Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015837

Physical Location & Seq

Genomic Coordinates Reverse (-)

8924894 .. 8925804

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGATTTCTCCTTACTGTCTGCTTTCTCTTCTTCCCATTTTCCTCCTCTCTGGTTTCTCCCTTTCATATGATGAATTTGATGGTCACGCAGCAACAAGCAGAGCTCTTCTTCAGACAAGGACAACCTGCAAAGAAGATTTTGCTAACAAGAACTACACAATCATAACAAGCAGATGCAAAGGACCAAATTATCCGGCAAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAAGTTCTTAACGACGAAAAGAACGATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTACGGTCGTTATCCTCCTGGAATCTTTGCCAACATGTGTAAAGAGGGCAAAGAAGGTCTTGACTGCACTGATGTCACCCAGTCCGCATCCGCAACTTCTGATTCTATCCCACGTGCCTCCACAACTGCATCTCTCGCGGTTCTTTCTACCTTCCTCGTTCTGTGTCTTTTGTTCTTATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.78

Weight (kDa)

4.88

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	47 - 123	9.5e-39	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20700
fragaria_vesca	FvH4_3g38900
malus_domestica	MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica	Prupe.3G137300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0070141
rosa_laevigata	RLG00000036115
rosa_multiflora	Rmu_sc0002109.1_g000010
rosa_roxburghii	Rroxscaffold_1G00010980
rosa_rugosa	Rorug05G0403000
rosa_samantha	Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana	Rw5G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccII	CGCG	1 cut(s)	443
AciI	CCGC	4 cut(s)	216, 390, 396, 443
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	98
AcvI	CACGTG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	107, 294
AluI	AGCT	2 cut(s)	107, 294
Alw21I	GWGCWC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	3 cut(s)	167, 401, 443
BmuI	ACTGGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	216, 390, 396, 443
BspFNI	CGCG	1 cut(s)	443
BspMI	ACCTGC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	20, 311
Bst6I	CTCTTC	2 cut(s)	36, 114
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	443
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	2 cut(s)	107, 294
CviKI_1	RGCY	2 cut(s)	107, 294
Eam1104I	CTCTTC	2 cut(s)	36, 114
EarI	CTCTTC	2 cut(s)	36, 114
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	1 cut(s)	343
FaiI	YATR	4 cut(s)	70, 72, 167, 341
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	1 cut(s)	339
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	2 cut(s)	327, 407
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	117, 406
Hpy188III	TCNNGA	2 cut(s)	365, 489
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	229, 353, 466
HpyCH4III	ACNGT	2 cut(s)	20, 311
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	132, 180, 245, 372, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	39, 142, 210, 309, 336, 398
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	3 cut(s)	167, 401, 443
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	86, 379
MboII	GAAGA	5 cut(s)	23, 26, 101, 104, 149
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	77, 190
MnlI	CCTC	7 cut(s)	56, 59, 289, 330, 343, 433, 470
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	86, 379
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	327, 407
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	419
PscI	ACATGT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	322
PspCI	CACGTG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	109, 131, 296, 306, 364, 421, 458
SfaNI	GCATC	3 cut(s)	167, 401, 443
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	77, 190
SsiI	CCGC	4 cut(s)	216, 390, 396, 443
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	20, 311
TaiI	ACGT	1 cut(s)	421
TasI	AATT	2 cut(s)	77, 190
TfiI	GAWTC	2 cut(s)	327, 407
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	86, 379
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	86, 379
TspDTI	ATGAA	2 cut(s)	57, 90
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.