MD17G1240900.v1.1

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015837
Physical Location & Seq
Reverse (-)
29006527 .. 29007951
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1240900.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGCTTCGTTATCTCATCCCGTTTTCTTCCTCTTCTTCTTCCTTGTATTGGGTTTTGCCTCCTCCGCCACCTTCATCTCTTATGATATCTTACAGGCTGGTGGATCATCCACGGGGGGACGTGCCCTTCTTCAGGCCAAAAAAAATTGTCCTGTGAATTTTGAGAACCAGAACTACACAATCATAACAAGCAAGTGCAAAGGACCAAACTACCCAGCAAAGAGCTGCTGTGATGCCTTGAAGGATTTTGCCTGTCCTTTTACAGAAGAAATCAATGACTTGAAAAATGATTGTGCTTCAACCATGTTCAGCTACATAAACATCTACGGGAAGTATCCTCCCGGTCTGTTTGCATCTCAATGCCGCGAAGGGAAAGAAGGTCTCGCATGTCCCGCTGAGGCCCCGAAATCTGATCAGAAGAGCAGCAGAGGTCACATATCAGCTACTCACTCCATCATGCTAGCACTATCTGCTTCCTTCCTTGTATTATCCTTCCATATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.27

Weight (kDa)

8.1

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 52 - 128 1.9e-40 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 366
AciI CCGC 3 cut(s) 66, 364, 393
AclWI GGATC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 49, 133
AgsI TTSAA 3 cut(s) 241, 283, 300
AjiI CACGTC 1 cut(s) 122
AluBI AGCT 3 cut(s) 225, 312, 443
AluI AGCT 3 cut(s) 225, 312, 443
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 112
AoxI GGCC 2 cut(s) 135, 399
ApeKI GCWGC 2 cut(s) 225, 423
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 203, 400
AsuC2I CCSGG 1 cut(s) 342
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 212, 435
BccI CCATC 1 cut(s) 461
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 3 cut(s) 226, 364, 424
BlsI GCNGC 3 cut(s) 227, 365, 425
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 203, 400
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 223, 362
BmtI GCTAGC 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 133
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 16, 107
BseLI CCNNNNNNNGG 2 cut(s) 49, 133
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 2 cut(s) 212, 435
BseYI CCCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 2 cut(s) 137, 401
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 132, 375
BslI CCNNNNNNNGG 2 cut(s) 49, 133
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 132, 375
BsnI GGCC 2 cut(s) 137, 401
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 104, 412
BspACI CCGC 3 cut(s) 66, 364, 393
BspANI GGCC 2 cut(s) 137, 401
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 104, 412
Bst6I CTCTTC 2 cut(s) 38, 413
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 16, 107
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 2 cut(s) 107, 415
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 2 cut(s) 104, 412
BstMWI GCNNNNNNNGC 3 cut(s) 65, 392, 470
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 212, 435
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 137, 401
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 16, 107
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 203, 400
CviAII CATG 3 cut(s) 304, 387, 457
CviJI RGCY 7 cut(s) 5, 98, 137, 225, 312, 401, 443
CviKI_1 RGCY 7 cut(s) 5, 98, 137, 225, 312, 401, 443
DdeI CTNAG 1 cut(s) 396
DpnI GATC 2 cut(s) 106, 414
DpnII GATC 2 cut(s) 104, 412
Eam1104I CTCTTC 2 cut(s) 38, 413
EarI CTCTTC 2 cut(s) 38, 413
EciI GGCGGA 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 400
EcoRV GATATC 1 cut(s) 88
FaeI CATG 3 cut(s) 307, 390, 460
FaiI YATR 9 cut(s) 84, 185, 305, 317, 388, 437, 458, 498, 500
FaqI GGGAC 2 cut(s) 132, 375
FatI CATG 3 cut(s) 303, 386, 456
FauI CCCGC 1 cut(s) 400
FauNDI CATATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 226, 364, 424
FokI GGATG 2 cut(s) 3, 94
Fsp4HI GCNGC 3 cut(s) 226, 364, 424
FspBI CTAG 1 cut(s) 461
GluI GCNGC 3 cut(s) 226, 364, 424
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 2 cut(s) 137, 401
HapII CCGG 1 cut(s) 342
Hin1II CATG 3 cut(s) 307, 390, 460
HpaII CCGG 1 cut(s) 342
Hpy188I TCNGA 3 cut(s) 412, 417, 506
HpyAV CCTTC 7 cut(s) 82, 137, 235, 362, 371, 487, 502
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 198, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 392, 470
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 307, 390, 460
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 2 cut(s) 104, 412
LguI GCTCTTC 1 cut(s) 413
LpnPI CCDG 8 cut(s) 80, 84, 119, 165, 182, 228, 265, 355
Lsp1109I GCAGC 2 cut(s) 212, 435
LweI GCATC 2 cut(s) 223, 362
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 431
MalI GATC 2 cut(s) 106, 414
MboI GATC 2 cut(s) 104, 412
MboII GAAGA 7 cut(s) 19, 25, 28, 31, 122, 278, 430
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 145, 157
MnlI CCTC 6 cut(s) 41, 70, 73, 348, 391, 422
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 65, 392, 470
NciI CCSGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 498
NdeII GATC 2 cut(s) 104, 412
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 3 cut(s) 307, 390, 460
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 227, 365, 425
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 203, 400
PsrI GAACNNNNNNTAC 2 cut(s) 158, 190
RseI CAYNNNNRTG 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 413
SatI GCNGC 3 cut(s) 226, 364, 424
Sau3AI GATC 2 cut(s) 104, 412
Sau96I GGNCC 2 cut(s) 203, 400
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 127
SetI ASST 7 cut(s) 74, 124, 227, 314, 382, 433, 445
SfaNI GCATC 2 cut(s) 223, 362
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 358
Sse9I AATT 2 cut(s) 145, 157
SsiI CCGC 3 cut(s) 66, 364, 393
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 340
TaiI ACGT 1 cut(s) 124
TasI AATT 2 cut(s) 145, 157
TauI GCSGC 1 cut(s) 366
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 225, 423
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 390
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.