pycom10g15570

Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
18801529 .. 18805579
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15570.4

Sequence Viewer

Length: 1272 bp
ATGGTGAGAGGATTACTGAAGCAGCTGACCTTCCGCTCTCTCTCCGTCGCCGGAAAATGGCAGCAGCAACAGCTCCGCTGCCTTAACATCCACGAATATCAGGGGGCTGAATTGATGAGCAAATACGGGGTCAATGTCCCGAAAGGTGTCGCGGCTGGTTCCGTCGATGAAGTCAAAAAGGCAATTCAGGATGTATTCTCCAAGGAAAGTGAGTTGGTGGTTAAAAGCCAAGTCTTGGCTGGTGGAAGAGGCTTGGGAACATTTAAAAATGGTCTCAAGGGCGGTGTTCACATTGTCCCGACTAACCAAGCTGAAGATATTGCTGGCAAGATGCTTGGGCAAATTCTTGTTACCAAACAAACAGGTCCTCAGGGAAAAATTGTCAGCAAGGTTTATTTGTGCCAAAAGTTGTCACTTGTCAATGAGATGTACTTTTCTATCATTCTAGATCGCAAATCAGCCGGCCCACTTATAATTGCCTGTGCAAAGGGTGGAACCAGCATTGAAGACCTTGCTGAGAAATTCCCGATCGATCAGATAATTAAGGTACCTATTGATGTTTTCACCGGAATTACAGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCCAAAAGGGGCTCATAGGAATAGTTCAATCGATCAAGTGAAAAAATTATATAAGCTATTCAGTGAGACTGACTGTACATTGCTGGAAATCAATCCACTTGCAGAGACTGCTGATAACCAGTTAGTAGCTGCTGATGCCAAGTTGAACTTTGACGACAATGCTGCTTATCGTCAGAAAGAGATATTTGCTCTTCGTGATCCATCGCAGGAGGATCCCCGAGAGGTGGCTGCTGCCAAAGCAGATTTGAATTATATTGGCTTAGATGGGGAGATTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATCATTAAATTACATGGCGGAACTCCTGCCAATTTTCTCGATGTAGGCGGAAATGCTTCGGAAAACCAGGTTGTTGAGGCATTTAAGATTTTGACTTCTGATGAGAAGGTGAAAGCGATTTTGGTCAATATCTTTGGTGGAATAATGAAATGTGATGTGATTGCAAGTGGAATTGTCAATGCTGCTAAGCAGGTTAAACTAGAAGTGCCAGTGGTTGTTCGTCTTGAAGGTACCAACGTCGACCAAGGAAGGACGATTCTCAAGGAAAGTGGAATGGCACTAATTACAGCCGAAGATTTGGACGATGCTGCTGATAAAGCGGTTAAAGCACTGAAGAAATAG

Protein Analysis

424

Amino Acids

45.29

Weight (kDa)

