCTGGTTCCGTCGATGAAGTCAAAAAGGCAATTCAGGATGCATTTCCCAAGGAAAGTGAGTTGGTGGTTAAAAGCCAAGTCTTGGCTGGTGGAAGAGGCTTGGGAACTTTTAAAAATGGTCTCAAGGGTGGTGTTCACATTGTCCCGACTAACCAAGTTGAAGATATCGCTGGCAAGATGCTTGGGCAAATTCTTGTTACCAAGCAAACAGGTCCTCAGGGAAAAATTGTCAGCAAGGTTTATTTGTGCCAAAAGTTGTCACTTGTCAATGAGATGTACTTTTCTATCATTCTGGATCGCAAATCTGCTGGCCCACTTATAATTGCTTGTGCAAAGGGTGGAACCAGCATTGAAGACCTTGCTGAGAAATTCCCCGATCAGATAATTAAGGTACCTATCGATGTTTTCACCGGAATTACAGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCCAAAAGGAGCTGATAGGAATAGTTCAATCGATCAAGTGAAGAAATTATATAAGCTATTCAGTGAGACTGACTGTACACTGCTGGAAATCAATCCACTTGCAGAAACTGCTGATAACCAACTAGTAGCTGCTGATGCCAAGTTGAACTTTGACGACAATGCTGCTTATCGTCAGAAAGAGATATTTGCTCTTCGCGATCCATCGCAGGAGGATCCCCGAGAGGTGGCTGCTGCCAAAGCAGATTTGAATTATATTGGCTTAGATGGGGAGATTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACTATGGATATCATTAAGTTACACGGGGGAACTCCTGCCAATTTTCTAGATGTTGGCGGAAATGCTTCTGAAAACCAGGTTGTTGAGGCGTTTAAGATATTGACTTCTGATGAGAAGGTGAAAGCCATTTTGGTCAATATATTTGGTGGAATAATGAAATGTGATGTGATTGCAAGTGGAATTGTCAATGCTGCTAAACTGGTTAAACTAGAAGTGCCGGTGATTGTTCGCCTTGAAGGTACCAATGTTGACCAGGGAAAGAGGATTCTCAAGGAAAGTGGAATGGCGCTAATTACAGCAGAAGATCTGGACGATGCCGCTGATAAAGCGGTTAAAGCGCTGAAGAAATAG

Protein Analysis

423

Amino Acids

45.19

Weight (kDa)

