AT2G20870

cell wall

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016602
Physical Location & Seq
Reverse (-)
8981927 .. 8982712
786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20870.1

Sequence Viewer

Length: 423 bp
ATGGCTTCTTCACTTATCACCTCCGCAGTCATTGTCGTGGTTTTAAGCCTAGTGCTTGGATCTGTAGAGCAAGTGAGTGGACTACGTCACGTTCCCAAGTCCCCTAAGACCACTGATGTCAAACACCCTGACTTTCTTGTAACCATTGAGCCCAAACCAACTATTCTCATTCCCGGTGTTGGAAGGTTCTTGCTTCCTCCCAAATGCAAGAAGCCGTTCTACCCTTACAATCCTGTCACCGGAGCTCCACTTACTGGTGGGGGAATCCCATCATATAATGGTGGACAAGGGGCCGGACCTCACACCCAACTCCCTGGTGGCGATGATACGCTTGTCCCAAACCCCGGATTTGAAGCGCCAACCCCGACCATTGGAGCTGGCACCGGAAGCAACGGCCAAGTTCCACCAGTGCCACTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.26

Weight (kDa)

8.82

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 394
AfiI CCNNNNNNNGG 5 cut(s) 179, 239, 254, 344, 371
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 2 cut(s) 245, 377
AluI AGCT 2 cut(s) 245, 377
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 67
AoxI GGCC 2 cut(s) 291, 394
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 291, 296
AsuC2I CCSGG 2 cut(s) 174, 345
AsuHPI GGTGA 2 cut(s) 10, 229
AvaII GGWCC 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 153, 247
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 199, 409
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 2 cut(s) 174, 345
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 174, 315, 345
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 291, 296
BmiI GGNNCC 2 cut(s) 292, 382
BmrFI CCNGG 3 cut(s) 174, 315, 345
BpuMI CCSGG 2 cut(s) 174, 345
BsaJI CCNNGG 2 cut(s) 313, 343
BsaWI WCCGGW 2 cut(s) 239, 383
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 5 cut(s) 179, 239, 254, 344, 371
Bse1I ACTGG 2 cut(s) 259, 407
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 313, 343
BseLI CCNNNNNNNGG 5 cut(s) 179, 239, 254, 344, 371
BseNI ACTGG 2 cut(s) 259, 407
BshFI GGCC 2 cut(s) 293, 396
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 5 cut(s) 174, 240, 294, 345, 384
BslFI GGGAC 2 cut(s) 85, 320
BslI CCNNNNNNNGG 5 cut(s) 179, 239, 254, 344, 371
BsmFI GGGAC 2 cut(s) 85, 320
BsnI GGCC 2 cut(s) 293, 396
Bsp1286I GDGCHC 2 cut(s) 153, 247
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 293, 396
BspLI GGNNCC 2 cut(s) 292, 382
BspPI GGATC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 259, 407
BssECI CCNNGG 2 cut(s) 313, 343
BssMI GATC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 62
BstMBI GATC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 172, 313, 343
BstSFI CTRYAG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 2 cut(s) 293, 396
BtgZI GCGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 111, 414
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 291, 296
CviJI RGCY 8 cut(s) 5, 48, 151, 214, 245, 293, 377, 396
CviKI_1 RGCY 8 cut(s) 5, 48, 151, 214, 245, 293, 377, 396
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 394
Ecl136II GAGCTC 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 153, 247
Eco47I GGWCC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 153, 247
FaiI YATR 2 cut(s) 274, 276
FaqI GGGAC 2 cut(s) 85, 320
FriOI GRGCYC 2 cut(s) 153, 247
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 2 cut(s) 293, 396
HapII CCGG 5 cut(s) 174, 240, 294, 345, 384
HhaI GCGC 1 cut(s) 358
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 264
HpaII CCGG 5 cut(s) 174, 240, 294, 345, 384
HphI GGTGA 2 cut(s) 10, 229
Hpy166II GTNNAC 2 cut(s) 80, 284
Hpy8I GTNNAC 2 cut(s) 80, 284
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 2 cut(s) 85, 90
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 85, 90
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 3 cut(s) 242, 250, 374
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 85, 90
MaeIII GTNAC 3 cut(s) 86, 139, 235
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 153, 247
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 31, 207, 309
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 5 cut(s) 174, 240, 294, 345, 384
MspR9I CCNGG 3 cut(s) 174, 315, 345
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 387
NciI CCSGG 2 cut(s) 174, 345
NdeII GATC 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 292, 382
NmuCI GTSAC 2 cut(s) 86, 235
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 292, 382
PspPI GGNCC 2 cut(s) 291, 296
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 2 cut(s) 291, 296
ScrFI CCNGG 3 cut(s) 174, 315, 345
SduI GDGCHC 2 cut(s) 153, 247
SetI ASST 7 cut(s) 23, 88, 93, 188, 247, 301, 379
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 172, 313, 343
TaiI ACGT 2 cut(s) 88, 93
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 2 cut(s) 118, 414
TseFI GTSAC 2 cut(s) 86, 235
Tsp45I GTSAC 2 cut(s) 86, 235
TspRI CASTG 2 cut(s) 118, 414
Tth111I GACNNNGTC 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.