Rorug05G0403000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015837
Physical Location & Seq
Reverse (-)
55405038 .. 55406188
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0403000.1

Sequence Viewer

Length: 513 bp
ATGAAGGAAAAACTCTATGCATTGCGGTCCTTAGTTCCTAACATCACTAAGATGGATAAGGCGTCCATTATTGGAGATGCTGTCTTGTATGTGCAAGACCTGGAAAAGCAGGCTAAGAAGCTGAAAGCTGAGATTTCGGGACTTGAAGTATCCTTAGAAGGATCAACCCAAAATCCAACCAAGAATAAATTAGTTGCGGACAATTACCATTTAATTCCCAAGGAAACCATTCAGATAGATGTGTCTCAAGTAAAGGAGAAAGGCTTTTATGTGAAAGTGGGATGCAACAGAGGAGTAGGGGTGGCCACAGCACTTTACAAGGCCATAGAATCCCTTACAAGCTTCACTGTTCAGAGTTCAAACTTGAACATGGTTAATTCCAAGAGATTCGAAATAACACTCGCTTTGAACGTAAAAGAGTGCGAGCACGAGATCATGAACTTACCAAATTTGAAACTTTGGGTGACTGGGGCTTTTCTGAACCAGGGTTTTGAATTAGCCACAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.87

Weight (kDa)

8.77

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 197
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 62
AgsI TTSAA 6 cut(s) 146, 360, 367, 409, 454, 494
AjnI CCWGG 2 cut(s) 99, 483
AluBI AGCT 3 cut(s) 121, 128, 342
AluI AGCT 3 cut(s) 121, 128, 342
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 303, 321
ApoI RAATTY 1 cut(s) 448
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 390
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 305
BauI CACGAG 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 429
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 101, 485
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 249
BfuI GTATCC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 101, 485
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 101, 485
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 67, 272
BmuI ACTGGG 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 219, 484
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 285, 315
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 101, 485
BseDI CCNNGG 2 cut(s) 219, 484
BseGI GGATG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 306
BshFI GGCC 2 cut(s) 305, 323
BsiHKAI GWGCWC 1 cut(s) 429
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 305, 323
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 2 cut(s) 161, 432
BspACI CCGC 2 cut(s) 25, 197
BspANI GGCC 2 cut(s) 305, 323
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 435
BspPI GGATC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 219, 484
BssMI GATC 2 cut(s) 161, 432
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 101, 485
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 111, 425
BstDEI CTNAG 5 cut(s) 31, 48, 114, 129, 154
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 2 cut(s) 164, 435
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 161, 432
BstNI CCWGG 2 cut(s) 101, 485
BstSCI CCNGG 2 cut(s) 99, 483
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 305, 323
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 111, 425
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 51
CviAII CATG 2 cut(s) 370, 436
DdeI CTNAG 5 cut(s) 31, 48, 114, 129, 154
DpnI GATC 2 cut(s) 163, 434
DpnII GATC 2 cut(s) 161, 432
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 99, 483
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 373, 439
FaiI YATR 6 cut(s) 18, 90, 270, 326, 371, 437
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 369, 435
FokI GGATG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 305, 323
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 373, 439
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 2 cut(s) 329, 387
HphI GGTGA 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 234, 354, 480
Hpy188III TCNNGA 2 cut(s) 138, 436
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 20, 94, 285
HpyF3I CTNAG 5 cut(s) 31, 48, 114, 129, 154
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 373, 439
Kzo9I GATC 2 cut(s) 161, 432
LpnPI CCDG 7 cut(s) 86, 95, 113, 453, 470, 489, 497
LweI GCATC 2 cut(s) 67, 272
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 463
MalI GATC 2 cut(s) 163, 434
MboI GATC 2 cut(s) 161, 432
MhlI GDGCHC 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 6 cut(s) 188, 202, 213, 376, 448, 494
MluNI TGGCCA 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 1 cut(s) 284
Mox20I TGGCCA 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 228
MscI TGGCCA 1 cut(s) 305
MseI TTAA 2 cut(s) 212, 375
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 101, 485
MvaI CCWGG 2 cut(s) 101, 485
NdeII GATC 2 cut(s) 161, 432
NlaIII CATG 2 cut(s) 373, 439
NmuCI GTSAC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 22
NspV TTCGAA 1 cut(s) 390
PagI TCATGA 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 329, 387
Psp6I CCWGG 2 cut(s) 99, 483
PspGI CCWGG 2 cut(s) 99, 483
PspPI GGNCC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 212, 375
Sau3AI GATC 2 cut(s) 161, 432
Sau96I GGNCC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 101, 485
SduI GDGCHC 1 cut(s) 429
SetI ASST 5 cut(s) 102, 123, 130, 344, 414
SfaNI GCATC 2 cut(s) 67, 272
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 6 cut(s) 188, 202, 213, 376, 448, 494
SsiI CCGC 2 cut(s) 25, 197
StyD4I CCNGG 2 cut(s) 99, 483
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 390
TasI AATT 6 cut(s) 188, 202, 213, 376, 448, 494
TfiI GAWTC 2 cut(s) 329, 387
Tru1I TTAA 2 cut(s) 212, 375
Tru9I TTAA 2 cut(s) 212, 375
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 17, 452
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.