Rmu_sc0004020.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
OG0016602
Physical Location & Seq
Forward (+)
60720 .. 61115
396 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004020.1_g000011.1.cds

Sequence Viewer

Length: 396 bp
atggcagcttcaagatcccattcttcactcctgcctctcctgtccatctttgttatccttcttacaataactggccaagcagttgcagggcacgatgtcccgaaaaacaccaacaaagatgagaagaaagagcctgagtttttgtttggccatgatggcagttttctcattccaggcattgggagggtgttgaaaccacacaagttttttccttacacttctccatacactgctccaagcactggtggaagtactggaacaggtgcggctccacgccctggtggaagtactggaacaggtgcctcagcaccaccaggtcgtaactatgttcctggtggggatgatacctttgttccaaaccctggttttgaggttccaaaccctggccacccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.51

Weight (kDa)

8.1

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 5 cut(s) 179, 242, 278, 362, 383
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 9
AcoI YGGCCR 3 cut(s) 73, 148, 385
AfaI GTAC 2 cut(s) 253, 289
AfiI CCNNNNNNNGG 5 cut(s) 179, 242, 278, 362, 383
AgsI TTSAA 2 cut(s) 12, 193
AjnI CCWGG 6 cut(s) 172, 277, 313, 331, 361, 382
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
AlwI GGATC 1 cut(s) 9
AoxI GGCC 3 cut(s) 73, 148, 385
ApeKI GCWGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 93
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BalI TGGCCA 3 cut(s) 75, 150, 387
BanI GGYRCC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 53, 149
BciT130I CCWGG 6 cut(s) 174, 279, 315, 333, 363, 384
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 6, 267
BlsI GCNGC 2 cut(s) 7, 268
BmcAI AGTACT 2 cut(s) 253, 289
Bme1390I CCNGG 6 cut(s) 174, 279, 315, 333, 363, 384
BmiI GGNNCC 3 cut(s) 270, 301, 375
BmrFI CCNGG 6 cut(s) 174, 279, 315, 333, 363, 384
Bpu10I CCTNAGC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 277, 361, 382
Bsc4I CCNNNNNNNGG 5 cut(s) 179, 242, 278, 362, 383
Bse1I ACTGG 4 cut(s) 76, 247, 259, 295
BseBI CCWGG 6 cut(s) 174, 279, 315, 333, 363, 384
BseDI CCNNGG 3 cut(s) 277, 361, 382
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 5 cut(s) 179, 242, 278, 362, 383
BseMII CTCAG 2 cut(s) 126, 318
BseNI ACTGG 4 cut(s) 76, 247, 259, 295
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 75, 150, 387
BshNI GGYRCC 1 cut(s) 299
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 5 cut(s) 179, 242, 278, 362, 383
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 3 cut(s) 75, 150, 387
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 266
BspANI GGCC 3 cut(s) 75, 150, 387
BspCNI CTCAG 2 cut(s) 127, 317
BspLI GGNNCC 3 cut(s) 270, 301, 375
BspPI GGATC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 4 cut(s) 76, 247, 259, 295
BssECI CCNNGG 3 cut(s) 277, 361, 382
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 6 cut(s) 174, 279, 315, 333, 363, 384
BstDEI CTNAG 2 cut(s) 135, 304
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 6 cut(s) 174, 279, 315, 333, 363, 384
BstSCI CCNGG 6 cut(s) 172, 277, 313, 331, 361, 382
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 3 cut(s) 75, 150, 387
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 240
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 2 cut(s) 252, 288
CviAII CATG 1 cut(s) 152
CviJI RGCY 6 cut(s) 8, 75, 133, 150, 269, 387
CviKI_1 RGCY 6 cut(s) 8, 75, 133, 150, 269, 387
CviQI GTAC 2 cut(s) 252, 288
DdeI CTNAG 2 cut(s) 135, 304
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 3 cut(s) 73, 148, 385
EcoRII CCWGG 6 cut(s) 172, 277, 313, 331, 361, 382
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 153, 226, 327
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 6, 267
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 6, 267
GluI GCNGC 2 cut(s) 6, 267
HaeIII GGCC 3 cut(s) 75, 150, 387
Hin1II CATG 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 12, 100
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 135, 304
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 238, 274
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 15, 136
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 3 cut(s) 75, 150, 387
MluNI TGGCCA 3 cut(s) 75, 150, 387
MnlI CCTC 4 cut(s) 45, 177, 313, 364
Mox20I TGGCCA 3 cut(s) 75, 150, 387
MscI TGGCCA 3 cut(s) 75, 150, 387
Msp20I TGGCCA 3 cut(s) 75, 150, 387
MspR9I CCNGG 6 cut(s) 174, 279, 315, 333, 363, 384
MvaI CCWGG 6 cut(s) 174, 279, 315, 333, 363, 384
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 1 cut(s) 14
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 3 cut(s) 270, 301, 375
PflMI CCANNNNNTGG 5 cut(s) 179, 242, 278, 362, 383
PkrI GCNGC 2 cut(s) 7, 268
Psp6I CCWGG 6 cut(s) 172, 277, 313, 331, 361, 382
PspGI CCWGG 6 cut(s) 172, 277, 313, 331, 361, 382
PspN4I GGNNCC 3 cut(s) 270, 301, 375
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 253, 289
RsaNI GTAC 2 cut(s) 252, 288
SatI GCNGC 2 cut(s) 6, 267
Sau3AI GATC 1 cut(s) 14
ScaI AGTACT 2 cut(s) 253, 289
ScrFI CCNGG 6 cut(s) 174, 279, 315, 333, 363, 384
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 10, 265, 301, 319, 350, 375
SexAI ACCWGGT 1 cut(s) 313
SsiI CCGC 1 cut(s) 266
StyD4I CCNGG 6 cut(s) 172, 277, 313, 331, 361, 382
TatI WGTACW 2 cut(s) 251, 287
TauI GCSGC 1 cut(s) 269
TscAI CASTG 2 cut(s) 235, 247
TseI GCWGC 1 cut(s) 5
TspRI CASTG 2 cut(s) 235, 247
Van91I CCANNNNNTGG 5 cut(s) 179, 242, 278, 362, 383
ZrmI AGTACT 2 cut(s) 253, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.