Rorug02G0496700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016602
Physical Location & Seq
Reverse (-)
62831559 .. 62834590
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496700.1

Sequence Viewer

Length: 2562 bp
ATGTCGGACGCGCTCAGCAGTCGGCGGCAGCAACAGCTAGTTCTCTCCGAGTCTCTTGATTTAGACTGTGTCATTGTCGACATCCTCTCACGGCTACCGGCCAAATCTCTGCTGCGATTCCGGTGTGTATGCAAAGCATGGCGGGCCTTGATCTCCGATCCTTATTTCATCAGAAAACACCTCAGCTGCATCAACACCAAAATCAGCACCAGCTACTCTCTCCTTATCAAAGATGATATTTTCCGATCCGCAGAGTACGAAGCAATATTGAAGTGTTTGAGCCGTGGTGGTCCTCTTCCGAGCAGAAGGCTTGATTTTCCGGTACTTGATCCATCGTTTGATATTGCTACTATTGGAATCGTTGGTAGTTGCAATGGCTTGATATGTCTAGTACGTGATATTGTTGCTAGAGAATCCTTTACCTTTATGTTATGGAATCCTTGTACTGGAGAATCCCAGGTGCTACCACAACCTCCCCTTCATTCCTCCCAACAATATTTTTTGGGGTTCGGTTATGATTCAACCACTGATGATTACAAAGTAATACTGGGAAGCTATAGATCTGGTCATGAATTTGTTGTTGTCTTTACCCTAAAATCGGGTTCATGGAGGAAGCTTGAAAGGCTCAACAGGTATTTCGAGGTGCATTGGGGAGGGTGTTTAGTTAACGAAGCTCTGCATTGGGTATTGGACGAACTGGAAGACGGTAGGTTAATTGCTTCAAAAATGGTGTCATTTGATCTAGCAGAGGAAAAATTTCATGAGATTCCATTCCCCTTTCCTCCCAATCCGGTAGACAGGCGTGAATTGATTGCCAGAGTTGGAATTCTTAATAATTGCCTAACTCTGTACTTTCAAACCATGGGTCACAGAGTTGGGTGCAATTTTAAGATGTGGGTGCTGAAGGACAATGGAGTCAAGGAATCTTGGACTGAAGTCATAAACATCCCTTCAGAGGTTATGGGTCAAGGTAAAGAGTATACATGCATCTCATGCATTTCTGATAATGGCGAGATTTTGATGCAGCCGGAAGTTGTAGGCCCCTTGGCATTATATAATCCGAGGGAAAAGACATATGGGATTGTCATGGACTATTATGATTACATGCACGAAACTGCTACATATATAGAAACTTTTGTTTCACCATTAACCGGGAGAAAAACTGTAGCAGTTTTAGAACTTTGGCATCAATCTGTTCGATTATGGGGTGAGAATTGGCTGCCTTCACTTCCTTCTAAGTGTCTCCCTGCTCGGCTCCCACCTTCTTCTGCTTTTGTGGCAGACTTCATTGATCGGGATGCTCTCACTTGGAATTTACAATCTGTTCATCCTCCTCTTCATCCTGTGGAACAAGCAGCAATTTTGGCTGTTCCTTTACTGCATCCTGCTCCTCCTGATTGTTTGGTTTGGCCTGCTGAGAAACATGGTGAGTATACAGTTTGTTCTGGATACCACCTATGTCGTTTGACTTCTTCTCCGGTGGTTCATACCCATCCCTATACTTCACATTTTATTAATACTACTATCTGGAATTTTATTTGGTCTATCAATTGCTTTCCAAAAATCAAGCACTTTCTATGGAGGGCTATGCCAGGATCTATTGCAACTAAGGATGCATTATTTCATAGACACATTAGTCGTTCTCCTCTTTGTCCTCTATGCAATTTGGAGAATGAAACCATTGAGCATGTGCTTTTCACTTGTCCTTGGACTCGTTGTGTTTGGTTTGCTCACCCTCTTGGCTATCGTTTTCCATTGGAATCTATCACTTCACTTGCACGTTGGCTTCAATGGTTAAAGTCTTATTTTGTGGATGGGTCTGGTGACAAATCTTTGCTTCACACTCATGTTGCTTTTATTCTTTGGCATATATGGAAAGAACGATGTGTTTGTGTTTTCAATCATACTCCTCCTACTCCGGATTTGGTGGCTTGTAAATCTTTTGATGCTGCTCTTGAATATATTCAACGTCCATTGCCCAGGTGTGTTCGTCTCGTTACACAACCCCTCACTTCTCCATCTTTTTGGACTCCACCACCTCTTGGTACTTTTAAAGTTAACACTGATGCAGCTTGGCATTCAGATTCCCTCTCTTGTGGTATTGCTGTTTTGATTAGAAACTCTTCTGGGGAGCTTGTTGCTGGTTCTAACCAATCTCTCCATGCTTTCTCCGCCGTAGCTGCAGAGGCTTTGGCTGTGTTGGCAGGCCTTACATTGGTTGTTTCTTTAAACTTGTCTCCTATCATCTTGGCATCTGATTCTCTACATGTCATCTCAGCTCTTACTACTGAAAATTTTACTATGGATTGGACGGTGGCTCCCTTGATCTGGAAAATTCGCTCTCTTGCCACTTCCCATTCACATGTTAGCTGGAGTTGGTCCAGCAGACAAGCCAATCTTGCAGCTGATTATATTGCTGCTCTGGCTTCCAGGAGGATGTGTCCATCGGATTGGGTTTCCAATCCTCCTTCCTCCTTTTTAAATTTATTGTTGTCTGATGCTTCTCAGGCTTCTCACATCTCTTCTCAGAACTCTGTTCCTTTTGGTTTTGATGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

