Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010207

Physical Location & Seq

Genomic Coordinates Forward (+)

53465261 .. 53469546

Gene Structure 4286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTGAGAGGATTACTCAAGCACCTTACTTCTCGCTCTCTCTCCATCGCCGGAAAATGGCAGCAGCAACAGCTCCGCCGCCTCAACATCCACGAATACCAGGGGGCTGAGTTGATGAGCAAATATGGGATCAATGTTCCCAAAGGTGTGGCCGTCGGTAGTGTTGATGAAGTCAAGAAGGTGATAGAGAGTGTTTTCCCCAATCAAAGTGAGTTGGTGGTTAAGAGCCAAGTTTTGGCTGGTGGAAGAGGTTTGGGAACATTTAAAAATGGTCTCAAGGGCGGTGTTCACATTGTCAAGGCTGACCAAGTTGAAGAACTTGCTGGGAAGATGCTTGGGCAGATACTTGTTACAAAACAAACAGGTGCTGAGGGAAAAATTGTCAGCAAGGTGTATTTGTGTGAAAAATTGTCACTTGTCAACGAAATGTATTTTGCTATTACTCTGGATCGCAAAAGTGCTGGTCCCCTTATTATTGCCTGCGCAAAGGGAGGAACGAGCATTGAAGACCTTGCTGAGAAATTCCCTGATATGATAGTAAAGGTACCTATCGATGTTTTCAAAGGAATTACAGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGGGGCTGATAGAAATAGTTCAATTGAACAAGTGAAGAAATTATATAATCTGTTCTGTGAGACTGACTGCACACTGTTGGAAATCAACCCACTTGCAGAGACTGCTGATAACCAGCTAGTAGCTGCTGATGCGAAGTTGAACTTTGATGACAACGCCGCTTTTCGTCAGAAAGAAATTTTTGCCCTCCGTGATCCTACACAGGAGGATCCCCGAGAGGTGGCTGCTGCCAAAGCAGATTTAAACTATATTGGTTTAGATGGGGAAATTGGATGCATGGTGAATGGTGCTGGTTTAGCTATGTCTACAATGGATATTATTAAACTACATGGAGGAACTCCTGCCAATTTTCTAGATGTAGGTGGGAATGCGTCTGAAGGCCAGGTTGTTGAGGCATTCAAGATTTTGACTTCAGATGACAAAGTTAAAGCTATTTTGGTGAACATCTTTGGTGGAATAATGAAATGTGATGTGATTGCAAGTGGAATTGTCAATGCAGCTAAACAGGTTCAACTAAAAGTACCAGTTGTTGTCCGTCTTGAGGGTACCAATGTTGACCAAGGAAAGAGAATTTTGAAGGAAAGTGGGATGACATTGATCACAGCAGAAGATCTCGATGATGCTGCTAAGAAAGCTGTTGAGGCAATATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ATP-grasp_2 Ligase_CoA

Protein Analysis

422

Amino Acids

45.22

Weight (kDa)

