Rh5DG489700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015837
Physical Location & Seq
Reverse (-)
76942087 .. 76943150
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG489700.1

Sequence Viewer

Length: 525 bp
ATGACTACTTGTTCATATCGATCATCATGTCATTGTCTCATTTTCTTCTTCTTCCTAATCCTCTTGGGCTTGGCTTCAACCTCCTCCTCCGCCACCTTCATTTCCTATGATATATTTGAGCCTCCTCGTGGATCCTTTGGACGTTCCCTTCTTCAAACCAAAAAAAATTGCCCTGTGAACTTTGAGAATCAGAACTACACAATCCTTACAAGCACGTGCAAGGGACCAAATTACCCACCCAAAATCTGTTGTGAAGCTTTCAAGAAATTTGCCTGCCCTTTTGCAGATCAGATTAGTGACGAAAAAAGTGATTGCGCTGCAACCATGTTTAGCTACATAAACATCTACGGGAAATACCCTCCTGGCCTGTTTTCATCTCAATGTCGTGAAGATAATAAAATTGGTCTTAAATGTGCTGATGCTGAGCCACCAAAACCCAGCGCAGCTTCCACGGTGATGGCCGCATCAGCTACTCACTTAGCACTGACCGCTGCCTTCCTATTATTATCTTTACATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.13

Weight (kDa)

8.27

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 59 - 133 1.1e-36 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 90, 462, 489
AclWI GGATC 2 cut(s) 126, 139
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 266
AcvI CACGTG 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 78, 155, 262
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 4 cut(s) 257, 333, 446, 470
AluI AGCT 4 cut(s) 257, 333, 446, 470
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 126, 139
AoxI GGCC 2 cut(s) 364, 459
ApeKI GCWGC 3 cut(s) 317, 443, 491
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 2 cut(s) 317, 443
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 466
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 126
BbrPI CACGTG 1 cut(s) 216
BbvI GCAGC 3 cut(s) 304, 455, 478
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 41
BisI GCNGC 4 cut(s) 318, 444, 462, 492
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 4 cut(s) 319, 445, 463, 493
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 133, 225
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 409, 473
Bpu1102I GCTNAGC 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 414
BseRI GAGGAG 3 cut(s) 73, 76, 114
BseXI GCAGC 3 cut(s) 304, 455, 478
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 2 cut(s) 366, 461
BshVI ATCGAT 1 cut(s) 19
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 366, 461
Bsp143I GATC 3 cut(s) 20, 131, 286
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 3 cut(s) 90, 462, 489
BspANI GGCC 2 cut(s) 366, 461
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 133, 225
BspPI GGATC 2 cut(s) 126, 139
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 3 cut(s) 20, 131, 286
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 423, 478
BstDSI CCRYGG 1 cut(s) 450
BstHHI GCGC 2 cut(s) 317, 443
BstKTI GATC 3 cut(s) 23, 134, 289
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 20, 131, 286
BstMWI GCNNNNNNNGC 2 cut(s) 467, 488
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 3 cut(s) 304, 455, 478
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 2 cut(s) 366, 461
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 2 cut(s) 317, 443
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 19
CviAII CATG 2 cut(s) 27, 325
DdeI CTNAG 2 cut(s) 423, 478
DpnI GATC 3 cut(s) 22, 133, 288
DpnII GATC 3 cut(s) 20, 131, 286
EaeI YGGCCR 1 cut(s) 459
EciI GGCGGA 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 30, 328
FaiI YATR 6 cut(s) 16, 28, 108, 113, 326, 338
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 26, 324
Fnu4HI GCNGC 4 cut(s) 318, 444, 462, 492
Fsp4HI GCNGC 4 cut(s) 318, 444, 462, 492
GlaI GCGC 2 cut(s) 316, 442
GluI GCNGC 4 cut(s) 318, 444, 462, 492
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 2 cut(s) 366, 461
HhaI GCGC 2 cut(s) 317, 443
Hin1II CATG 2 cut(s) 30, 328
Hin6I GCGC 2 cut(s) 315, 441
HinP1I GCGC 2 cut(s) 315, 441
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 192, 291
Hpy188III TCNNGA 2 cut(s) 262, 386
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 106, 158, 505
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 2 cut(s) 142, 215
HpyCH4V TGCA 3 cut(s) 219, 284, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 488
HpyF3I CTNAG 2 cut(s) 423, 478
HpySE526I ACGT 2 cut(s) 142, 215
Hsp92II CATG 2 cut(s) 30, 328
HspAI GCGC 2 cut(s) 315, 441
Kzo9I GATC 3 cut(s) 20, 131, 286
LpnPI CCDG 6 cut(s) 186, 286, 348, 375, 380, 451
Lsp1109I GCAGC 3 cut(s) 304, 455, 478
LweI GCATC 2 cut(s) 409, 473
MaeII ACGT 2 cut(s) 142, 215
MaeIII GTNAC 1 cut(s) 296
MalI GATC 3 cut(s) 22, 133, 288
MboI GATC 3 cut(s) 20, 131, 286
MboII GAAGA 5 cut(s) 37, 40, 43, 143, 401
MflI RGATCY 1 cut(s) 131
MluCI AATT 4 cut(s) 166, 229, 266, 399
MnlI CCTC 7 cut(s) 71, 91, 94, 97, 132, 135, 369
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 2 cut(s) 379, 455
MspA1I CMGCKG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 467, 488
NdeII GATC 3 cut(s) 20, 131, 286
NlaIII CATG 2 cut(s) 30, 328
NlaIV GGNNCC 2 cut(s) 133, 225
NmuCI GTSAC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 4 cut(s) 319, 445, 463, 493
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 361
PspCI CACGTG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 133, 225
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 131
RseI CAYNNNNRTG 2 cut(s) 379, 455
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 4 cut(s) 318, 444, 462, 492
Sau3AI GATC 3 cut(s) 20, 131, 286
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 363
SetI ASST 8 cut(s) 83, 98, 145, 218, 259, 335, 448, 472
SfaNI GCATC 2 cut(s) 409, 473
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 379, 455
Sse9I AATT 4 cut(s) 166, 229, 266, 399
SsiI CCGC 3 cut(s) 90, 462, 489
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 2 cut(s) 145, 218
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 166, 229, 266, 399
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 317, 443, 491
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 88, 363
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.