853

Amino Acids

96.03

Weight (kDa)

6.61

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 58 3.9e-09 F-box domain
F-box-like PF12937 24 - 59 6.6e-08 F-box-like
FBA_1 PF07734 117 - 319 1.4e-19 F-box associated beta propeller domain
FBA_3 PF08268 120 - 346 9.8e-23 F-box associated beta propeller domain
zf-RVT PF13966 505 - 575 4e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 687 - 808 1.9e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 914, 1635
AccB7I CCANNNNNTGG 1 cut(s) 2042
AccI GTMKAC 4 cut(s) 78, 795, 980, 1433
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 1918
AciI CCGC 4 cut(s) 25, 142, 249, 2172
AclWI GGATC 4 cut(s) 152, 240, 323, 1603
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 8 cut(s) 572, 755, 825, 1312, 1531, 2293, 2334, 2482
AcuI CTGAAG 3 cut(s) 923, 936, 954
AfaI GTAC 6 cut(s) 257, 324, 393, 445, 851, 2047
AfiI CCNNNNNNNGG 7 cut(s) 446, 598, 955, 1151, 2042, 2215, 2328
AflIII ACRYGT 2 cut(s) 2266, 2362
AgsI TTSAA 9 cut(s) 271, 522, 620, 723, 857, 1790, 1900, 1958, 1967
AjnI CCWGG 4 cut(s) 456, 1591, 1979, 2429
Alw26I GTCTC 4 cut(s) 57, 1247, 1997, 2241
AlwI GGATC 4 cut(s) 152, 240, 323, 1603
Aor13HI TCCGGA 1 cut(s) 1918
AoxI GGCC 5 cut(s) 99, 144, 1039, 1409, 2206
ApoI RAATTY 8 cut(s) 572, 755, 825, 1312, 1531, 2293, 2334, 2482
ArsI GACNNNNNNTTYG 4 cut(s) 716, 748, 850, 882
AseI ATTAAT 1 cut(s) 1515
Asp700I GAANNNNTTC 3 cut(s) 756, 1962, 2122
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 144, 290, 1040, 2379
AsuC2I CCSGG 1 cut(s) 1153
AsuHPI GGTGA 5 cut(s) 1134, 1220, 1439, 1724, 1835
AvaII GGWCC 2 cut(s) 290, 2379
BbsI GAAGAC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 182
BccI CCATC 5 cut(s) 340, 1500, 1808, 2026, 2452
BceAI ACGGC 3 cut(s) 107, 267, 2159
BciT130I CCWGG 4 cut(s) 458, 1593, 1981, 2431
BciVI GTATCC 1 cut(s) 1442
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 4 cut(s) 57, 1247, 1997, 2241
BfaI CTAG 4 cut(s) 38, 389, 408, 743
BfmI CTRYAG 3 cut(s) 556, 1164, 2181
BfuI GTATCC 1 cut(s) 1442
BglII AGATCT 1 cut(s) 560
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 5 cut(s) 458, 1153, 1593, 1981, 2431
Bme18I GGWCC 2 cut(s) 290, 2379
BmgT120I GGNCC 4 cut(s) 144, 290, 1040, 2379
BmiI GGNNCC 3 cut(s) 1042, 1256, 2319
BmrFI CCNGG 5 cut(s) 458, 1153, 1593, 1981, 2431
BmrI ACTGGG 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 557
BoxI GACNNNNGTC 1 cut(s) 935
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 468, 2392
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 1153
BsaAI YACGTR 1 cut(s) 395
BsaJI CCNNGG 7 cut(s) 283, 456, 861, 1044, 1061, 1706, 1979
BsaWI WCCGGW 5 cut(s) 120, 319, 790, 1477, 1918
BsaXI ACNNNNNCTCC 6 cut(s) 1459, 1489, 2302, 2332, 2425, 2455
Bsc4I CCNNNNNNNGG 7 cut(s) 446, 598, 955, 1151, 2042, 2215, 2328