5.8

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-grasp_2	PF08442	29 - 237	2.6e-61	ATP-grasp domain
Citrate_synth_N	PF24948	30 - 262	5e-13	ATP-citrate synthase ATP-grasp domain
Ligase_CoA	PF00549	297 - 417	4.1e-36	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20420
fragaria_vesca	FvH4_2g20990 FvH4_2g20990 FvH4_2g20990
malus_domestica	MD05G1193100.v1.1 MD10G1179600.v1.1
prunus_persica	Prupe.8G219400_v2.0.a1 Prupe.8G219400_v2.0.a1
pyrus_communis	pycom05g18000 pycom10g15570
rosa_chinensis	RchiOBHm_Chr6g0287371
rosa_laevigata	RLG00000012494
rosa_multiflora	Rmu_sc0007029.1_g000025
rosa_roxburghii	Rroxscaffold_7G00181490
rosa_rugosa	Rorug06G0187700.1
rosa_samantha	Rh6AG298900 Rh6BG304500 Rh6CG305200 Rh6CG313000 Rh6DG296300
rosa_wichuraiana	Rw6G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	484
Acc65I	GGTACC	2 cut(s)	544, 1157
AccB1I	GGYRCC	2 cut(s)	544, 1157
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	917
AciI	CCGC	4 cut(s)	76, 79, 282, 771
AclWI	GGATC	5 cut(s)	137, 456, 800, 815, 828
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	521, 789, 1182
AcuI	CTGAAG	2 cut(s)	1008, 1008
AfaI	GTAC	3 cut(s)	546, 1134, 1159
AfiI	CCNNNNNNNGG	4 cut(s)	57, 235, 832, 1153
AgsI	TTSAA	9 cut(s)	314, 506, 562, 636, 641, 754, 1012, 1124, 1189
AjnI	CCWGG	2 cut(s)	99, 993
AluBI	AGCT	7 cut(s)	73, 730, 737, 911, 1043, 1112, 1247
AluI	AGCT	7 cut(s)	73, 730, 737, 911, 1043, 1112, 1247
Alw26I	GTCTC	3 cut(s)	278, 668, 707
AlwI	GGATC	5 cut(s)	137, 456, 800, 815, 828
AlwNI	CAGNNNCTG	2 cut(s)	368, 716
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	2 cut(s)	150, 991
ApeKI	GCWGC	8 cut(s)	61, 64, 584, 737, 836, 839, 1109, 1235
ApoI	RAATTY	3 cut(s)	521, 789, 1182
Asp700I	GAANNNNTTC	1 cut(s)	631
Asp718I	GGTACC	2 cut(s)	544, 1157
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	4 cut(s)	16, 193, 904, 1063
AvaI	CYCGRG	1 cut(s)	825
AvaII	GGWCC	1 cut(s)	464
BaeI	ACNNNNGTAYC	2 cut(s)	1149, 1182
BamHI	GGATCC	1 cut(s)	820
BanI	GGYRCC	2 cut(s)	544, 1157
BbsI	GAAGAC	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	8 cut(s)	73, 76, 571, 724, 823, 826, 1121, 1222
BccI	CCATC	3 cut(s)	53, 593, 866
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	1217, 1251
BciT130I	CCWGG	2 cut(s)	101, 995
BclI	TGATCA	1 cut(s)	1209
BcoDI	GTCTC	3 cut(s)	278, 668, 707
BfaI	CTAG	2 cut(s)	731, 965
BglII	AGATCT	1 cut(s)	1222
Bme1390I	CCNGG	2 cut(s)	101, 995
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	825
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	4 cut(s)	466, 546, 822, 1159
BmrFI	CCNGG	2 cut(s)	101, 995
BmsI	GCATC	5 cut(s)	321, 571, 733, 875, 1222
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	260, 1172
Bsa29I	ATCGAT	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	100, 1171
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 235, 832, 1153
Bse1I	ACTGG	1 cut(s)	1136
BseBI	CCWGG	2 cut(s)	101, 995
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	100, 1171
BseGI	GGATG	3 cut(s)	87, 890, 1206
BseLI	CCNNNNNNNGG	4 cut(s)	57, 235, 832, 1153
BseMII	CTCAG	3 cut(s)	99, 360, 507
BseNI	ACTGG	1 cut(s)	1136
BseXI	GCAGC	8 cut(s)	73, 76, 571, 724, 823, 826, 1121, 1222
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	152, 993
BshNI	GGYRCC	2 cut(s)	544, 1157
BshVI	ATCGAT	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	825
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	4 cut(s)	57, 235, 832, 1153
BsmAI	GTCTC	3 cut(s)	278, 668, 707
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	2 cut(s)	985, 1007
BsnI	GGCC	2 cut(s)	152, 993
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	825
Bsp143I	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
BspACI	CCGC	4 cut(s)	76, 79, 282, 771
BspANI	GGCC	2 cut(s)	152, 993
BspCNI	CTCAG	3 cut(s)	100, 361, 508
BspDI	ATCGAT	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	466, 546, 822, 1159
BspPI	GGATC	5 cut(s)	137, 456, 800, 815, 828
BspT107I	GGYRCC	2 cut(s)	544, 1157
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	1136
BssECI	CCNNGG	2 cut(s)	100, 1171
BssMI	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
BssT1I	CCWWGG	1 cut(s)	1171
Bst2UI	CCWGG	2 cut(s)	101, 995
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	108, 369, 516, 1239
BstF5I	GGATG	3 cut(s)	87, 890, 1206
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	6 cut(s)	132, 451, 808, 823, 1212, 1225
BstMAI	GTCTC	3 cut(s)	278, 668, 707
BstMBI	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 716, 743, 845, 908, 1244, 1253
BstNI	CCWGG	2 cut(s)	101, 995
BstSCI	CCNGG	2 cut(s)	99, 993
BstV1I	GCAGC	8 cut(s)	73, 76, 571, 724, 823, 826, 1121, 1222
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	820, 1222
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	820, 1222
