MD17G1079900.v1.1

cell wall

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016602
Physical Location & Seq
Forward (+)
6612349 .. 6612744
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1079900.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGCTTACAAAACCCGCCTTTCGTTCTTTGCTCTCATCTCCGTTTCCGTTATCCTCCTTGACCTAGTAGGAGGAGCAGTTGCCGGGAGAAATGTGCCAACAATCTCCAACAAAGATGAAAAGAAACAACCTCAGTGGTTACTTGACCATGACGGAAGTCTTCTCATTCCTGGCATTGGGCGTGTGATGCTACCACCATTGAAGCATTTTGCTCCGTTCCCTGGCATGGGCGGCACCGGCAGCACTGGTGGAAGTGGAAGTGGTGGAAGCCCGAGTAGTAACAACTATGTTCCAGGCGGTGATGACACATTCGTCCCAAACCCCGGTAATGAGGTTCCAACCCCCGGGAATGGTGGCGGGAGCACTCCGAGCACTCCAGTTACTCCAAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.27

Weight (kDa)

6.71

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 4 cut(s) 16, 231, 297, 357
AfiI CCNNNNNNNGG 7 cut(s) 176, 221, 226, 227, 323, 344, 350
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 3 cut(s) 169, 220, 292
Alw21I GWGCWC 2 cut(s) 365, 374
Ama87I CYCGRG 2 cut(s) 271, 344
ApeKI GCWGC 1 cut(s) 240
AsuC2I CCSGG 4 cut(s) 85, 324, 345, 346
AsuHPI GGTGA 1 cut(s) 311
AvaI CYCGRG 2 cut(s) 271, 344
BanI GGYRCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 365, 374
BbvI GCAGC 1 cut(s) 252
BciT130I CCWGG 3 cut(s) 171, 222, 294
BcnI CCSGG 4 cut(s) 85, 324, 345, 346
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 232, 241
BlsI GCNGC 2 cut(s) 233, 242
Bme1390I CCNGG 7 cut(s) 85, 171, 222, 294, 324, 345, 346
BmeT110I CYCGRG 2 cut(s) 271, 344
BmiI GGNNCC 2 cut(s) 235, 336
BmrFI CCNGG 7 cut(s) 85, 171, 222, 294, 324, 345, 346
BmsI GCATC 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 360
BpuMI CCSGG 4 cut(s) 85, 324, 345, 346
BsaJI CCNNGG 4 cut(s) 220, 322, 343, 344
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 7 cut(s) 176, 221, 226, 227, 323, 344, 350
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 250, 377
BseBI CCWGG 3 cut(s) 171, 222, 294
BseDI CCNNGG 4 cut(s) 220, 322, 343, 344
BseLI CCNNNNNNNGG 7 cut(s) 176, 221, 226, 227, 323, 344, 350
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 250, 377
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 365, 374
BsiHKCI CYCGRG 2 cut(s) 271, 344
BsiSI CCGG 4 cut(s) 84, 237, 324, 345
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 7 cut(s) 176, 221, 226, 227, 323, 344, 350
BsmFI GGGAC 1 cut(s) 299
BsoBI CYCGRG 2 cut(s) 271, 344
Bsp1286I GDGCHC 2 cut(s) 365, 374
BspACI CCGC 4 cut(s) 16, 231, 297, 357
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 235, 336
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 2 cut(s) 250, 377
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 220, 322, 343, 344
Bst2UI CCWGG 3 cut(s) 171, 222, 294
BstDEI CTNAG 1 cut(s) 132
BstMWI GCNNNNNNNGC 5 cut(s) 187, 231, 237, 240, 369
BstNI CCWGG 3 cut(s) 171, 222, 294
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 7 cut(s) 83, 169, 220, 292, 322, 343, 344
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 140, 243
Cfr10I RCCGGY 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 2 cut(s) 149, 226
CviJI RGCY 2 cut(s) 5, 270
CviKI_1 RGCY 2 cut(s) 5, 270
DdeI CTNAG 1 cut(s) 132
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eco88I CYCGRG 2 cut(s) 271, 344
EcoRII CCWGG 3 cut(s) 169, 220, 292
FaeI CATG 2 cut(s) 152, 229
FaiI YATR 3 cut(s) 150, 227, 288
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 148, 225
FauI CCCGC 2 cut(s) 23, 350
Fnu4HI GCNGC 2 cut(s) 232, 241
Fsp4HI GCNGC 2 cut(s) 232, 241
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 232, 241
GsuI CTGGAG 1 cut(s) 360
HapII CCGG 4 cut(s) 84, 237, 324, 345
Hin1II CATG 2 cut(s) 152, 229
HpaII CCGG 4 cut(s) 84, 237, 324, 345
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 231, 237, 240, 369
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 2 cut(s) 152, 229
LmnI GCTCC 3 cut(s) 74, 217, 360
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 138, 278, 379
MboII GAAGA 1 cut(s) 152
MhlI GDGCHC 2 cut(s) 365, 374
MmeI TCCRAC 2 cut(s) 132, 362
MnlI CCTC 4 cut(s) 65, 65, 141, 325
MspI CCGG 4 cut(s) 84, 237, 324, 345
MspR9I CCNGG 7 cut(s) 85, 171, 222, 294, 324, 345, 346
MvaI CCWGG 3 cut(s) 171, 222, 294
MwoI GCNNNNNNNGC 5 cut(s) 187, 231, 237, 240, 369
NciI CCSGG 4 cut(s) 85, 324, 345, 346
NlaIII CATG 2 cut(s) 152, 229
NlaIV GGNNCC 2 cut(s) 235, 336
PkrI GCNGC 2 cut(s) 233, 242
PshAI GACNNNNGTC 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 169, 220, 292
PspGI CCWGG 3 cut(s) 169, 220, 292
PspN4I GGNNCC 2 cut(s) 235, 336
SatI GCNGC 2 cut(s) 232, 241
ScrFI CCNGG 7 cut(s) 85, 171, 222, 294, 324, 345, 346
SduI GDGCHC 2 cut(s) 365, 374
SetI ASST 3 cut(s) 66, 133, 336
SfaNI GCATC 1 cut(s) 177
SmaI CCCGGG 1 cut(s) 346
SsiI CCGC 4 cut(s) 16, 231, 297, 357
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 7 cut(s) 83, 169, 220, 292, 322, 343, 344
TauI GCSGC 1 cut(s) 234
TscAI CASTG 2 cut(s) 140, 250
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 4 cut(s) 31, 37, 168, 204
TspMI CCCGGG 1 cut(s) 344
TspRI CASTG 2 cut(s) 140, 250
XmaI CCCGGG 1 cut(s) 344
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.