AT4G28160

cell wall

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016602
Physical Location & Seq
Forward (+)
13980316 .. 13981001
686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28160.1

Sequence Viewer

Length: 336 bp
ATGGCTTATACTCTGCAAAATCTGACAGCCACAATTGTTCTGGTAAGCCTGATTCTTGGATGTACAGAGGAAGTAACCGGAATGCGTTACATTCCCATTTCCCCCACTCCCAGTGAGAGCAAACATTCAGACTTTCCTGTAAACATGGTGCCTCAACCATCTAGTCTCATTCCTGGTTTTGGAAGGTTCTTGCTACCTCCCACACCTAAGCTGCCATTCCTTCCTTACAAAGATCCCCTTGCTGTTGCCCCAGCCACTTCAAATGGAACTCCTAGTAATAAAGCCCGCAGTCCGAGTTCAGGAGAAGATGAAGTTCCACCAGTGCCACAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.81

Weight (kDa)

5.66

Isoelectric Point (pI)

74.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 1 cut(s) 286
AclWI GGATC 1 cut(s) 227
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 179, 299
AgsI TTSAA 1 cut(s) 261
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 162, 273
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 299
Bse1I ACTGG 2 cut(s) 111, 320
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 179, 299
BseNI ACTGG 2 cut(s) 111, 320
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 179, 299
BsmAI GTCTC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 2 cut(s) 111, 320
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 118, 327
Cac8I GCNNGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 145, 333
CviJI RGCY 6 cut(s) 5, 29, 48, 211, 254, 284
CviKI_1 RGCY 6 cut(s) 5, 29, 48, 211, 254, 284
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 148, 336
FaiI YATR 3 cut(s) 9, 146, 334
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 2 cut(s) 144, 332
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 2 cut(s) 162, 273
GluI GCNGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 254
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 148, 336
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 24, 130, 294
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 177, 230
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 2 cut(s) 148, 336
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 9 cut(s) 26, 62, 91, 124, 150, 159, 186, 264, 285
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 2 cut(s) 162, 273
MaeIII GTNAC 2 cut(s) 73, 86
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 317
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 33
MnlI CCTC 3 cut(s) 61, 162, 207
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 174
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 148, 336
NlaIV GGNNCC 1 cut(s) 150
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 331
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 188, 199, 208, 213
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 286
SspMI CTAG 2 cut(s) 162, 273
StyD4I CCNGG 1 cut(s) 172
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 2 cut(s) 118, 327
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 2 cut(s) 118, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 162, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.