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	152, 993
BsuTUI	ATCGAT	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	87, 890, 1206
BtsIMutI	CAGTG	1 cut(s)	686
Cac8I	GCNNGC	1 cut(s)	481
CaiI	CAGNNNCTG	2 cut(s)	368, 716
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	1 cut(s)	552
CseI	GACGC	1 cut(s)	972
Csp6I	GTAC	3 cut(s)	545, 1133, 1158
CviAII	CATG	2 cut(s)	889, 941
CviQI	GTAC	3 cut(s)	545, 1133, 1158
DdeI	CTNAG	4 cut(s)	108, 369, 516, 1239
DpnI	GATC	6 cut(s)	131, 450, 807, 822, 1211, 1224
DpnII	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
DraI	TTTAAA	2 cut(s)	265, 855
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	1171
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	1008, 1008
Eco88I	CYCGRG	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	99, 993
EcoT14I	CCWWGG	1 cut(s)	1171
EcoT22I	ATGCAT	1 cut(s)	890
ErhI	CCWWGG	1 cut(s)	1171
FaeI	CATG	2 cut(s)	892, 944
FaiI	YATR	8 cut(s)	126, 533, 658, 660, 861, 890, 914, 942
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	888, 940
FbaI	TGATCA	1 cut(s)	1209
FblI	GTMKAC	1 cut(s)	917
FokI	GGATG	3 cut(s)	74, 897, 1213
FspBI	CTAG	2 cut(s)	731, 965
FspI	TGCGCA	1 cut(s)	484
GlaI	GCGC	1 cut(s)	484
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	152, 993
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	972
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	892, 944
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	421, 1168
HindII	GTYRAC	2 cut(s)	421, 1168
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	16, 193, 904, 1063
Hpy166II	GTNNAC	5 cut(s)	289, 421, 918, 1054, 1168
Hpy188I	TCNGA	3 cut(s)	783, 988, 1027
Hpy188III	TCNNGA	6 cut(s)	175, 446, 965, 1012, 1151, 1226
Hpy8I	GTNNAC	5 cut(s)	289, 421, 918, 1054, 1168
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	172, 983, 1183
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4V	TGCA	6 cut(s)	587, 684, 710, 888, 1091, 1109
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 716, 743, 845, 908, 1244, 1253
HpyF3I	CTNAG	4 cut(s)	108, 369, 516, 1239
Hsp92II	CATG	2 cut(s)	892, 944
HspAI	GCGC	1 cut(s)	483
KpnI	GGTACC	2 cut(s)	548, 1161
Ksp22I	TGATCA	1 cut(s)	1209
Kzo9I	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	8 cut(s)	73, 76, 571, 724, 823, 826, 1121, 1222
LweI	GCATC	5 cut(s)	321, 571, 733, 875, 1222
MaeI	CTAG	2 cut(s)	731, 965
MaeIII	GTNAC	2 cut(s)	349, 411
MalI	GATC	6 cut(s)	131, 450, 807, 822, 1211, 1224
MboI	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
MboII	GAAGA	7 cut(s)	258, 326, 340, 518, 590, 661, 1232
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	820, 1222
MmeI	TCCRAC	1 cut(s)	672
Mph1103I	ATGCAT	1 cut(s)	890
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	5 cut(s)	222, 264, 854, 933, 1038
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	101, 995
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	985, 1007
MvaI	CCWGG	2 cut(s)	101, 995
MwoI	GCNNNNNNNGC	7 cut(s)	70, 716, 743, 845, 908, 1244, 1253
NdeII	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
NlaIII	CATG	2 cut(s)	892, 944
NlaIV	GGNNCC	4 cut(s)	466, 546, 822, 1159
NmuCI	GTSAC	1 cut(s)	411
NsbI	TGCGCA	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	890
PctI	GAATGC	2 cut(s)	985, 1007
PdmI	GAANNNNTTC	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	99, 993
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	99, 993
PspN4I	GGNNCC	4 cut(s)	466, 546, 822, 1159
PspPI	GGNCC	1 cut(s)	464
PstNI	CAGNNNCTG	2 cut(s)	368, 716
PsuI	RGATCY	2 cut(s)	820, 1222
RsaI	GTAC	3 cut(s)	546, 1134, 1159
RsaNI	GTAC	3 cut(s)	545, 1133, 1158
SaqAI	TTAA	5 cut(s)	222, 264, 854, 933, 1038
Sau3AI	GATC	6 cut(s)	129, 448, 805, 820, 1209, 1222
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	101, 995
SfaNI	GCATC	5 cut(s)	321, 571, 733, 875, 1222
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	3 cut(s)	17, 275, 1151
SmoI	CTYRAG	3 cut(s)	17, 275, 1151
SsiI	CCGC	4 cut(s)	76, 79, 282, 771
SspMI	CTAG	2 cut(s)	731, 965
StyD4I	CCNGG	2 cut(s)	99, 993
StyI	CCWWGG	1 cut(s)	1171
TaaI	ACNGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	552, 1227
TauI	GCSGC	2 cut(s)	81, 773
Tru1I	TTAA	5 cut(s)	222, 264, 854, 933, 1038
Tru9I	TTAA	5 cut(s)	222, 264, 854, 933, 1038
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	8 cut(s)	61, 64, 584, 737, 836, 839, 1109, 1235
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	3 cut(s)	183, 591, 1088
TspGWI	ACGGA	2 cut(s)	791, 1136
TspRI	CASTG	1 cut(s)	693
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	521, 789, 1182
XbaI	TCTAGA	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	2 cut(s)	731, 965
Zsp2I	ATGCAT	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.