Rh2BG575600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016602
Physical Location & Seq
Reverse (-)
79153792 .. 79154184
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG575600.1

Sequence Viewer

Length: 393 bp
ATGGCAGCTTCAAGATCCCATTCACTCCTGCCTCTCCTGTCCATCTTTGTTATCCTTCTTACAATAACTGGCCAAGCAGTTGCAGGGCACCATGTCCCGAAAAACACCAACAAAGATGAGAAGAAAGAGCCTGAGTTTTTGTTTGGCCATGATGGCAGTTTTCTCATTCCAGGCATTGGGAGGGTGTTGAAACCACACAGGTTTTTTCCTTACACTTCTCCATACACTGCTCCACGCACTGGTGGAAGTACTGGAACAGGTGCGGCTCCACGCCCTGGTGGAAGTACTGGAACAGGTGCCTCAGCACCACCAGGTCGTAACTATGTTCCTGGTGGGGATGATACCTTTGTCCCAAACCCTGGTTTTGAGGTTCCAAACCCTGGCCACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.54

Weight (kDa)

9.52

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 87, 296
AccB7I CCANNNNNTGG 5 cut(s) 176, 239, 275, 359, 380
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 9
AcoI YGGCCR 3 cut(s) 70, 145, 382
AfaI GTAC 2 cut(s) 250, 286
AfiI CCNNNNNNNGG 5 cut(s) 176, 239, 275, 359, 380
AgsI TTSAA 2 cut(s) 12, 190
AjnI CCWGG 6 cut(s) 169, 274, 310, 328, 358, 379
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
AlwI GGATC 1 cut(s) 9
AoxI GGCC 3 cut(s) 70, 145, 382
ApeKI GCWGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 90
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BalI TGGCCA 3 cut(s) 72, 147, 384
BanI GGYRCC 2 cut(s) 87, 296
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 50, 146
BciT130I CCWGG 6 cut(s) 171, 276, 312, 330, 360, 381
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 2 cut(s) 6, 264
BlsI GCNGC 2 cut(s) 7, 265
BmcAI AGTACT 2 cut(s) 250, 286
Bme1390I CCNGG 6 cut(s) 171, 276, 312, 330, 360, 381
BmiI GGNNCC 4 cut(s) 89, 267, 298, 372
BmrFI CCNGG 6 cut(s) 171, 276, 312, 330, 360, 381
Bpu10I CCTNAGC 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 274, 358, 379
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 239, 275, 359, 380
Bse1I ACTGG 4 cut(s) 73, 244, 256, 292
BseBI CCWGG 6 cut(s) 171, 276, 312, 330, 360, 381
BseDI CCNNGG 3 cut(s) 274, 358, 379
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 5 cut(s) 176, 239, 275, 359, 380
BseMII CTCAG 2 cut(s) 123, 315
BseNI ACTGG 4 cut(s) 73, 244, 256, 292
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 72, 147, 384
BshNI GGYRCC 2 cut(s) 87, 296
BslFI GGGAC 2 cut(s) 80, 335
BslI CCNNNNNNNGG 5 cut(s) 176, 239, 275, 359, 380
BsmFI GGGAC 2 cut(s) 80, 335
BsnI GGCC 3 cut(s) 72, 147, 384
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 72, 147, 384
BspCNI CTCAG 2 cut(s) 124, 314
BspLI GGNNCC 4 cut(s) 89, 267, 298, 372
BspPI GGATC 1 cut(s) 9
BspT107I GGYRCC 2 cut(s) 87, 296
BsrI ACTGG 4 cut(s) 73, 244, 256, 292
BssECI CCNNGG 3 cut(s) 274, 358, 379
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 6 cut(s) 171, 276, 312, 330, 360, 381
BstDEI CTNAG 2 cut(s) 132, 301
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 6 cut(s) 171, 276, 312, 330, 360, 381
BstSCI CCNGG 6 cut(s) 169, 274, 310, 328, 358, 379
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 3 cut(s) 72, 147, 384
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 237
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 249, 285
CviAII CATG 2 cut(s) 92, 149
CviJI RGCY 6 cut(s) 8, 72, 130, 147, 266, 384
CviKI_1 RGCY 6 cut(s) 8, 72, 130, 147, 266, 384
CviQI GTAC 2 cut(s) 249, 285
DdeI CTNAG 2 cut(s) 132, 301
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 3 cut(s) 70, 145, 382
EcoRII CCWGG 6 cut(s) 169, 274, 310, 328, 358, 379
FaeI CATG 2 cut(s) 95, 152
FaiI YATR 4 cut(s) 93, 150, 223, 324
FaqI GGGAC 2 cut(s) 80, 335
FatI CATG 2 cut(s) 91, 148
Fnu4HI GCNGC 2 cut(s) 6, 264
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 6, 264
GluI GCNGC 2 cut(s) 6, 264
HaeIII GGCC 3 cut(s) 72, 147, 384
Hin1II CATG 2 cut(s) 95, 152
Hpy188III TCNNGA 2 cut(s) 12, 97
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 132, 301
Hsp92II CATG 2 cut(s) 95, 152
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 235, 271
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 3 cut(s) 72, 147, 384
MluNI TGGCCA 3 cut(s) 72, 147, 384
MnlI CCTC 4 cut(s) 42, 174, 310, 361
Mox20I TGGCCA 3 cut(s) 72, 147, 384
MscI TGGCCA 3 cut(s) 72, 147, 384
Msp20I TGGCCA 3 cut(s) 72, 147, 384
MspR9I CCNGG 6 cut(s) 171, 276, 312, 330, 360, 381
MvaI CCWGG 6 cut(s) 171, 276, 312, 330, 360, 381
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 1 cut(s) 14
NlaIII CATG 2 cut(s) 95, 152
NlaIV GGNNCC 4 cut(s) 89, 267, 298, 372
PflMI CCANNNNNTGG 5 cut(s) 176, 239, 275, 359, 380
PkrI GCNGC 2 cut(s) 7, 265
Psp6I CCWGG 6 cut(s) 169, 274, 310, 328, 358, 379
PspGI CCWGG 6 cut(s) 169, 274, 310, 328, 358, 379
PspN4I GGNNCC 4 cut(s) 89, 267, 298, 372
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 250, 286
RsaNI GTAC 2 cut(s) 249, 285
SatI GCNGC 2 cut(s) 6, 264
Sau3AI GATC 1 cut(s) 14
ScaI AGTACT 2 cut(s) 250, 286
ScrFI CCNGG 6 cut(s) 171, 276, 312, 330, 360, 381
SduI GDGCHC 1 cut(s) 90
SetI ASST 7 cut(s) 10, 203, 262, 298, 316, 347, 372
SexAI ACCWGGT 1 cut(s) 310
SsiI CCGC 1 cut(s) 263
StyD4I CCNGG 6 cut(s) 169, 274, 310, 328, 358, 379
TatI WGTACW 2 cut(s) 248, 284
TauI GCSGC 1 cut(s) 266
TscAI CASTG 2 cut(s) 232, 244
TseI GCWGC 1 cut(s) 5
TspRI CASTG 2 cut(s) 232, 244
Van91I CCANNNNNTGG 5 cut(s) 176, 239, 275, 359, 380
ZrmI AGTACT 2 cut(s) 250, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.