5.97

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
Acc36I ACCTGC 1 cut(s) 1111
Acc65I GGTACC 2 cut(s) 547, 1160
AccB1I GGYRCC 2 cut(s) 547, 1160
AccB7I CCANNNNNTGG 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 1170
AccII CGCG 1 cut(s) 152
AciI CCGC 7 cut(s) 34, 76, 152, 282, 948, 978, 1250
AclWI GGATC 3 cut(s) 803, 818, 831
AcsI RAATTY 2 cut(s) 342, 521
AcuI CTGAAG 2 cut(s) 38, 333
AfaI GTAC 4 cut(s) 431, 549, 688, 1162
AfiI CCNNNNNNNGG 3 cut(s) 57, 235, 835
AgsI TTSAA 5 cut(s) 506, 639, 757, 859, 1157
AjnI CCWGG 1 cut(s) 996
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
AluBI AGCT 6 cut(s) 25, 73, 311, 667, 740, 914
AluI AGCT 6 cut(s) 25, 73, 311, 667, 740, 914
Alw26I GTCTC 3 cut(s) 278, 671, 710
AlwI GGATC 3 cut(s) 803, 818, 831
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 828
AoxI GGCC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 342, 521
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 1 cut(s) 985
Asp718I GGTACC 2 cut(s) 547, 1160
AspS9I GGNCC 2 cut(s) 365, 464
AsuHPI GGTGA 4 cut(s) 16, 556, 907, 1051
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 1152, 1185
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 2 cut(s) 547, 1160
BanII GRGCYC 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 513
BccI CCATC 3 cut(s) 596, 820, 869
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 1 cut(s) 998
BcoDI GTCTC 3 cut(s) 278, 671, 710
BfaI CTAG 2 cut(s) 446, 1130
BfuAI ACCTGC 1 cut(s) 1111
BlpI GCTNAGC 1 cut(s) 1116
Bme1390I CCNGG 1 cut(s) 998
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 2 cut(s) 365, 464
BmiI GGNNCC 6 cut(s) 160, 496, 549, 612, 825, 1162
BmrFI CCNGG 1 cut(s) 998
BmsI GCATC 4 cut(s) 321, 574, 736, 1225
BpiI GAAGAC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 260, 1175
Bsa29I ATCGAT 2 cut(s) 531, 642
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 201, 1174
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 235, 835
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 730, 1139
Bse21I CCTNAGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 1 cut(s) 998
BseCI ATCGAT 2 cut(s) 531, 642
BseDI CCNNGG 2 cut(s) 201, 1174
BseGI GGATG 2 cut(s) 87, 196
BseLI CCNNNNNNNGG 3 cut(s) 57, 235, 835
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 2 cut(s) 383, 507
BseNI ACTGG 2 cut(s) 730, 1139
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 547, 1160
BshVI ATCGAT 2 cut(s) 531, 642
BsiEI CGRYCG 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 3 cut(s) 51, 462, 567
BslFI GGGAC 2 cut(s) 122, 281
BslI CCNNNNNNNGG 3 cut(s) 57, 235, 835
BsmAI GTCTC 3 cut(s) 278, 671, 710
BsmFI GGGAC 2 cut(s) 122, 281
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 625
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 6 cut(s) 448, 528, 532, 643, 808, 823
Bsp1720I GCTNAGC 1 cut(s) 1116
BspACI CCGC 7 cut(s) 34, 76, 152, 282, 948, 978, 1250
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 382, 508
BspDI ATCGAT 2 cut(s) 531, 642
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 6 cut(s) 160, 496, 549, 612, 825, 1162
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 3 cut(s) 803, 818, 831
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 2 cut(s) 547, 1160
BspTNI GGTCTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 2 cut(s) 730, 1139
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 201, 1174
BssMI GATC 6 cut(s) 448, 528, 532, 643, 808, 823
BssT1I CCWWGG 2 cut(s) 201, 1174
Bst2UI CCWGG 1 cut(s) 998
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 2 cut(s) 241, 807
BstAPI GCANNNNNTGC 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 325, 463
BstDEI CTNAG 4 cut(s) 369, 516, 871, 1116
BstF5I GGATG 2 cut(s) 87, 196
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 6 cut(s) 451, 531, 535, 646, 811, 826
BstMAI GTCTC 3 cut(s) 278, 671, 710
BstMBI GATC 6 cut(s) 448, 528, 532, 643, 808, 823
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 7 cut(s) 70, 719, 746, 848, 911, 1247, 1256
BstNI CCWGG 1 cut(s) 998
BstSCI CCNGG 1 cut(s) 996
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 2 cut(s) 531, 642
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 2 cut(s) 531, 642
BtgZI GCGATG 1 cut(s) 798
BtsCI GGATG 2 cut(s) 87, 196
BtsIMutI CAGTG 3 cut(s) 679, 1146, 1259
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 2 cut(s) 325, 463
CaiI CAGNNNCTG 1 cut(s) 719
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 365, 464
ClaI ATCGAT 2 cut(s) 531, 642
CsiI ACCWGGT 1 cut(s) 996
Csp6I GTAC 4 cut(s) 430, 548, 687, 1161
CspCI CAANNNNNGTGG 2 cut(s) 1180, 1215
CviAII CATG 2 cut(s) 892, 944
CviQI GTAC 4 cut(s) 430, 548, 687, 1161
DdeI CTNAG 4 cut(s) 369, 516, 871, 1116
DpnI GATC 6 cut(s) 450, 530, 534, 645, 810, 825
DpnII GATC 6 cut(s) 448, 528, 532, 643, 808, 823
