FvH4_3g38900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015837
Physical Location & Seq
Reverse (-)
33173734 .. 33175472
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38900.t1

Sequence Viewer

Length: 522 bp
ATGACTACATGTTCATATCGATCATCATGTCATTATCTCATCTTCTTCATGATTCTCCTGGGCTTGGCTTCAACCTCCTCCTCCGCCACCTTCCTTTCCAATCATATATTTGATCCTCCTCGTGGACCCTTTGGACGTTCCCTTCTTCAAACCCAAAAAAGTTGCCCTGTGAACTTTGAGAATCAGAACTACACAGTCCTTACAAGCAAGTGCAAGGGACCAAATTACCCACCCAAGATCTGTTGTGATGCCTTAAAGGAATTTGCCTGCCCTTTTGCAGAGCAGGTCAGTGACGAAAAAAGTGATTGCGCTGCAACCATGTTTAGCTACATAAACATCTATGGGAAATACCCTCCTGGCCTTTTTGCATCTCAATGTCACGAAGATAATAAAGTTGGCCTTAAATGTGCTGATGCTGAGCCACCAAAACCCAGCAATAGAGCTTCCCCGGCAATGGCTGCACCAGCTACTCTCGTAGCAGTGGCTGCTGCCTTGCTATTATTATGTTTACATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.85

Weight (kDa)