6.09

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp_2 PF08442 29 - 237 1e-59 ATP-grasp domain
Citrate_synth_N PF24948 30 - 262 4.3e-12 ATP-citrate synthase ATP-grasp domain
Ligase_CoA PF00549 297 - 417 3.2e-36 CoA-ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
Acc65I GGTACC 2 cut(s) 544, 1157
AccB1I GGYRCC 2 cut(s) 544, 1157
AccB7I CCANNNNNTGG 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 36
AccII CGCG 1 cut(s) 804
AciI CCGC 6 cut(s) 34, 76, 79, 975, 1236, 1247
AclWI GGATC 4 cut(s) 456, 800, 815, 828
AcsI RAATTY 2 cut(s) 342, 521
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 4 cut(s) 431, 546, 685, 1159
AfeI AGCGCT 1 cut(s) 1257
AfiI CCNNNNNNNGG 3 cut(s) 57, 235, 832
AgsI TTSAA 6 cut(s) 314, 506, 636, 754, 856, 1154
AhlI ACTAGT 1 cut(s) 730
AjnI CCWGG 2 cut(s) 993, 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 25, 73, 155, 620, 664, 737, 911
AluI AGCT 7 cut(s) 25, 73, 155, 620, 664, 737, 911
Alw26I GTCTC 2 cut(s) 278, 668
AlwI GGATC 4 cut(s) 456, 800, 815, 828
AlwNI CAGNNNCTG 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 825
Aor51HI AGCGCT 1 cut(s) 1257
AoxI GGCC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 342, 521
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 1 cut(s) 982
Asp718I GGTACC 2 cut(s) 544, 1157
AspLEI GCGC 2 cut(s) 1207, 1258
AspS9I GGNCC 2 cut(s) 365, 464
AsuHPI GGTGA 5 cut(s) 16, 553, 904, 1048, 1150
AvaI CYCGRG 1 cut(s) 825
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 1149, 1182
BamHI GGATCC 1 cut(s) 820
BanI GGYRCC 2 cut(s) 544, 1157
BbsI GAAGAC 1 cut(s) 513
BccI CCATC 3 cut(s) 593, 817, 866
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 2 cut(s) 995, 1172
BcoDI GTCTC 2 cut(s) 278, 668
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 3 cut(s) 731, 965, 1127
BfoI RGCGCY 2 cut(s) 1208, 1259
BglII AGATCT 1 cut(s) 1222
Bme1390I CCNGG 2 cut(s) 995, 1172
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 825
BmgT120I GGNCC 2 cut(s) 365, 464
BmiI GGNNCC 6 cut(s) 160, 496, 546, 609, 822, 1159
BmrFI CCNGG 2 cut(s) 995, 1172
BmsI GCATC 5 cut(s) 181, 321, 571, 733, 1222
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 260, 1172
Bsa29I ATCGAT 2 cut(s) 552, 639
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 201, 1171
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 235, 832
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 1 cut(s) 1122
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 995, 1172
BseCI ATCGAT 2 cut(s) 552, 639
BseDI CCNNGG 2 cut(s) 201, 1171
BseGI GGATG 2 cut(s) 87, 196
BseLI CCNNNNNNNGG 3 cut(s) 57, 235, 832
BseMII CTCAG 2 cut(s) 383, 507
BseNI ACTGG 1 cut(s) 1122
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 544, 1157
BshVI ATCGAT 2 cut(s) 552, 639
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 3 cut(s) 51, 564, 1136
BslFI GGGAC 2 cut(s) 122, 281
BslI CCNNNNNNNGG 3 cut(s) 57, 235, 832
BsmAI GTCTC 2 cut(s) 278, 668
BsmFI GGGAC 2 cut(s) 122, 281
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 825
Bsp1407I TGTACA 1 cut(s) 683
Bsp143I GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
Bsp68I TCGCGA 1 cut(s) 804
BspACI CCGC 6 cut(s) 34, 76, 79, 975, 1236, 1247
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 382, 508
BspDI ATCGAT 2 cut(s) 552, 639
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 6 cut(s) 160, 496, 546, 609, 822, 1159
BspPI GGATC 4 cut(s) 456, 800, 815, 828
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 2 cut(s) 544, 1157
BspTNI GGTCTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 1135
BsrGI TGTACA 1 cut(s) 683
BsrI ACTGG 1 cut(s) 1122
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 2 cut(s) 201, 1171
BssMI GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 995, 1172
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 2 cut(s) 241, 804
BstAPI GCANNNNNTGC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 325, 463
BstDEI CTNAG 3 cut(s) 369, 516, 868
BstF5I GGATG 2 cut(s) 87, 196
BstFNI CGCG 1 cut(s) 804
BstH2I RGCGCY 2 cut(s) 1208, 1259
BstHHI GCGC 2 cut(s) 1207, 1258
BstKTI GATC 6 cut(s) 451, 532, 643, 808, 823, 1225
BstMAI GTCTC 2 cut(s) 278, 668
BstMBI GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
BstMWI GCNNNNNNNGC 7 cut(s) 70, 716, 743, 845, 908, 1244, 1253
BstNI CCWGG 2 cut(s) 995, 1172
BstSCI CCNGG 2 cut(s) 993, 1170
BstUI CGCG 1 cut(s) 804
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 820, 1222
BstYI RGATCY 2 cut(s) 820, 1222
Bsu15I ATCGAT 2 cut(s) 552, 639
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 2 cut(s) 552, 639
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 87, 196
BtsI GCAGTG 1 cut(s) 686
BtsIMutI CAGTG 2 cut(s) 676, 686
BtuMI TCGCGA 1 cut(s) 804
Cac8I GCNNGC 2 cut(s) 325, 463
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 2 cut(s) 1207, 1258