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 241, 807
EarI CTCTTC 2 cut(s) 241, 807
EciI GGCGGA 2 cut(s) 963, 993
Eco130I CCWWGG 2 cut(s) 201, 1174
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 1 cut(s) 278
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 38, 333
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 828
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 996
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 2 cut(s) 201, 1174
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 2 cut(s) 201, 1174
FaeI CATG 2 cut(s) 895, 947
FaiI YATR 8 cut(s) 473, 627, 661, 663, 864, 893, 917, 945
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 2 cut(s) 122, 281
FatI CATG 2 cut(s) 891, 943
FblI GTMKAC 1 cut(s) 1170
FokI GGATG 2 cut(s) 74, 203
FriOI GRGCYC 1 cut(s) 625
FspBI CTAG 2 cut(s) 446, 1130
HaeIII GGCC 1 cut(s) 465
HapII CCGG 3 cut(s) 51, 462, 567
Hin1II CATG 2 cut(s) 895, 947
HincII GTYRAC 1 cut(s) 1171
HindII GTYRAC 1 cut(s) 1171
HinfI GANTC 1 cut(s) 1186
HpaII CCGG 3 cut(s) 51, 462, 567
HphI GGTGA 4 cut(s) 16, 556, 907, 1051
Hpy166II GTNNAC 2 cut(s) 289, 1171
Hpy188I TCNGA 4 cut(s) 537, 786, 991, 1030
Hpy188III TCNNGA 8 cut(s) 139, 188, 298, 446, 526, 806, 968, 1154
Hpy8I GTNNAC 2 cut(s) 289, 1171
Hpy99I CGWCG 3 cut(s) 50, 167, 1172
HpyAV CCTTC 4 cut(s) 40, 1030, 1151, 1173
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 1 cut(s) 1167
HpyCH4V TGCA 6 cut(s) 485, 590, 713, 891, 905, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 719, 746, 848, 911, 1247, 1256
HpyF3I CTNAG 4 cut(s) 369, 516, 871, 1116
HpySE526I ACGT 1 cut(s) 1167
Hsp92II CATG 2 cut(s) 895, 947
KpnI GGTACC 2 cut(s) 551, 1164
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
Kzo9I GATC 6 cut(s) 448, 528, 532, 643, 808, 823
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 78, 616
LweI GCATC 4 cut(s) 321, 574, 736, 1225
MabI ACCWGGT 1 cut(s) 996
MaeI CTAG 2 cut(s) 446, 1130
MaeII ACGT 1 cut(s) 1167
MaeIII GTNAC 2 cut(s) 349, 411
MalI GATC 6 cut(s) 450, 530, 534, 645, 810, 825
MbiI CCGCTC 1 cut(s) 36
MboI GATC 6 cut(s) 448, 528, 532, 643, 808, 823
MboII GAAGA 6 cut(s) 258, 326, 518, 593, 794, 1235
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 625
MnlI CCTC 5 cut(s) 242, 378, 814, 826, 1000
MroNI GCCGGC 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 985
MseI TTAA 8 cut(s) 84, 222, 264, 543, 936, 1014, 1125, 1254
MspA1I CMGCKG 2 cut(s) 25, 78
MspI CCGG 3 cut(s) 51, 462, 567
MspR9I CCNGG 1 cut(s) 998
MvaI CCWGG 1 cut(s) 998
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 7 cut(s) 70, 719, 746, 848, 911, 1247, 1256
NaeI GCCGGC 1 cut(s) 463
NdeII GATC 6 cut(s) 448, 528, 532, 643, 808, 823
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 2 cut(s) 895, 947
NlaIV GGNNCC 6 cut(s) 160, 496, 549, 612, 825, 1162
NmuCI GTSAC 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 807
PdiI GCCGGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 985
PfeI GAWTC 1 cut(s) 1186
PflMI CCANNNNNTGG 1 cut(s) 235
Ple19I CGATCG 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 365
PsiI TTATAA 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 996
PspGI CCWGG 1 cut(s) 996
PspN4I GGNNCC 6 cut(s) 160, 496, 549, 612, 825, 1162
PspPI GGNCC 2 cut(s) 365, 464
PspPPI RGGWCCY 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 823
PvuI CGATCG 1 cut(s) 531
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 4 cut(s) 431, 549, 688, 1162
RsaNI GTAC 4 cut(s) 430, 548, 687, 1161
SalI GTCGAC 1 cut(s) 1169
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 8 cut(s) 84, 222, 264, 543, 936, 1014, 1125, 1254
Sau3AI GATC 6 cut(s) 448, 528, 532, 643, 808, 823
Sau96I GGNCC 2 cut(s) 365, 464
ScrFI CCNGG 1 cut(s) 998
SduI GDGCHC 1 cut(s) 625
SexAI ACCWGGT 1 cut(s) 996
SfaNI GCATC 4 cut(s) 321, 574, 736, 1225
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 275, 1190
SmoI CTYRAG 2 cut(s) 275, 1190
SsiI CCGC 7 cut(s) 34, 76, 152, 282, 948, 978, 1250
SspMI CTAG 2 cut(s) 446, 1130
StyD4I CCNGG 1 cut(s) 996
StyI CCWWGG 2 cut(s) 201, 1174
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 1 cut(s) 1170
TaqI TCGA 5 cut(s) 165, 531, 642, 969, 1170
TatI WGTACW 2 cut(s) 429, 686
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 1186
Tru1I TTAA 8 cut(s) 84, 222, 264, 543, 936, 1014, 1125, 1254
Tru9I TTAA 8 cut(s) 84, 222, 264, 543, 936, 1014, 1125, 1254
TscAI CASTG 3 cut(s) 679, 1146, 1266
TseFI GTSAC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 3 cut(s) 183, 594, 1091
TspGWI ACGGA 2 cut(s) 34, 151
TspRI CASTG 3 cut(s) 679, 1146, 1266
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 2 cut(s) 342, 521
XbaI TCTAGA 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 1170
XmnI GAANNNNTTC 1 cut(s) 985
XspI CTAG 2 cut(s) 446, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.