7.99

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 57 - 131 3.2e-36 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 260
AfiI CCNNNNNNNGG 3 cut(s) 64, 122, 454
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 72, 149
AjnI CCWGG 2 cut(s) 57, 355
AluBI AGCT 3 cut(s) 327, 443, 467
AluI AGCT 3 cut(s) 327, 443, 467
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 358, 397
ApeKI GCWGC 4 cut(s) 311, 458, 485, 488
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 125, 218
AsuC2I CCSGG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 125, 218
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 4 cut(s) 298, 445, 472, 475
BciT130I CCWGG 2 cut(s) 59, 357
BcnI CCSGG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 274
BglII AGATCT 1 cut(s) 237
BisI GCNGC 4 cut(s) 312, 459, 486, 489
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 4 cut(s) 313, 460, 487, 490
Bme1390I CCNGG 3 cut(s) 59, 357, 449
Bme18I GGWCC 2 cut(s) 125, 218
BmgT120I GGNCC 2 cut(s) 125, 218
BmiI GGNNCC 2 cut(s) 127, 219
BmrFI CCNGG 3 cut(s) 59, 357, 449
BmsI GCATC 3 cut(s) 238, 377, 403
Bpu1102I GCTNAGC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 449
Bsa29I ATCGAT 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 58, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 122, 454
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 2 cut(s) 59, 357
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 58, 447
BseLI CCNNNNNNNGG 3 cut(s) 64, 122, 454
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 3 cut(s) 67, 70, 108
BseXI GCAGC 4 cut(s) 298, 445, 472, 475
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 2 cut(s) 360, 399
BshVI ATCGAT 1 cut(s) 19
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 64, 122, 454
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 2 cut(s) 360, 399
Bsp143I GATC 3 cut(s) 20, 112, 237
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 360, 399
BspCNI CTCAG 1 cut(s) 409
BspDI ATCGAT 1 cut(s) 19
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 127, 219
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 58, 447
BssMI GATC 3 cut(s) 20, 112, 237
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 59, 357
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 2 cut(s) 458, 485
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 417
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 3 cut(s) 23, 115, 240
BstMBI GATC 3 cut(s) 20, 112, 237
BstMWI GCNNNNNNNGC 4 cut(s) 449, 458, 464, 485
BstNI CCWGG 2 cut(s) 59, 357
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 57, 355, 447
BstV1I GCAGC 4 cut(s) 298, 445, 472, 475
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 2 cut(s) 360, 399
BsuTUI ATCGAT 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 295, 486
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 125, 218
ClaI ATCGAT 1 cut(s) 19
CviAII CATG 4 cut(s) 9, 27, 49, 319
DdeI CTNAG 1 cut(s) 417
DpnI GATC 3 cut(s) 22, 114, 239
DpnII GATC 3 cut(s) 20, 112, 237
EciI GGCGGA 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 125, 218
EcoRII CCWGG 2 cut(s) 57, 355
FaeI CATG 4 cut(s) 12, 30, 52, 322
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 231
FatI CATG 4 cut(s) 8, 26, 48, 318
Fnu4HI GCNGC 4 cut(s) 312, 459, 486, 489
Fsp4HI GCNGC 4 cut(s) 312, 459, 486, 489
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 312, 459, 486, 489
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 2 cut(s) 360, 399
HapII CCGG 1 cut(s) 449
HhaI GCGC 1 cut(s) 311
Hin1II CATG 4 cut(s) 12, 30, 52, 322
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 2 cut(s) 52, 181
HpaII CCGG 1 cut(s) 449
Hpy166II GTNNAC 3 cut(s) 125, 172, 509
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 49, 380
Hpy8I GTNNAC 3 cut(s) 125, 172, 509
HpyAV CCTTC 2 cut(s) 100, 152
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 5 cut(s) 213, 278, 314, 368, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 458, 464, 485
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 4 cut(s) 12, 30, 52, 322
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 20, 112, 237
Lsp1109I GCAGC 4 cut(s) 298, 445, 472, 475
LweI GCATC 3 cut(s) 238, 377, 403
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 290, 377
MalI GATC 3 cut(s) 22, 114, 239
MboI GATC 3 cut(s) 20, 112, 237
MboII GAAGA 4 cut(s) 34, 37, 137, 395
MflI RGATCY 1 cut(s) 237
MluCI AATT 2 cut(s) 223, 260
MnlI CCTC 6 cut(s) 85, 88, 91, 126, 129, 363
MseI TTAA 2 cut(s) 254, 402
MslI CAYNNNNRTG 1 cut(s) 373
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 3 cut(s) 59, 357, 449
MvaI CCWGG 2 cut(s) 59, 357
MwoI GCNNNNNNNGC 4 cut(s) 449, 458, 464, 485
NciI CCSGG 1 cut(s) 449
NdeII GATC 3 cut(s) 20, 112, 237
NlaIII CATG 4 cut(s) 12, 30, 52, 322
NlaIV GGNNCC 2 cut(s) 127, 219
NmuCI GTSAC 2 cut(s) 290, 377
NspI RCATGY 1 cut(s) 12
PagI TCATGA 1 cut(s) 48
PciI ACATGT 1 cut(s) 8
PfeI GAWTC 2 cut(s) 52, 181
PkrI GCNGC 4 cut(s) 313, 460, 487, 490
PscI ACATGT 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 57, 355
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 57, 355
PspN4I GGNNCC 2 cut(s) 127, 219
PspPI GGNCC 2 cut(s) 125, 218
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 254, 402
SatI GCNGC 4 cut(s) 312, 459, 486, 489
Sau3AI GATC 3 cut(s) 20, 112, 237
Sau96I GGNCC 2 cut(s) 125, 218
ScrFI CCNGG 3 cut(s) 59, 357, 449
SetI ASST 7 cut(s) 77, 92, 139, 288, 329, 445, 469
SfaNI GCATC 3 cut(s) 238, 377, 403
SinI GGWCC 2 cut(s) 125, 218
SmiMI CAYNNNNRTG 1 cut(s) 373
Sse9I AATT 2 cut(s) 223, 260
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 57, 355, 447
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 19
TasI AATT 2 cut(s) 223, 260
TfiI GAWTC 2 cut(s) 52, 181
Tru1I TTAA 2 cut(s) 254, 402
Tru9I TTAA 2 cut(s) 254, 402
TscAI CASTG 2 cut(s) 295, 486
TseFI GTSAC 2 cut(s) 290, 377
TseI GCWGC 4 cut(s) 311, 458, 485, 488
Tsp45I GTSAC 2 cut(s) 290, 377
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 2 cut(s) 295, 486
VpaK11BI GGWCC 2 cut(s) 125, 218
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.