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 2 cut(s) 365, 464
ClaI ATCGAT 2 cut(s) 552, 639
CsiI ACCWGGT 1 cut(s) 993
Csp6I GTAC 4 cut(s) 430, 545, 684, 1158
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviAII CATG 1 cut(s) 889
CviQI GTAC 4 cut(s) 430, 545, 684, 1158
DdeI CTNAG 3 cut(s) 369, 516, 868
DpnI GATC 6 cut(s) 450, 531, 642, 807, 822, 1224
DpnII GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 241, 804
EarI CTCTTC 2 cut(s) 241, 804
EciI GGCGGA 2 cut(s) 65, 990
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 278
Eco32I GATATC 2 cut(s) 319, 928
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 1257
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 993, 1170
EcoRV GATATC 2 cut(s) 319, 928
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 892
FaiI YATR 8 cut(s) 473, 658, 660, 861, 890, 914, 923, 1058
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 2 cut(s) 122, 281
FatI CATG 1 cut(s) 888
FauI CCCGC 1 cut(s) 41
FokI GGATG 2 cut(s) 74, 203
FspBI CTAG 3 cut(s) 731, 965, 1127
GlaI GCGC 2 cut(s) 1206, 1257
HaeII RGCGCY 2 cut(s) 1208, 1259
HaeIII GGCC 1 cut(s) 465
HapII CCGG 3 cut(s) 51, 564, 1136
HhaI GCGC 2 cut(s) 1207, 1258
Hin1II CATG 1 cut(s) 892
Hin6I GCGC 2 cut(s) 1205, 1256
HinP1I GCGC 2 cut(s) 1205, 1256
HincII GTYRAC 1 cut(s) 1168
HindII GTYRAC 1 cut(s) 1168
HinfI GANTC 1 cut(s) 1183
HpaII CCGG 3 cut(s) 51, 564, 1136
HphI GGTGA 5 cut(s) 16, 553, 904, 1048, 1150
Hpy166II GTNNAC 3 cut(s) 289, 686, 1168
Hpy188I TCNGA 4 cut(s) 534, 783, 988, 1027
Hpy188III TCNNGA 7 cut(s) 139, 188, 298, 446, 803, 965, 1226
Hpy8I GTNNAC 3 cut(s) 289, 686, 1168
Hpy99I CGWCG 2 cut(s) 50, 167
HpyAV CCTTC 2 cut(s) 1027, 1148
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4V TGCA 7 cut(s) 194, 485, 587, 710, 888, 902, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 716, 743, 845, 908, 1244, 1253
HpyF3I CTNAG 3 cut(s) 369, 516, 868
Hsp92II CATG 1 cut(s) 892
HspAI GCGC 2 cut(s) 1205, 1256
KpnI GGTACC 2 cut(s) 548, 1161
Kzo9I GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 3 cut(s) 78, 613, 617
LweI GCATC 5 cut(s) 181, 321, 571, 733, 1222
MabI ACCWGGT 1 cut(s) 993
MaeI CTAG 3 cut(s) 731, 965, 1127
MaeIII GTNAC 3 cut(s) 349, 411, 936
MalI GATC 6 cut(s) 450, 531, 642, 807, 822, 1224
MbiI CCGCTC 1 cut(s) 36
MboI GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
MboII GAAGA 7 cut(s) 258, 326, 518, 590, 661, 791, 1232
MflI RGATCY 2 cut(s) 820, 1222
MnlI CCTC 8 cut(s) 40, 92, 242, 378, 811, 823, 997, 1173
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 982
MseI TTAA 7 cut(s) 222, 264, 540, 933, 1011, 1122, 1251
MspA1I CMGCKG 3 cut(s) 25, 155, 1238
MspI CCGG 3 cut(s) 51, 564, 1136
MspR9I CCNGG 2 cut(s) 995, 1172
MvaI CCWGG 2 cut(s) 995, 1172
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 7 cut(s) 70, 716, 743, 845, 908, 1244, 1253
NdeII GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
NlaIII CATG 1 cut(s) 892
NlaIV GGNNCC 6 cut(s) 160, 496, 546, 609, 822, 1159
NmuCI GTSAC 1 cut(s) 411
NruI TCGCGA 1 cut(s) 804
NsiI ATGCAT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 982
PfeI GAWTC 1 cut(s) 1183
PflMI CCANNNNNTGG 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 365
PsiI TTATAA 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 993, 1170
PspGI CCWGG 2 cut(s) 993, 1170
PspN4I GGNNCC 6 cut(s) 160, 496, 546, 609, 822, 1159
PspPI GGNCC 2 cut(s) 365, 464
PspPPI RGGWCCY 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 820, 1222
PvuII CAGCTG 2 cut(s) 25, 155
RruI TCGCGA 1 cut(s) 804
RsaI GTAC 4 cut(s) 431, 546, 685, 1159
RsaNI GTAC 4 cut(s) 430, 545, 684, 1158
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 7 cut(s) 222, 264, 540, 933, 1011, 1122, 1251
Sau3AI GATC 6 cut(s) 448, 529, 640, 805, 820, 1222
Sau96I GGNCC 2 cut(s) 365, 464
ScrFI CCNGG 2 cut(s) 995, 1172
SexAI ACCWGGT 1 cut(s) 993
SfaNI GCATC 5 cut(s) 181, 321, 571, 733, 1222
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 275, 1187
SmoI CTYRAG 2 cut(s) 275, 1187
SpeI ACTAGT 1 cut(s) 730
SsiI CCGC 6 cut(s) 34, 76, 79, 975, 1236, 1247
SspMI CTAG 3 cut(s) 731, 965, 1127
StyD4I CCNGG 2 cut(s) 993, 1170
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 683
TaqI TCGA 3 cut(s) 165, 552, 639
TatI WGTACW 2 cut(s) 429, 683
TauI GCSGC 2 cut(s) 81, 1238
TfiI GAWTC 1 cut(s) 1183
Tru1I TTAA 7 cut(s) 222, 264, 540, 933, 1011, 1122, 1251
Tru9I TTAA 7 cut(s) 222, 264, 540, 933, 1011, 1122, 1251
TscAI CASTG 2 cut(s) 676, 693
TseFI GTSAC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 3 cut(s) 183, 591, 1088
TspGWI ACGGA 2 cut(s) 34, 151
TspRI CASTG 2 cut(s) 676, 693
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 2 cut(s) 342, 521
XbaI TCTAGA 1 cut(s) 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 982
XspI CTAG 3 cut(s) 731, 965, 1127
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.