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 451, 552, 702
Bse3DI GCAATG 2 cut(s) 379, 1973
BseAI TCCGGA 1 cut(s) 1918
BseBI CCWGG 4 cut(s) 458, 1593, 1981, 2431
BseDI CCNNGG 7 cut(s) 283, 456, 861, 1044, 1061, 1706, 1979
BseLI CCNNNNNNNGG 7 cut(s) 446, 598, 955, 1151, 2042, 2215, 2328
BseMI GCAATG 2 cut(s) 379, 1973
BseMII CTCAG 6 cut(s) 28, 196, 1407, 2289, 2519, 2540
BseNI ACTGG 3 cut(s) 451, 552, 702
BseRI GAGGAG 4 cut(s) 1323, 1380, 1635, 1899
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 5 cut(s) 101, 146, 1041, 1411, 2208
BsiSI CCGG 8 cut(s) 98, 121, 320, 791, 1028, 1152, 1478, 1919
BslI CCNNNNNNNGG 7 cut(s) 446, 598, 955, 1151, 2042, 2215, 2328
BsmAI GTCTC 4 cut(s) 57, 1247, 1997, 2241
BsmBI CGTCTC 1 cut(s) 1997
BsmI GAATGC 1 cut(s) 2077
BsnI GGCC 5 cut(s) 101, 146, 1041, 1411, 2208
Bsp13I TCCGGA 1 cut(s) 1918
Bsp143I GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 4 cut(s) 25, 142, 249, 2172
BspANI GGCC 5 cut(s) 101, 146, 1041, 1411, 2208
BspCNI CTCAG 6 cut(s) 27, 195, 1408, 2288, 2518, 2539
BspEI TCCGGA 1 cut(s) 1918
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 2 cut(s) 568, 760
BspLI GGNNCC 3 cut(s) 1042, 1256, 2319
BspMAI CTGCAG 1 cut(s) 2185
BspPI GGATC 4 cut(s) 152, 240, 323, 1603
BsrDI GCAATG 2 cut(s) 379, 1973
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 3 cut(s) 451, 552, 702
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 7 cut(s) 283, 456, 861, 1044, 1061, 1706, 1979
BssMI GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
BssNAI GTATAC 2 cut(s) 981, 1434
BssT1I CCWWGG 3 cut(s) 861, 1044, 1706
Bst1107I GTATAC 2 cut(s) 981, 1434
Bst2UI CCWGG 4 cut(s) 458, 1593, 1981, 2431
Bst4CI ACNGT 5 cut(s) 68, 707, 1165, 1438, 2314
Bst6I CTCTTC 4 cut(s) 300, 1341, 2128, 2527
BstAPI GCANNNNNTGC 1 cut(s) 993
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 3 cut(s) 144, 1413, 2206
BstDEI CTNAG 8 cut(s) 14, 182, 1236, 1416, 1608, 2275, 2505, 2526
BstDSI CCRYGG 2 cut(s) 283, 861
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 9 cut(s) 153, 160, 248, 331, 563, 742, 1294, 1598, 2328
BstMAI GTCTC 4 cut(s) 57, 1247, 1997, 2241
BstMBI GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
BstNI CCWGG 4 cut(s) 458, 1593, 1981, 2431
BstNSI RCATGY 5 cut(s) 987, 1108, 1691, 2270, 2366
BstPAI GACNNNNGTC 1 cut(s) 935
BstSCI CCNGG 5 cut(s) 456, 1151, 1591, 1979, 2429
BstSFI CTRYAG 3 cut(s) 556, 1164, 2181
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 2 cut(s) 560, 1595
BstXI CCANNNNNNTGG 2 cut(s) 2025, 2451
BstYI RGATCY 2 cut(s) 560, 1595
BstZ17I GTATAC 2 cut(s) 981, 1434
BsuI GTATCC 1 cut(s) 1442
BsuRI GGCC 5 cut(s) 101, 146, 1041, 1411, 2208
BtgI CCRYGG 2 cut(s) 283, 861
BtsIMutI CAGTG 2 cut(s) 525, 2061
Cac8I GCNNGC 3 cut(s) 144, 1413, 2206
