Rroxscaffold_1G00010980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015837
Physical Location & Seq
Forward (+)
14015179 .. 14016609
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010980.1

Sequence Viewer

Length: 420 bp
ATGATATATTTGAGCCTCCTCGTGTATCCTTTGGACGTTCCCTTCTTCAAACCAAAAAAAGATTGCCCTGTGAACTTTGAGAACCAGAACTACACAATCCTTACAAGCACGTGCAAGGGACCAAATTACCCACCCAAAATCTGTTGTGAAGCTTTGAAGAAATTTGCCTGCCCTTTTGCAGATAAGATTAGTGACGAAAAAACTGATTGCGCTACGACAATGTTTAGCTACATAAACATCTATGGGAAATACCCTCCTGGCCTGTTTGCATCTCAATGTCGAGAAGATAATAAAATTGGTCTTAAATGTGCTGATGCTGAGCCACCAAAACCCAGCGCAGCTTCCACGGTGATGGCCGCATCAGCTACTCACTTAGCACTCACCGCTGCCTTCCTATTATTATCTTTACATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

8.08

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 24 - 98 8.3e-37 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 357, 384
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 161
AcvI CACGTG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 49, 157
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 152, 228, 341, 365
AluI AGCT 4 cut(s) 152, 228, 341, 365
AoxI GGCC 2 cut(s) 259, 354
ApeKI GCWGC 2 cut(s) 338, 386
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 2 cut(s) 212, 338
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 361, 373
AvaII GGWCC 1 cut(s) 119
BauI CACGAG 1 cut(s) 20
BbrPI CACGTG 1 cut(s) 111
BbvI GCAGC 2 cut(s) 350, 373
BccI CCATC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 3 cut(s) 339, 357, 387
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 3 cut(s) 340, 358, 388
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 278, 304, 368
Bpu1102I GCTNAGC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 350, 373
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 2 cut(s) 261, 356
BslFI GGGAC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 2 cut(s) 261, 356
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 2 cut(s) 357, 384
BspANI GGCC 2 cut(s) 261, 356
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 345
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 318, 373
BstDSI CCRYGG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 212, 338
BstMWI GCNNNNNNNGC 2 cut(s) 362, 383
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 350, 373
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 261, 356
BtgI CCRYGG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 2 cut(s) 212, 338
Cfr13I GGNCC 1 cut(s) 119
CviJI RGCY 8 cut(s) 15, 152, 228, 261, 322, 341, 356, 365
CviKI_1 RGCY 8 cut(s) 15, 152, 228, 261, 322, 341, 356, 365
DdeI CTNAG 2 cut(s) 318, 373
EaeI YGGCCR 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 119
Eco72I CACGTG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 256
FaiI YATR 3 cut(s) 7, 233, 243
FaqI GGGAC 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 339, 357, 387
Fsp4HI GCNGC 3 cut(s) 339, 357, 387
GlaI GCGC 2 cut(s) 211, 337
GluI GCNGC 3 cut(s) 339, 357, 387
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 2 cut(s) 261, 356
HhaI GCGC 2 cut(s) 212, 338
Hin6I GCGC 2 cut(s) 210, 336
HinP1I GCGC 2 cut(s) 210, 336
HindIII AAGCTT 1 cut(s) 150
HphI GGTGA 2 cut(s) 361, 373
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 52, 400
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 36, 110
HpyCH4V TGCA 3 cut(s) 114, 179, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 383
HpyF3I CTNAG 2 cut(s) 318, 373
HpySE526I ACGT 2 cut(s) 36, 110
HspAI GCGC 2 cut(s) 210, 336
LpnPI CCDG 7 cut(s) 81, 98, 181, 243, 270, 275, 346
Lsp1109I GCAGC 2 cut(s) 350, 373
LweI GCATC 3 cut(s) 278, 304, 368
MaeII ACGT 2 cut(s) 36, 110
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 3 cut(s) 37, 169, 296
MluCI AATT 3 cut(s) 124, 161, 294
MnlI CCTC 3 cut(s) 26, 29, 264
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 274, 350
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 362, 383
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 340, 358, 388
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 256
PspCI CACGTG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 119
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
RseI CAYNNNNRTG 2 cut(s) 274, 350
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 339, 357, 387
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 258
SetI ASST 6 cut(s) 39, 113, 154, 230, 343, 367
SfaNI GCATC 3 cut(s) 278, 304, 368
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 274, 350
Sse9I AATT 3 cut(s) 124, 161, 294
SsiI CCGC 2 cut(s) 357, 384
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 39, 113
TaqI TCGA 1 cut(s) 280
TasI AATT 3 cut(s) 124, 161, 294
TauI GCSGC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 338, 386
Tsp45I GTSAC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.