CciI TCATGA 2 cut(s) 568, 760
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 4 cut(s) 144, 290, 1040, 2379
CseI GACGC 1 cut(s) 17
Csp6I GTAC 6 cut(s) 256, 323, 392, 444, 850, 2046
CviQI GTAC 6 cut(s) 256, 323, 392, 444, 850, 2046
DdeI CTNAG 8 cut(s) 14, 182, 1236, 1416, 1608, 2275, 2505, 2526
DpnI GATC 9 cut(s) 152, 159, 247, 330, 562, 741, 1293, 1597, 2327
DpnII GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
DraI TTTAAA 3 cut(s) 2053, 2229, 2481
DrdI GACNNNNNNGTC 2 cut(s) 914, 1635
DseDI GACNNNNNNGTC 2 cut(s) 914, 1635
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 4 cut(s) 300, 1341, 2128, 2527
EarI CTCTTC 4 cut(s) 300, 1341, 2128, 2527
EciI GGCGGA 1 cut(s) 2161
Eco130I CCWWGG 3 cut(s) 861, 1044, 1706
Eco147I AGGCCT 1 cut(s) 2208
Eco47I GGWCC 2 cut(s) 290, 2379
Eco57I CTGAAG 3 cut(s) 923, 936, 954
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 4 cut(s) 456, 1591, 1979, 2429
EcoT14I CCWWGG 3 cut(s) 861, 1044, 1706
EcoT22I ATGCAT 3 cut(s) 989, 998, 1618
ErhI CCWWGG 3 cut(s) 861, 1044, 1706
Esp3I CGTCTC 1 cut(s) 1997
FalI AAGNNNNNCTT 2 cut(s) 2382, 2414
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 1075
FblI GTMKAC 4 cut(s) 78, 795, 980, 1433
FspBI CTAG 4 cut(s) 38, 389, 408, 743
GlaI GCGC 1 cut(s) 12
GsuI CTGGAG 2 cut(s) 468, 2392
HaeIII GGCC 5 cut(s) 101, 146, 1041, 1411, 2208
HapII CCGG 8 cut(s) 98, 121, 320, 791, 1028, 1152, 1478, 1919
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 3 cut(s) 79, 667, 2059
HindII GTYRAC 3 cut(s) 79, 667, 2059
HindIII AAGCTT 1 cut(s) 614
HpaI GTTAAC 2 cut(s) 667, 2059
HpaII CCGG 8 cut(s) 98, 121, 320, 791, 1028, 1152, 1478, 1919
HphI GGTGA 5 cut(s) 1134, 1220, 1439, 1724, 1835
Hpy166II GTNNAC 6 cut(s) 79, 667, 796, 981, 1434, 2059
Hpy8I GTNNAC 6 cut(s) 79, 667, 796, 981, 1434, 2059
HpyAV CCTTC 8 cut(s) 300, 488, 898, 960, 1233, 1242, 1272, 2478
HpyCH4III ACNGT 5 cut(s) 68, 707, 1165, 1438, 2314
HpyCH4IV ACGT 3 cut(s) 394, 1780, 1969
HpyF3I CTNAG 8 cut(s) 14, 182, 1236, 1416, 1608, 2275, 2505, 2526
HpySE526I ACGT 3 cut(s) 394, 1780, 1969
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 1918
KspAI GTTAAC 2 cut(s) 667, 2059
Kzo9I GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
LmnI GCTCC 4 cut(s) 1260, 1393, 2131, 2323
MaeI CTAG 4 cut(s) 38, 389, 408, 743
MaeII ACGT 3 cut(s) 394, 1780, 1969
MaeIII GTNAC 3 cut(s) 866, 1823, 1996
MalI GATC 9 cut(s) 152, 159, 247, 330, 562, 741, 1293, 1597, 2327
MboI GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
MboII GAAGA 7 cut(s) 287, 713, 1257, 1328, 1464, 2115, 2514
MfeI CAATTG 1 cut(s) 1549
MflI RGATCY 2 cut(s) 560, 1595
MlyI GAGTC 4 cut(s) 59, 924, 1705, 2023
MmeI TCCRAC 1 cut(s) 802
Mph1103I ATGCAT 3 cut(s) 989, 998, 1618
MroI TCCGGA 1 cut(s) 1918
MroXI GAANNNNTTC 3 cut(s) 756, 1962, 2122
MslI CAYNNNNRTG 2 cut(s) 1845, 2361
MspA1I CMGCKG 2 cut(s) 186, 2405
MspI CCGG 8 cut(s) 98, 121, 320, 791, 1028, 1152, 1478, 1919
MspR9I CCNGG 5 cut(s) 458, 1153, 1593, 1981, 2431
MunI CAATTG 1 cut(s) 1549
Mva1269I GAATGC 1 cut(s) 2077
MvaI CCWGG 4 cut(s) 458, 1593, 1981, 2431
MvnI CGCG 1 cut(s) 11
NciI CCSGG 1 cut(s) 1153
NcoI CCATGG 1 cut(s) 861
NdeI CATATG 1 cut(s) 1075
NdeII GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
NlaIV GGNNCC 3 cut(s) 1042, 1256, 2319
NmeAIII GCCGAG 1 cut(s) 1231
NmuCI GTSAC 2 cut(s) 866, 1823
NsiI ATGCAT 3 cut(s) 989, 998, 1618
NspI RCATGY 5 cut(s) 987, 1108, 1691, 2270, 2366
PagI TCATGA 2 cut(s) 568, 760
PceI AGGCCT 1 cut(s) 2208
PciI ACATGT 2 cut(s) 2266, 2362
PctI GAATGC 1 cut(s) 2077
PdmI GAANNNNTTC 3 cut(s) 756, 1962, 2122
PflFI GACNNNGTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 2042
PfoI TCCNGGA 1 cut(s) 2429
PleI GAGTC 4 cut(s) 58, 923, 1705, 2023
PpsI GAGTC 4 cut(s) 58, 923, 1705, 2023
Ppu21I YACGTR 1 cut(s) 395
PscI ACATGT 2 cut(s) 2266, 2362
PshAI GACNNNNGTC 1 cut(s) 935
PshBI ATTAAT 1 cut(s) 1515
Psp6I CCWGG 4 cut(s) 456, 1591, 1979, 2429
PspGI CCWGG 4 cut(s) 456, 1591, 1979, 2429
PspN4I GGNNCC 3 cut(s) 1042, 1256, 2319
PspPI GGNCC 4 cut(s) 144, 290, 1040, 2379
PstI CTGCAG 1 cut(s) 2185
PsuI RGATCY 2 cut(s) 560, 1595
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 186, 2405
RsaI GTAC 6 cut(s) 257, 324, 393, 445, 851, 2047
RsaNI GTAC 6 cut(s) 256, 323, 392, 444, 850, 2046
RseI CAYNNNNRTG 2 cut(s) 1845, 2361
SalI GTCGAC 1 cut(s) 77
Sau3AI GATC 9 cut(s) 150, 157, 245, 328, 560, 739, 1291, 1595, 2325
Sau96I GGNCC 4 cut(s) 144, 290, 1040, 2379
SchI GAGTC 4 cut(s) 59, 924, 1705, 2023
ScrFI CCNGG 5 cut(s) 458, 1153, 1593, 1981, 2431
SfcI CTRYAG 3 cut(s) 556, 1164, 2181
SinI GGWCC 2 cut(s) 290, 2379
SmiMI CAYNNNNRTG 2 cut(s) 1845, 2361
SseBI AGGCCT 1 cut(s) 2208
SsiI CCGC 4 cut(s) 25, 142, 249, 2172
SspI AATATT 2 cut(s) 267, 497
SspMI CTAG 4 cut(s) 38, 389, 408, 743
StuI AGGCCT 1 cut(s) 2208
StyD4I CCNGG 5 cut(s) 456, 1151, 1591, 1979, 2429
StyI CCWWGG 3 cut(s) 861, 1044, 1706
TaaI ACNGT 5 cut(s) 68, 707, 1165, 1438, 2314
TaiI ACGT 3 cut(s) 397, 1783, 1972
TaqI TCGA 3 cut(s) 78, 639, 1198
TatI WGTACW 2 cut(s) 443, 849
TauI GCSGC 1 cut(s) 28
TscAI CASTG 2 cut(s) 532, 2068
TseFI GTSAC 2 cut(s) 866, 1823
Tsp45I GTSAC 2 cut(s) 866, 1823
TspRI CASTG 2 cut(s) 532, 2068
Tth111I GACNNNGTC 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 2042
VpaK11BI GGWCC 2 cut(s) 290, 2379
VspI ATTAAT 1 cut(s) 1515
XapI RAATTY 8 cut(s) 572, 755, 825, 1312, 1531, 2293, 2334, 2482
XceI RCATGY 5 cut(s) 987, 1108, 1691, 2270, 2366
XmiI GTMKAC 4 cut(s) 78, 795, 980, 1433
XmnI GAANNNNTTC 3 cut(s) 756, 1962, 2122
XspI CTAG 4 cut(s) 38, 389, 408, 743
Zsp2I ATGCAT 3 cut(s) 989, 998, 1618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.